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Download dagr-tasks_2.12 JAR 1.0.0 with all dependencies


A set of example dagr tasks.

Files of the artifact dagr-tasks_2.12 version 1.0.0 from the group com.fulcrumgenomics.

Artifact dagr-tasks_2.12
Group com.fulcrumgenomics
Version 1.0.0
Last update 06. August 2019
Tags: dagr example tasks
Organization Fulcrum Genomics LLC
URL http://github.com/fulcrumgenomics/dagr
License MIT License
Dependencies amount 4
Dependencies scala-library, dagr-core_2.12, htsjdk, picard,
There are maybe transitive dependencies!
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Source code of dagr-tasks_2.12 version 1.0.0

META-INF
META-INF.META-INF.MANIFEST.MF
dagr.tasks
dagr.tasks.dagr.tasks.DagrDef.scala
dagr.tasks.dagr.tasks.JarTask.scala
dagr.tasks.dagr.tasks.ScatterGather.scala
dagr.tasks.bwa
dagr.tasks.bwa.dagr.tasks.bwa.Bwa.scala
dagr.tasks.bwa.dagr.tasks.bwa.BwaBacktrack.scala
dagr.tasks.bwa.dagr.tasks.bwa.BwaIndex.scala
dagr.tasks.bwa.dagr.tasks.bwa.BwaK8AltProcessor.scala
dagr.tasks.bwa.dagr.tasks.bwa.BwaMem.scala
dagr.tasks.fgbio
dagr.tasks.fgbio.dagr.tasks.fgbio.CallDuplexConsensusReads.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.CallMolecularConsensusReads.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.ClipBam.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.ClipOverlappingReads.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.CollectDuplexSeqMetrics.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.ErrorRateByReadPosition.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.ExtractUmisFromBam.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.FastqToBam.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.FgBioTask.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.FilterConsensusReads.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.FilterSomaticVcf.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.GroupReadsByUmi.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.RemoveSamTags.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.SortBam.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.TrimFastq.scala
dagr.tasks.fgbio.dagr.tasks.fgbio.TrimPrimers.scala
dagr.tasks.gatk
dagr.tasks.gatk.dagr.tasks.gatk.GatkTask.scala
dagr.tasks.gatk.dagr.tasks.gatk.GenotypeGvcfs.scala
dagr.tasks.gatk.dagr.tasks.gatk.HaplotypeCaller.scala
dagr.tasks.gatk.dagr.tasks.gatk.IndelRealigner.scala
dagr.tasks.gatk.dagr.tasks.gatk.Mutect1.scala
dagr.tasks.gatk.dagr.tasks.gatk.Mutect2.scala
dagr.tasks.gatk.dagr.tasks.gatk.SplitIntervalsForCallingRegions.scala
dagr.tasks.gatk.dagr.tasks.gatk.SplitNCigarReads.scala
dagr.tasks.jeanluc
dagr.tasks.jeanluc.dagr.tasks.jeanluc.FilterBam.scala
dagr.tasks.jeanluc.dagr.tasks.jeanluc.GenerateRegionsFromFasta.scala
dagr.tasks.jeanluc.dagr.tasks.jeanluc.JeanLucTask.scala
dagr.tasks.misc
dagr.tasks.misc.dagr.tasks.misc.CalculateDownsamplingProportion.scala
dagr.tasks.misc.dagr.tasks.misc.DeleteFiles.scala
dagr.tasks.misc.dagr.tasks.misc.DeleteVcfs.scala
dagr.tasks.misc.dagr.tasks.misc.GetNumPfReads.scala
dagr.tasks.misc.dagr.tasks.misc.GetSampleNamesFromVcf.scala
dagr.tasks.misc.dagr.tasks.misc.MakeDirectory.scala
dagr.tasks.misc.dagr.tasks.misc.MoveFile.scala
dagr.tasks.misc.dagr.tasks.misc.Tabix.scala
dagr.tasks.misc.dagr.tasks.misc.VerifyBamId.scala
dagr.tasks
dagr.tasks.dagr.tasks.package.scala
dagr.tasks.picard
