com.actelion.research.orbit.imageAnalysis.models.PolygonExt Maven / Gradle / Ivy
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Orbit, a versatile image analysis software for biological image-based quantification
/*
* Orbit, a versatile image analysis software for biological image-based quantification.
* Copyright (C) 2009 - 2018 Idorsia Pharmaceuticals Ltd., Hegenheimermattweg 91, CH-4123 Allschwil, Switzerland.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see
* This pixelizes the polygon which takes some time the very first time, but is very fast for the next contains queries.
* However, to compute the area the method getArea should be used instead.
*/
@Override
public boolean contains(double x, double y) {
if (npoints < useRasterizedContainsThresh)
return super.contains(x, y);
else return containsImg(x, y);
}
public boolean isClosed() {
return closed;
}
public void setClosed(boolean closed) {
this.closed = closed;
}
public void move(double dx, double dy) {
double scaleFactor = (100d / scale);
double dxx = dx / scaleFactor;
double dyy = dy / scaleFactor;
for (int i = 0; i < npoints; i++) {
xpoints[i] += dxx;
ypoints[i] += dyy;
}
invalidate();
scaledInstance = null;
bufRaster = null;
}
public void rotate(double angle, Point2D center) {
for (int i = 0; i < npoints; i++) {
double x = center.getX() + (Math.cos(Math.toRadians(angle)) * (xpoints[i] - center.getX()) - Math.sin(Math.toRadians(angle)) * (ypoints[i] - center.getY()));
double y = center.getY() + (Math.sin(Math.toRadians(angle)) * (xpoints[i] - center.getX()) + Math.cos(Math.toRadians(angle)) * (ypoints[i] - center.getY()));
xpoints[i] = (int) (Math.round(x));
ypoints[i] = (int) (Math.round(y));
}
invalidate();
scaledInstance = null;
bufRaster = null;
}
public PolygonExt getScaledInstance(double currentScale, Point currentOffset) {
//return this;
if (Math.abs(scale - currentScale) <= OrbitUtils.EPSILON && !inverse) return this;
if ((scaledInstance != null) && (Math.abs(scaledInstance.getScale() - currentScale) <= OrbitUtils.EPSILON) && (scaledInstance.isClosed() == this.closed) && (scaledInstance.isInverse() == inverse)) {
return scaledInstance;
}
double scaleFactor = (currentScale / scale);
PolygonExt np;
if (!inverse) np = new PolygonExt();
else {
np = new PolygonExtInvers(new Rectangle(Integer.MAX_VALUE, Integer.MAX_VALUE));
}
np.setScale(currentScale);
// calculate the offset - see RecognitionFrame.paint
/*
AffineTransform trTranspInv =AffineTransform.getTranslateInstance(-currentOffset.x, -currentOffset.y);
AffineTransform trScale= AffineTransform.getScaleInstance(scaleFactor,scaleFactor);
trScale.concatenate(trTranspInv);
AffineTransform trConj =AffineTransform.getTranslateInstance(currentOffset.x, currentOffset.y);
trConj.concatenate(trScale);
*/
for (int i = 0; i < npoints; i++) {
np.addPoint((int) (xpoints[i] * scaleFactor), (int) (ypoints[i] * scaleFactor));
}
//np.translate((int)trConj.getTranslateX(),(int)trConj.getTranslateY());
np.setClosed(this.closed);
np.setOnlyPoints(this.onlyPoints);
scaledInstance = np;
return np;
}
/**
* Returns a scaled version of the polygon (real-scaling). The new scale-factor will remain!
*
* @param factor
* @return
*/
public PolygonExt scale(double factor, Point2D center) {
double scaleFactor = (factor / scale);
PolygonExt np;
if (!inverse) np = new PolygonExt();
else {
np = new PolygonExtInvers(new Rectangle(Integer.MAX_VALUE, Integer.MAX_VALUE));
}
np.setScale(scale);
for (int i = 0; i < npoints; i++) {
double x = xpoints[i];
double y = ypoints[i];
x -= center.getX();
x *= scaleFactor;
x += center.getX();
y -= center.getY();
y *= scaleFactor;
y += center.getY();
if (x < 0) x *= -1d;
if (y < 0) y *= -1d;
np.addPoint((int) x, (int) y);
}
np.setClosed(this.closed);
np.setOnlyPoints(this.onlyPoints);
return np;
}
/**
* draws the polygon to graphics g. If this.isClosed the normal g.drawPolygon method will be called,
* otherwise the points will be drawn line by line with open end.
