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Open Source Chemistry Library
/*
* Copyright (c) 1997 - 2016
* Actelion Pharmaceuticals Ltd.
* Gewerbestrasse 16
* CH-4123 Allschwil, Switzerland
*
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice, this
* list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
* 3. Neither the name of the the copyright holder nor the
* names of its contributors may be used to endorse or promote products
* derived from this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
* ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
* WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
* DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
* ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
* (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
* LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
* ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
* SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*
*/
package com.actelion.research.chem.io;
import java.awt.*;
public interface CompoundTableConstants {
String cColumnUnassignedItemText = "";
String cColumnUnassignedCode = "";
String cColumnNameRowList = "List '";
// visible special columns
String cColumnTypeIDCode = "idcode";
String cColumnTypeRXNCode = "rxncode";
String[] cParentSpecialColumnTypes = {
cColumnTypeIDCode,
cColumnTypeRXNCode };
// non-parent special columns cannot be displayed
String cColumnType2DCoordinates = "idcoordinates2D";
String cColumnType3DCoordinates = "idcoordinates3D";
String cColumnTypeAtomColorInfo = "atomColorInfo";
String cColumnTypeFlagColors = "flagColors";
String cColumnTypeReactionMapping = "atomMapping";
String cColumnTypeReactionObjects = "reactionObjects";
String cColumnTypeNegRecImage = "negRecImg";
String cColumnTypeTransformation = "transformation";
// in addition to these all DescriptorHandler.SHORT_NAMEs are valid column types
// Flag values are ORed values from (1:green, 2:yellow, 4:orange, 8:red, ...)
Color[] cFlagColor = { Color.GREEN, Color.YELLOW, Color.ORANGE, Color.RED, Color.CYAN, Color.BLUE, Color.MAGENTA, Color.BLACK, new Color(192,192,192) };
String cReactionPartReaction = "reaction"; // this may only be used, if a molecule type descriptor is calculated from all merged reaction molecules
String cReactionPartReactants = "reactants";
String cReactionPartProducts = "products";
String cReactionPartDelimiter = " of ";
int cTextExclusionTypeContains = 1;
int cTextExclusionTypeStartsWith = 2;
int cTextExclusionTypeEndsWith = 3;
int cTextExclusionTypeEquals = 4;
int cTextExclusionTypeRegEx = 5;
int cMaxTextCategoryCount = 65536;
int cMaxDateOrDoubleCategoryCount = 16384;
boolean cAllowLogModeForNegativeOrZeroValues = true;
// summary mode for displaying values.
int cSummaryModeNormal = 0;
int cSummaryModeMean = 1;
int cSummaryModeMedian = 2;
int cSummaryModeMinimum = 3;
int cSummaryModeMaximum = 4;
int cSummaryModeSum = 5;
String[] cSummaryModeText = { "All Values", "Mean Value", "Median Value", "Lowest Value", "Highest Value", "Sum" };
String[] cSummaryModeCode = { "displayNormal","displayMean","displayMedian","displayMin","displayMax","displaySum" };
int cDataTypeAutomatic = 0;
int cDataTypeFloat = 1;
int cDataTypeInteger = 2;
int cDataTypeDate = 3;
int cDataTypeString = 4;
String cForceCategoriesCode = "_categories";
String[] cDataTypeCode = {"auto", "num", "int", "date", "text"};
String[] cDataTypeText = {"Automatic", "Floating Point", "Integer", "Date", "Text"};
// highlight mode for part-of-structure highlighting depending on current record similarity
int cStructureHiliteModeFilter = 0;
int cStructureHiliteModeCurrentRow = 1;
int cStructureHiliteModeNone = 2;
String[] cStructureHiliteModeText = { "Most Recent Filter", "Similarity To Reference Row", "No Highlighting" };
String[] cStructureHiliteModeCode = { "hiliteFilter", "hiliteCurrent", "hiliteNone" };
// highlight mode for part-of-reaction highlighting depending on current record similarity
int cReactionHiliteModeReactionCenter = 0;
int cReactionHiliteModeMapping = 1;
int cReactionHiliteModeNone = 2;
String[] cReactionHiliteModeText = { "Reaction Center", "Mapped Atoms", "No Highlighting" };
String[] cReactionHiliteModeCode = { "hiliteReactionCenter", "hiliteMapping", "hiliteNone" };
String NEWLINE_REGEX = "\\r?\\n|\\r"; // regex for platform independent new line char(s)
String NEWLINE_STRING = ""; // used in .dwar, .txt and .cvs files to indicate next line within a cell
String TAB_STRING = ""; // used in .dwar, .txt and .cvs files to indicate a tabulator within a cell
String cEntrySeparator = "; ";
byte[] cEntrySeparatorBytes = { ';', ' '};
String cLineSeparator = "\n";
byte cLineSeparatorByte = '\n'; // this must be equal to cLineSeparator
String cRangeSeparation = " <= x < ";
String cRangeNotAvailable = "";
String cDefaultDetailSeparator = "|#|";
String cDetailIndexSeparator = ":";
String cTextMultipleCategories = "";
String cColumnPropertySpecialType = "specialType";
String cColumnPropertyParentColumn = "parent";
String cColumnPropertyRelatedIdentifierColumn = "idColumn";
String cColumnPropertyRelatedCatalystColumn = "catalystColumn"; // one could think of coupling solvent, condition, etc as well
String[] cColumnRelationTypes = {cColumnPropertyRelatedIdentifierColumn, cColumnPropertyRelatedCatalystColumn};
