com.hfg.bio.taxonomy.NCBITaxonNameClass Maven / Gradle / Ivy

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com.hfg xml, html, svg, and bioinformatics utility library
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package com.hfg.bio.taxonomy;

import java.io.Serializable;
import java.util.Collection;
import java.util.HashMap;
import java.util.Map;


//------------------------------------------------------------------------------
/**
 * Enumerated list of NCBI taxon name classes.
 * 
 * Based on values in the names.dmp file in ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz
 * 
 *
 * @author J. Alex Taylor, hairyfatguy.com
 */
//------------------------------------------------------------------------------
// com.hfg XML/HTML Coding Library
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
//
// J. Alex Taylor, President, Founder, CEO, COO, CFO, OOPS hairyfatguy.com
// [email protected]
//------------------------------------------------------------------------------

public class NCBITaxonNameClass implements Serializable
{
   //**************************************************************************
   // PRIVATE FIELDS
   //**************************************************************************

   private String mName;

   // Must be declared before the public NCBITaxonNameClass fields are constructed.
   private static Map sUniqueMap = new HashMap(20);

   //**************************************************************************
   // PUBLIC FIELDS
   //**************************************************************************

   public static NCBITaxonNameClass ACRONYM             = new NCBITaxonNameClass("acronym");
   public static NCBITaxonNameClass ANAMORPH            = new NCBITaxonNameClass("anamorph");
   public static NCBITaxonNameClass AUTHORITY           = new NCBITaxonNameClass("authority");
   public static NCBITaxonNameClass BLAST_NAME          = new NCBITaxonNameClass("blast name");
   public static NCBITaxonNameClass COMMON_NAME         = new NCBITaxonNameClass("common name");
   public static NCBITaxonNameClass EQUIVALENT_NAME     = new NCBITaxonNameClass("equivalent name");
   public static NCBITaxonNameClass GENBANK_ACRONYM     = new NCBITaxonNameClass("genbank acronym");
   public static NCBITaxonNameClass GENBANK_ANAMORPH    = new NCBITaxonNameClass("genbank anamorph");
   public static NCBITaxonNameClass GENBANK_COMMON_NAME = new NCBITaxonNameClass("genbank common name");
   public static NCBITaxonNameClass GENBANK_SYNONYM     = new NCBITaxonNameClass("genbank synonym");
   public static NCBITaxonNameClass INCLUDES            = new NCBITaxonNameClass("includes");
   public static NCBITaxonNameClass IN_PART             = new NCBITaxonNameClass("in-part");
   public static NCBITaxonNameClass MISNOMER            = new NCBITaxonNameClass("misnomer");
   public static NCBITaxonNameClass MISSPELLING         = new NCBITaxonNameClass("misspelling");
   public static NCBITaxonNameClass SCIENTIFIC_NAME     = new NCBITaxonNameClass("scientific name");
   public static NCBITaxonNameClass SYNONYM             = new NCBITaxonNameClass("synonym");
   public static NCBITaxonNameClass TELEOMORPH          = new NCBITaxonNameClass("teleomorph");
   public static NCBITaxonNameClass TYPE_MATERIAL       = new NCBITaxonNameClass("type material");
   public static NCBITaxonNameClass UNPUBLISHED_NAME    = new NCBITaxonNameClass("unpublished name");

   //**************************************************************************
   // CONSTRUCTORS
   //**************************************************************************

   //--------------------------------------------------------------------------
   private NCBITaxonNameClass(String inName)
   {
      mName = inName;

      if (sUniqueMap.containsKey(mName))
      {
         throw new RuntimeException("A object already exists with the name '" + mName + "'!");
      }

      sUniqueMap.put(mName, this);

   }

   //**************************************************************************
   // PUBLIC METHODS
   //**************************************************************************

   //--------------------------------------------------------------------------
   public static Collection values()
   {
      return sUniqueMap.values();
   }

   //--------------------------------------------------------------------------
   public static NCBITaxonNameClass valueOf(String inValue)
   {
      return sUniqueMap.get(inValue);
   }

   //--------------------------------------------------------------------------
   public String name()
   {
      return mName;
   }

   //--------------------------------------------------------------------------
   /**
    The same as name().
    */
   @Override
   public String toString()
   {
      return name();
   }

   //**************************************************************************
   // PRIVATE METHODS
   //**************************************************************************

   //--------------------------------------------------------------------------
   /**
    * This method is called after de-serialization, allowing the object
    * to nominate a replacement object to be used in the output
    * graph instead of this object. We don't want multiple objects of each type
    * to exist in a target VM, so instances replace themselves with
    * local objects.
    */
   private Object readResolve()
   {
      return sUniqueMap.get(mName);
   }
}