*
* @param g
*/
public void drawPolygon(Graphics g) {
if (this.npoints <= 1) {
g.drawPolygon(this);
return;
}
if (onlyPoints) {
for (int i = 0; i < npoints; i++) {
g.drawLine(this.xpoints[i], this.ypoints[i], this.xpoints[i], this.ypoints[i]);
}
return;
}
if (!this.isClosed()) {
for (int i = 1; i < this.npoints; i++) {
g.drawLine(this.xpoints[i - 1], this.ypoints[i - 1], this.xpoints[i], this.ypoints[i]);
}
} else {
g.drawPolygon(this);
}
}
/**
* returns the distance from the first to the last point
*
* @return
*/
public double getDistDirstLast() {
if (npoints < 2) throw new IllegalStateException("at least two points have to be set");
Point p1 = new Point(xpoints[0], ypoints[0]);
Point p2 = new Point(xpoints[npoints - 1], ypoints[npoints - 1]);
return p1.distance(p2);
}
/**
* returns the full path distance (summed up over all points) of the ploygon
*
* @return
*/
public double getDistPath() {
if (npoints < 2) throw new IllegalStateException("at least two points have to be set");
double dist = 0d;
Point p1;
Point p2;
for (int i = 0; i < npoints - 1; i++) {
p1 = new Point(xpoints[i], ypoints[i]);
p2 = new Point(xpoints[i + 1], ypoints[i + 1]);
dist += p1.distance(p2);
}
return dist;
}
public void addPolygon(PolygonExt poly) {
for (int i = 0; i < poly.npoints; i++) {
addPoint(poly.xpoints[i], poly.ypoints[i]);
}
}
public void invertPolygon(final Polygon p) {
int x, y;
for (int i = 0; i < p.npoints / 2; i++) {
x = p.xpoints[i];
y = p.ypoints[i];
p.xpoints[i] = p.xpoints[p.npoints - i - 1];
p.ypoints[i] = p.ypoints[p.npoints - i - 1];
p.xpoints[p.npoints - i - 1] = x;
p.ypoints[p.npoints - i - 1] = y;
}
}
public String listPoints() {
StringBuilder sb = new StringBuilder();
for (int i = 0; i < npoints; i++) {
sb.append(xpoints[i] + "," + ypoints[i] + "; ");
}
return sb.toString();
}
public double getScale() {
return scale;
}
public void setScale(double scale) {
this.scale = scale;
}
public Point getViewPortOffs() {
return viewPortOffs;
}
public void setViewPortOffs(Point viewPortOffs) {
this.viewPortOffs = viewPortOffs;
}
public boolean isInverse() {
return inverse;
}
public void setInverse(boolean inverse) {
this.inverse = inverse;
}
public void resetScaledInstance() {
scaledInstance = null;
}
public boolean isOnlyPoints() {
return onlyPoints;
}
public void setOnlyPoints(boolean onlyPoints) {
this.onlyPoints = onlyPoints;
}
@Override
public PolygonExt clone() {
return SerialClone.clone(this);
}
/**
* Uses the xpoints, ypoints and bounds of another polygon.
* All objects will be cloned.
*
* @param p
*/
public void setPoly(Polygon p) {
this.xpoints = p.xpoints.clone();
this.ypoints = p.ypoints.clone();
this.npoints = p.npoints;
this.bounds = (Rectangle) p.getBounds().clone();
}
/**
* Checks if the convex(!!!) polygon polygon2 is inside this polygon (just checks all points)
*
* @param polygon2
* @return
*/
public boolean contains(Polygon polygon2) {
//all points in inner Polygon should be contained in polygon
int[] xpoints = polygon2.xpoints;
int[] ypoints = polygon2.ypoints;
boolean result = true;
for (int i = 0, j = 0; i < polygon2.npoints; i++, j++) {
result = this.contains(xpoints[i], ypoints[j]);
if (!result) break;
}
return result;
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
PolygonExt that = (PolygonExt) o;
if (closed != that.closed) return false;
if (Double.compare(that.scale, scale) != 0) return false;
if (viewPortOffs != null ? !viewPortOffs.equals(that.viewPortOffs) : that.viewPortOffs != null) return false;
return getBounds() != null ? getBounds().equals(that.getBounds()) : that.getBounds() == null;
}
/**
* First checks equals and then in addition checks each point of the polygons (not just bounds as in equals).
*
* @param o
* @return true/false
*/
public boolean equalsExact(Object o) {
if (!equals(o)) return false;
PolygonExt that = (PolygonExt) o;
if (npoints != that.npoints) return false;
for (int i = 0; i < npoints; i++) {
if (xpoints[i] != that.xpoints[i] || ypoints[i] != that.ypoints[i]) return false;
}
return true;
}
@Override
public int hashCode() {
int result;
long temp;
result = (closed ? 1 : 0);
temp = Double.doubleToLongBits(scale);
result = 31 * result + (int) (temp ^ (temp >>> 32));
result = 31 * result + (viewPortOffs != null ? viewPortOffs.hashCode() : 0);
result = 31 * result + (getBounds() != null ? getBounds().hashCode() : 0);
return result;
}
@Override
public int getRdfId() {
return rdfId;
}
@Override
public void setRdfId(int rdfId) {
this.rdfId = rdfId;
}
}