String cColumnPropertyDisplayGroup = "displayGroup"; // Columns within same display group can be easily shown and hidden together; cell entries in same groups alo relate to each other in entry order
String cColumnPropertyUseThumbNail = "useThumbNail";
String cColumnPropertyImagePath = "imagePath";
String cColumnPropertyIsFragment = "isFragment"; // specifies for structure & reaction columns, whether the fragment bit is set, when editing a new object
String cColumnPropertyReactionPart = "reactionPart";
String cColumnPropertyIsClusterNo = "isClusterNo";
String cColumnPropertyDataMin = "dataMin";
String cColumnPropertyDataMax = "dataMax";
String cColumnPropertyCyclicDataMax = "cyclicDataMax";
String cColumnPropertyDetailCount = "detailCount";
String cColumnPropertyDetailName = "detailName";
String cColumnPropertyDetailType = "detailType";
String cColumnPropertyOrbitType = "orbitType";
String cColumnPropertyDetailSource = "detailSource";
String cColumnPropertyDetailSeparator = "detailSeparator";
String cColumnPropertyDescriptorVersion = "version";
String cColumnPropertyIsDisplayable = "isDisplayable";
String cColumnPropertyBinBase = "binBase";
String cColumnPropertyBinSize = "binSize";
String cColumnPropertyBinIsLog = "binIsLog";
String cColumnPropertyBinIsDate = "binIsDate";
String cColumnPropertyLookupCount = "lookupCount";
String cColumnPropertyLookupName = "lookupName";
String cColumnPropertyLookupURL = "lookupURL";
String cColumnPropertyLookupFilter = "lookupFilter";
String cColumnPropertyLookupFilterRemoveMinus = "lookupFilterRemoveMinus";
String cColumnPropertyLookupEncode = "lookupEncode";
String cColumnPropertyLookupDetailURL = "lookupDetailURL";
String cColumnPropertyCategorySpecificLookup = "catSpecificLookup";
String cColumnPropertyLaunchCount = "launchCount";
String cColumnPropertyLaunchName = "launchName";
String cColumnPropertyLaunchCommand = "launchCommand";
String cColumnPropertyLaunchOption = "launchOption";
String cColumnPropertyLaunchDecoration = "launchDecoration";
String cColumnPropertyLaunchAllowMultiple = "launchAllowMultiple";
String cColumnPropertyOpenExternalName = "openExternalName";
String cColumnPropertyOpenExternalPath = "openExternalPath";
String cColumnPropertyReferencedColumn = "refColumn";
String cColumnPropertyReferenceStrengthColumn = "refStrengthColumn";
String cColumnPropertyReferenceType = "refType";
String cColumnPropertyReferenceTypeRedundant = "redundant"; // a connection is always referenced on both records
String cColumnPropertyReferenceTypeTopDown = "topdown"; // a connection is only referenced from top record
String cColumnPropertyFormula = "formula";
String cColumnPropertyCompoundProperty = "compoundProperty";
String cColumnPropertySuperposeMolecule = "superposeMol"; // idcode+coords to be displayed in every cell
String cColumnPropertyProteinCavity = "proteinCavity"; // idcode+coords of protein cavity to be displayed in every cell
String cColumnPropertyNaturalLigand = "naturalLigand"; // idcode+coords of natural ligand, if proteinCavity is given (not shown, used for surface creation)
String cColumnPropertyShowNaturalLigand = "showNaturalLigand"; // whether to show the natural ligand in addition to row's structure; default is true
String cColumnPropertySuperpose = "superpose"; // cSuperposeValueReferenceRow or null
String cColumnPropertySuperposeAlign = "align"; // cSuperposeAlignValueShape or null
String cColumnProperty3DFragmentSplit = "split3D"; // if "true": unconnected fragments of 3D-structure are shown as differently colored V3DMolecules
String cColumnPropertyCommentUploadStatus = "commentUploadStatus";
String cColumnPropertyCommentDepartment = "commentDepartment";
String cColumnPropertyCalculated = "calculated"; //for columns that can be calculated by a task
String cColumnPropertyChemistryDisplayMode = "chemistryDisplayMode"; // display mode for molecules, e.g. to better recognize query features
String cColumnPropertyChemistryTextSize = "chemistryTextSize"; // display text size for molecule atom labels; default is 1.0
String cColumnPropertySARFirstRGroup = "firstRGroup"; // first R-group number used with core-based SAR on Scaffolds (sub-SAR)
String cSuperposeValueReferenceRow = "refRow"; // "reference" or null
String cSuperposeAlignValueShape = "shape"; // "reference" or null
String cNativeFileHeaderStart = "";
String cNativeFileHeaderEnd = " ";
String cNativeFileVersion = "version";
String cNativeFileRowCount = "rowcount";
String cNativeFileCreated = "created";
String cColumnPropertyStart = "";
String cColumnPropertyEnd = " ";
String cColumnName = "columnName";
String cColumnProperty = "columnProperty";
String cHitlistDataStart = "";
String cHitlistDataEnd = " ";
String cHitlistName = "hitlistName";
String cHitlistData = "hitlistData";
String cDetailDataStart = "";
String cDetailDataEnd = " ";
String cDetailID = "detailID";
String cTemplateTagName = "datawarrior properties";
String cPropertiesStart = "<"+cTemplateTagName+">";
String cPropertiesEnd ="";
String cViewConfigTagName = "view configuration";
String cDataDependentPropertiesStart = "";
String cFileExplanationEnd = "";
String cMacroListStart = "";
String cMacroListEnd = " ";
String cAutoStartMacro = "autoStartMacro";
}