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parent from group org.biopax.validator (version 5.1.0)

The BioPAX Validator Project (including a general-purpose object model validation and error reporting API core, OBO ontologies manager, MIRIAM registry access (to resolve bio db names and identifiers), hundreds BioPAX Level3 rules, settings, and the console and web applications)

Group: org.biopax.validator Artifact: parent
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Artifact parent
Group org.biopax.validator
Version 5.1.0
Last update 07. August 2023
Organization BioPAX.org
URL https://biopax.github.io/validator
License MIT
Dependencies amount 4
Dependencies javax.annotation-api, jaxb-api, javax.activation, junit,
There are maybe transitive dependencies!

paxtools from group org.biopax.paxtools (version 5.3.0)

Paxtools is a Java library that allows software to read, write, analyze and manipulate BioPAX models. Paxtools provide a consistent, fully implemented, validating BioPAX API that significantly reduces development time of oftware that require programmatic access to BioPAX. Paxtools is modular, lightweight and platform independent to be easily embedded into applications.

Group: org.biopax.paxtools Artifact: paxtools
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Artifact paxtools
Group org.biopax.paxtools
Version 5.3.0
Last update 06. August 2023
Organization BioPAX
URL https://biopax.github.io/Paxtools
License MIT license
Dependencies amount 4
Dependencies slf4j-api, jaxb-api, jaxb-core, jaxb-impl,
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biopax-validator from group org.biopax.validator (version 5.1.0)

BioPAX Semantic Rules and Best Practices validation

Group: org.biopax.validator Artifact: biopax-validator
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Artifact biopax-validator
Group org.biopax.validator
Version 5.1.0
Last update 07. August 2023
Organization not specified
URL https://biopax.github.io/validator
License not specified
Dependencies amount 10
Dependencies paxtools-core, normalizer, validator-core, spring-context-support, spring-oxm, commons-lang3, commons-text, spring-aop, spring-aspects, javax.annotation-api,
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biopax-validator-web from group org.biopax.validator (version 4.0.0)

BioPAX Validator Web Application and Web Service

Group: org.biopax.validator Artifact: biopax-validator-web
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Artifact biopax-validator-web
Group org.biopax.validator
Version 4.0.0
Last update 14. September 2018
Organization not specified
URL https://biopax.github.io/validator
License not specified
Dependencies amount 8
Dependencies biopax-validator, commons-beanutils, commons-digester, commons-collections, commons-fileupload, commons-io, spring-web, spring-webmvc,
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normalizer from group org.biopax.paxtools (version 5.3.0)

A BioPAX Normalizer and modified off-line MiriamLink (MIRIAM, EBI, OLS)

Group: org.biopax.paxtools Artifact: normalizer
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Artifact normalizer
Group org.biopax.paxtools
Version 5.3.0
Last update 06. August 2023
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 1
Dependencies paxtools-core,
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paxtools-archetype from group org.biopax.paxtools (version 5.3.0)

Paxtools Maven archetype - sample Java project to quickly start using Paxtools library and BioPAX data.

Group: org.biopax.paxtools Artifact: paxtools-archetype
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Artifact paxtools-archetype
Group org.biopax.paxtools
Version 5.3.0
Last update 06. August 2023
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 0
Dependencies No dependencies
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pattern from group org.biopax.paxtools (version 5.3.0)

The BioPAX Pattern Search library; also, e.g., converts BioPAX model to SIF (simple binary interactions) text format.

Group: org.biopax.paxtools Artifact: pattern
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Artifact pattern
Group org.biopax.paxtools
Version 5.3.0
Last update 06. August 2023
Organization not specified
URL https://biopax.github.io/Paxtools
License not specified
Dependencies amount 1
Dependencies paxtools-core,
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biopax-validator-client from group org.biopax.validator (version 5.1.0)

An example client for the biopax-validator

Group: org.biopax.validator Artifact: biopax-validator-client
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Artifact biopax-validator-client
Group org.biopax.validator
Version 5.1.0
Last update 07. August 2023
Organization not specified
URL https://biopax.github.io/validator
License not specified
Dependencies amount 2
Dependencies fluent-hc, httpmime,
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distr from group org.biopax.validator (version 5.1.0)

BioPAX Validator Distribution

Group: org.biopax.validator Artifact: distr
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Artifact distr
Group org.biopax.validator
Version 5.1.0
Last update 07. August 2023
Organization not specified
URL https://biopax.github.io/validator
License not specified
Dependencies amount 1
Dependencies biopax-validator,
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obo-fetcher from group org.biopax.validator (version 5.1.0)

OBO ontology access and handling (derived from EBI PSIDEV Ontology Manager and OLS)

Group: org.biopax.validator Artifact: obo-fetcher
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Artifact obo-fetcher
Group org.biopax.validator
Version 5.1.0
Last update 07. August 2023
Organization not specified
URL https://biopax.github.io/validator
License not specified
Dependencies amount 4
Dependencies obo, bbop, oscache, spring-core,
There are maybe transitive dependencies!


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