dagr.tasks.picard.dagr.tasks.picard.AddOrReplaceReadGroups.scala
dagr.tasks.picard.dagr.tasks.picard.BuildBamIndex.scala
dagr.tasks.picard.dagr.tasks.picard.CheckIlluminaDirectory.scala
dagr.tasks.picard.dagr.tasks.picard.CleanSam.scala
dagr.tasks.picard.dagr.tasks.picard.CollectAlignmentSummaryMetrics.scala
dagr.tasks.picard.dagr.tasks.picard.CollectBaseDistributionByCycle.scala
dagr.tasks.picard.dagr.tasks.picard.CollectGcBiasMetrics.scala
dagr.tasks.picard.dagr.tasks.picard.CollectHsMetrics.scala
dagr.tasks.picard.dagr.tasks.picard.CollectIlluminaBasecallingMetrics.scala
dagr.tasks.picard.dagr.tasks.picard.CollectIlluminaLaneMetrics.scala
dagr.tasks.picard.dagr.tasks.picard.CollectInsertSizeMetrics.scala
dagr.tasks.picard.dagr.tasks.picard.CollectMultipleMetrics.scala
dagr.tasks.picard.dagr.tasks.picard.CollectQualityYieldMetrics.scala
dagr.tasks.picard.dagr.tasks.picard.CollectSequencingArtifactMetrics.scala
dagr.tasks.picard.dagr.tasks.picard.CollectTargetedPcrMetrics.scala
dagr.tasks.picard.dagr.tasks.picard.CollectVariantCallingMetrics.scala
dagr.tasks.picard.dagr.tasks.picard.CollectWgsMetrics.scala
dagr.tasks.picard.dagr.tasks.picard.CopyBaiToBamBai.scala
dagr.tasks.picard.dagr.tasks.picard.DeleteBam.scala
dagr.tasks.picard.dagr.tasks.picard.DownsampleSam.scala
dagr.tasks.picard.dagr.tasks.picard.EstimateLibraryComplexity.scala
dagr.tasks.picard.dagr.tasks.picard.ExtractIlluminaBarcodes.scala
dagr.tasks.picard.dagr.tasks.picard.FastqToSam.scala
dagr.tasks.picard.dagr.tasks.picard.FastqToUnmappedSam.scala
dagr.tasks.picard.dagr.tasks.picard.FifoBuffer.scala
dagr.tasks.picard.dagr.tasks.picard.FilterVcf.scala
dagr.tasks.picard.dagr.tasks.picard.FixMateInformation.scala
dagr.tasks.picard.dagr.tasks.picard.GatherBamFiles.scala
dagr.tasks.picard.dagr.tasks.picard.GatherVcfs.scala
dagr.tasks.picard.dagr.tasks.picard.GenotypeConcordance.scala
dagr.tasks.picard.dagr.tasks.picard.IlluminaBasecallsToSam.scala
dagr.tasks.picard.dagr.tasks.picard.IntervalListToBed.scala
dagr.tasks.picard.dagr.tasks.picard.IntervalListTools.scala
dagr.tasks.picard.dagr.tasks.picard.MarkDuplicates.scala
dagr.tasks.picard.dagr.tasks.picard.MarkIlluminaAdapters.scala
dagr.tasks.picard.dagr.tasks.picard.MergeBamAlignment.scala
dagr.tasks.picard.dagr.tasks.picard.MergeSamFiles.scala
dagr.tasks.picard.dagr.tasks.picard.MergeVcfs.scala
dagr.tasks.picard.dagr.tasks.picard.PicardMetricsTask.scala
dagr.tasks.picard.dagr.tasks.picard.PicardTask.scala
dagr.tasks.picard.dagr.tasks.picard.RevertSam.scala
dagr.tasks.picard.dagr.tasks.picard.SamToFastq.scala
dagr.tasks.picard.dagr.tasks.picard.SetNmAndUqTags.scala
dagr.tasks.picard.dagr.tasks.picard.SortSam.scala
dagr.tasks.picard.dagr.tasks.picard.SortVcf.scala
dagr.tasks.picard.dagr.tasks.picard.UpdateVcfSequenceDictionary.scala
dagr.tasks.picard.dagr.tasks.picard.ValidateSamFile.scala
dagr.tasks.picard.dagr.tasks.picard.VcfFormatConverter.scala
dagr.tasks.samtools
dagr.tasks.samtools.dagr.tasks.samtools.SamtoolsFaidx.scala
dagr.tasks.samtools.dagr.tasks.samtools.SamtoolsPileup.scala
dagr.tasks.samtools.dagr.tasks.samtools.SamtoolsTask.scala
dagr.tasks.vc
dagr.tasks.vc.dagr.tasks.vc.FilterFreeBayesCalls.scala
dagr.tasks.vc.dagr.tasks.vc.FreeBayes.scala
dagr.tasks.vc.dagr.tasks.vc.Strelka.scala
dagr.tasks.vc.dagr.tasks.vc.VarDictJava.scala
dagr.tasks.vc.dagr.tasks.vc.Varscan2Somatic.scala




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