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Open Source Chemistry Library
/*
* Copyright (c) 1997 - 2016
* Actelion Pharmaceuticals Ltd.
* Gewerbestrasse 16
* CH-4123 Allschwil, Switzerland
*
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice, this
* list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
* 3. Neither the name of the the copyright holder nor the
* names of its contributors may be used to endorse or promote products
* derived from this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
* ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
* WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
* DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
* ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
* (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
* LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
* ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
* SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*
* @author Thomas Sander
*/
package com.actelion.research.gui.editor;
import com.actelion.research.chem.StereoMolecule;
import com.actelion.research.chem.reaction.Reaction;
import com.actelion.research.gui.StructureListener;
import com.actelion.research.gui.hidpi.HiDPIHelper;
import javax.swing.*;
import java.awt.*;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.util.ArrayList;
public class SwingEditorDialog extends JDialog implements ActionListener {
static final long serialVersionUID = 0x20211103;
private static final String DEFAULT_MOLECULE_TITLE = "Structure Editor";
private static final String DEFAULT_REACTION_TITLE = "Reaction Editor";
private StereoMolecule mMolecule;
private SwingEditorToolbar mToolBar;
private SwingEditorArea mArea;
private JPanel mButtonPanel;
private boolean mIsCancelled;
private ArrayList mListener;
/**
* Creates a modal chemical editor dialog to edit a single molecule,
* which may, of course, consist of multiple disconnected fragments.
* Query features can be edited, if the passed mol's fragment bit is true.
* @param owner
* @param mol
*/
public SwingEditorDialog(Dialog owner, StereoMolecule mol) {
this(owner, mol, Dialog.DEFAULT_MODALITY_TYPE);
}
/**
* Creates a modal chemical editor dialog to edit a chemical reaction.
* Query features can be edited, if the passed rxn's fragment bit is true.
* @param owner
* @param rxn
*/
public SwingEditorDialog(Dialog owner, Reaction rxn) {
this(owner, rxn, Dialog.DEFAULT_MODALITY_TYPE);
}
/**
* Creates a chemical editor dialog to edit a single molecule,
* which may, of course, consist of multiple disconnected fragments.
* Query features can be edited, if the passed mol's fragment bit is true.
* @param owner
* @param mol
* @param modalityType
*/
public SwingEditorDialog(Dialog owner, StereoMolecule mol, ModalityType modalityType) {
super(owner, DEFAULT_MOLECULE_TITLE, modalityType);
mMolecule = (mol == null) ? new StereoMolecule() : new StereoMolecule(mol);
initialize(owner, 0);
}
/**
* Creates a modal chemical editor dialog to edit multiple molecules in one editor pane.
* Each of these molecule may consist of multiple disconnected fragments.
* Atoms connected by bonds or being in close vicinity are recognized to belong to the
* same molecule, while more distant fragments are perceived as separated molecules.
* Query features can be edited, if the passed mols' fragment bits are true.
* @param owner
* @param mol
* @param modalityType
*/
public SwingEditorDialog(Dialog owner, StereoMolecule[] mol, ModalityType modalityType) {
super(owner, DEFAULT_MOLECULE_TITLE, modalityType);
mMolecule = new StereoMolecule();
initialize(owner, GenericEditorArea.MODE_MULTIPLE_FRAGMENTS);
if (mol != null)
mArea.getGenericDrawArea().setFragments(mol);
}
/**
* Creates a modal chemical editor dialog to edit a chemical reaction.
* Query features can be edited, if the passed rxn's fragment bit is true.
* @param owner
* @param rxn
* @param modalityType
*/
public SwingEditorDialog(Dialog owner, Reaction rxn, ModalityType modalityType) {
super(owner, DEFAULT_REACTION_TITLE, modalityType);
mMolecule = new StereoMolecule();
initialize(owner, GenericEditorArea.MODE_REACTION);
if (rxn != null)
mArea.getGenericDrawArea().setReaction(rxn);
}
/**
* Creates a modal chemical editor dialog to edit a single molecule,
* which may, of course, consist of multiple disconnected fragments.
* Query features can be edited, if the passed mol's fragment bit is true.
* @param owner
* @param mol
*/
public SwingEditorDialog(Frame owner, StereoMolecule mol) {
this(owner, mol, Dialog.DEFAULT_MODALITY_TYPE);
}
/**
* Creates a modal chemical editor dialog to edit a chemical reaction.
* Query features can be edited, if the passed rxn's fragment bit is true.
