com.actelion.research.orbit.imageAnalysis.mask.OrbitMaskSegmentation Maven / Gradle / Ivy

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Orbit, a versatile image analysis software for biological image-based quantification

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/*
 *     Orbit, a versatile image analysis software for biological image-based quantification.
 *     Copyright (C) 2009 - 2018 Idorsia Pharmaceuticals Ltd., Hegenheimermattweg 91, CH-4123 Allschwil, Switzerland.
 *
 *     This program is free software: you can redistribute it and/or modify
 *     it under the terms of the GNU General Public License as published by
 *     the Free Software Foundation, either version 3 of the License, or
 *     (at your option) any later version.
 *
 *     This program is distributed in the hope that it will be useful,
 *     but WITHOUT ANY WARRANTY; without even the implied warranty of
 *     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *     GNU General Public License for more details.
 *
 *     You should have received a copy of the GNU General Public License
 *     along with this program.  If not, see .
 *
 */

package com.actelion.research.orbit.imageAnalysis.mask;

import com.actelion.research.orbit.imageAnalysis.utils.TiledImagePainter;

import java.awt.*;
import java.awt.image.Raster;
import java.util.ArrayList;
import java.util.List;

public class OrbitMaskSegmentation implements IOrbitMask {
    private List shapeList;

    public OrbitMaskSegmentation(List shapeList) {
        this.shapeList = shapeList;
    }

    @Override
    public void initialize(final TiledImagePainter tip) {

    }

    @Override
    public int numClasses() {
        return shapeList.size()+1;
    }

    @Override
    public int classNum(int x, int y, Raster raster) throws Exception {
        for (int i=0; i0;
    }

    @Override
    public String className(int classNum) {
        if (classNum==0) return "background";
        else return "shape"+classNum;
    }

    @Override
    public int classColor(int classNum) {
        if (classNum==0) return Color.blue.getRGB();
        else return Color.white.getRGB();
    }

    @Override
    public IOrbitMask clone() {
        OrbitMaskSegmentation cloned = null;
        try {
            cloned = (OrbitMaskSegmentation) super.clone();
            cloned.shapeList = new ArrayList<>(this.shapeList);
            return cloned;
        } catch (CloneNotSupportedException e) {
            e.printStackTrace();
            return null;
        }
    }

    public List getShapeList() {
        return shapeList;
    }

    public void setShapeList(List shapeList) {
        this.shapeList = shapeList;
    }
}