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/* Copyright (C) 2008-2016 University of Massachusetts Amherst.
This file is part of "FACTORIE" (Factor graphs, Imperative, Extensible)
http://factorie.cs.umass.edu, http://github.com/factorie
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License. */
package cc.factorie.app.nlp.ner
import cc.factorie.app.nlp.{Section, Token, Document, DocumentAnnotator}
import scala.reflect.{ClassTag, classTag}
import scala.collection.mutable
import java.util.logging.{Logger, Level}
/**
* @author John Sullivan
*/
object BilouConllNerChunkAnnotator extends NerChunkAnnotator[ConllNerSpan, BilouConllNerTag]({() => new ConllNerSpanBuffer}, {(s:Section, start:Int, end:Int, cat:String) => new ConllNerSpan(s, start, end, cat)})
object BilouOntonotesNerChunkAnnotator extends NerChunkAnnotator[OntonotesNerSpan, BilouOntonotesNerTag]({() => new OntonotesNerSpanBuffer}, {(s:Section, start:Int, end:Int, cat:String) => new OntonotesNerSpan(s, start, end, cat)})
object BioConllNerChunkAnnotator extends NerChunkAnnotator[ConllNerSpan, BioConllNerTag]({() => new ConllNerSpanBuffer}, {(s:Section, start:Int, end:Int, cat:String) => new ConllNerSpan(s, start, end, cat)})
object BioOntonotesNerChunkAnnotator extends NerChunkAnnotator[OntonotesNerSpan, BioOntonotesNerTag]({() => new OntonotesNerSpanBuffer}, {(s:Section, start:Int, end:Int, cat:String) => new OntonotesNerSpan(s, start, end, cat)})
/** Takes documents that are already annotated with token-level NerTags of type Tag and annotates them with NerSpans
* of type Span */
class NerChunkAnnotator[Span <: NerSpan : ClassTag, Tag <: NerTag : ClassTag](newBuffer:() => NerSpanBuffer[Span], newSpan:(Section, Int, Int, String) => Span) extends DocumentAnnotator {
val prereqAttrs = Seq(classTag[Tag].runtimeClass)
val postAttrs = Seq(classTag[Span].runtimeClass)
def tokenAnnotationString(token: Token) = token.attr.exactly[Tag].categoryValue
def process(doc: Document) = {
sealed trait State
case class Reading(tag:String) extends State
case object NotReading extends State
val spanBuffer = newBuffer()
doc.sections.foreach { sec =>
val iter = sec.tokens.iterator
var tok:Token = null
var state:State = NotReading
val tokBuffer = mutable.ArrayBuffer[Token]()
while(iter.hasNext) {
tok = iter.next()
val tag = tok.attr[Tag]
(tag.spanPrefix, state) match {
case ("O", NotReading) => ()
case ("U", NotReading) => spanBuffer.add(newSpan(sec, tok.positionInSection, 1, tag.baseCategoryValue))(null)
case ("B", NotReading) =>
tokBuffer += tok
state = Reading(tag.baseCategoryValue)
case ("I", Reading(_)) =>
tokBuffer += tok
case ("O", Reading(t)) =>
spanBuffer.add(newSpan(sec, tokBuffer.head.positionInSection, tokBuffer.size, t))(null)
tokBuffer.clear()
state = NotReading
case ("L", Reading(t)) =>
tokBuffer += tok
spanBuffer.add(newSpan(sec, tokBuffer.head.positionInSection, tokBuffer.size, t))(null)
tokBuffer.clear()
state = NotReading
case (prefix, s) =>
val prevStr = {
val prevToken = if (tok.hasPrev) tok.prev else null
if (prevToken != null) prevToken.attr[Tag].categoryValue else ""
}
NerChunkAnnotator.logger.log(Level.FINE, "Invalid combination of states, prefix %s, state %s at token %s. Previous token was %s.".format(prefix, s, tok, prevStr))
}
}
if (tokBuffer.nonEmpty) {
spanBuffer.add(newSpan(sec, tokBuffer.head.positionInSection, tokBuffer.size, state.asInstanceOf[Reading].tag))(null)
}
}
doc.attr += spanBuffer
doc.annotators ++= Seq(classTag[Tag].runtimeClass -> this.getClass, classTag[NerSpanBuffer[Span]].runtimeClass -> this.getClass)
doc
}
}
object NerChunkAnnotator {
private val logger : Logger = Logger.getLogger(getClass.getName)
}