* @param owner
* @param rxn
*/
public SwingEditorDialog(Frame owner, Reaction rxn) {
this(owner, rxn, Dialog.DEFAULT_MODALITY_TYPE);
}
/**
* Creates a chemical editor dialog to edit a single molecule,
* which may, of course, consist of multiple disconnected fragments.
* Query features can be edited, if the passed mol's fragment bit is true.
* @param owner
* @param mol
* @param modalityType
*/
public SwingEditorDialog(Frame owner, StereoMolecule mol, ModalityType modalityType) {
super(owner, DEFAULT_MOLECULE_TITLE, modalityType);
mMolecule = (mol == null) ? new StereoMolecule() : new StereoMolecule(mol);
initialize(owner, 0);
}
/**
* Creates a modal chemical editor dialog to edit multiple molecules in one editor pane.
* Each of these molecule may consist of multiple disconnected fragments.
* Atoms connected by bonds or being in close vicinity are recognized to belong to the
* same molecule, while more distant fragments are perceived as separated molecules.
* Query features can be edited, if the passed mols' fragment bits are true.
* @param owner
* @param mol
* @param modalityType
*/
public SwingEditorDialog(Frame owner, StereoMolecule[] mol, ModalityType modalityType) {
super(owner, DEFAULT_MOLECULE_TITLE, modalityType);
mMolecule = new StereoMolecule();
initialize(owner, GenericEditorArea.MODE_MULTIPLE_FRAGMENTS);
if (mol != null)
mArea.getGenericDrawArea().setFragments(mol);
}
/**
* Creates a modal chemical editor dialog to edit a chemical reaction.
* Query features can be edited, if the passed rxn's fragment bit is true.
* @param owner
* @param rxn
* @param modalityType
*/
public SwingEditorDialog(Frame owner, Reaction rxn, ModalityType modalityType) {
super(owner, DEFAULT_REACTION_TITLE, modalityType);
mMolecule = new StereoMolecule();
initialize(owner, GenericEditorArea.MODE_REACTION);
if (rxn != null)
mArea.getGenericDrawArea().setReaction(rxn);
}
private void initialize(Component owner, int mode) {
mArea = new SwingEditorArea(mMolecule, mode);
mArea.setPreferredSize(new Dimension(HiDPIHelper.scale(mode == GenericEditorArea.MODE_REACTION ? 800 : 480), HiDPIHelper.scale(300)));
getContentPane().add(mArea, BorderLayout.CENTER);
mToolBar = new SwingEditorToolbar(mArea);
getContentPane().add(mToolBar, BorderLayout.WEST);
mButtonPanel = new JPanel();
mButtonPanel.setLayout(new BorderLayout());
JPanel ibp = new JPanel();
ibp.setLayout(new GridLayout(1, 2, 8, 0));
JButton bcancel = new JButton("Cancel");
bcancel.addActionListener(this);
ibp.add(bcancel);
JButton bok = new JButton("OK");
bok.addActionListener(this);
ibp.add(bok);
mButtonPanel.add(ibp, BorderLayout.EAST);
JButton bhelp = new JButton("Help");
bhelp.addActionListener(this);
mButtonPanel.add(bhelp, BorderLayout.WEST);
mButtonPanel.setBorder(BorderFactory.createEmptyBorder(8, 8, 8, 8));
getContentPane().add(mButtonPanel, BorderLayout.SOUTH);
mListener = new ArrayList<>();
addKeyListener(mArea.getKeyHandler());
pack();
setLocationRelativeTo(owner);
mIsCancelled = true;
}
public void addStructureListener(StructureListener listener) {
mListener.add(listener);
}
public GenericEditorArea getDrawArea() {
return mArea.getGenericDrawArea();
}
public void setAccessory(Component accessory) {
mButtonPanel.add(accessory, BorderLayout.NORTH);
pack();
}
public StereoMolecule getStructure() {
return mMolecule;
}
/**
* @return mapped reaction with absolute coordinates, but without drawing objects
*/
public Reaction getReaction() {
return mArea.getGenericDrawArea().getReaction();
}
/**
* @return mapped reaction with absolute coordinates and drawing objects
*/
public Reaction getReactionAndDrawings() {
return mArea.getGenericDrawArea().getReactionAndDrawings();
}
public boolean isCancelled() {
return mIsCancelled;
}
public void actionPerformed(ActionEvent e) {
if (e.getActionCommand().equals("Help")) {
mArea.getGenericDrawArea().showHelpDialog();
return;
}
if (e.getActionCommand().equals("OK")) {
for (StructureListener sl : mListener)
sl.structureChanged(mMolecule);
mIsCancelled = false;
}
dispose();
}
}