Download de.julielab JAR files with all dependencies

julielab-gene-mapper from group de.julielab (version 2.5.0)

Parent POM for: Mapper to find database entries of gene entity mentions

Group: de.julielab Artifact: julielab-gene-mapper

There is no JAR file uploaded. A download is not possible! Please choose another version.

0 downloads

Artifact julielab-gene-mapper
Group de.julielab
Version 2.5.0
Last update 03. December 2022
Organization not specified
URL Not specified
License not specified
Dependencies amount 0
Dependencies No dependencies
There are maybe transitive dependencies!

gene-candidate-retrieval from group de.julielab (version 2.5.0)

Group: de.julielab Artifact: gene-candidate-retrieval
Show documentation Show source

0 downloads

Artifact gene-candidate-retrieval
Group de.julielab
Version 2.5.0
Last update 03. December 2022
Organization not specified
URL Not specified
License not specified
Dependencies amount 3
Dependencies gene-mapper-experimental-base, lucene-analyzers-common, lucene-suggest,
There are maybe transitive dependencies!

gene-mapper-resources from group de.julielab (version 2.5.0)

This project assembles code and files required to build the dictionaries and indexes used by the JCoRe Gene Mapper.

Group: de.julielab Artifact: gene-mapper-resources
Show documentation Show source

0 downloads

Artifact gene-mapper-resources
Group de.julielab
Version 2.5.0
Last update 03. December 2022
Organization not specified
URL Not specified
License not specified
Dependencies amount 16
Dependencies gene-id-mapper, slf4j-api, jcore-types, piccolo, logback-classic, julie-xml-tools, costosys, junit-jupiter-engine, julielab-java-utilities, junit-jupiter-engine, jcore-xmi-db-reader, jcore-db-checkpoint-ae, jcore-xmi-splitter, jcore-descriptor-creator, assertj-core, commons-compress,
There are maybe transitive dependencies!

gene-id-mapper from group de.julielab (version 2.5.0)

Mapper to find database entries of gene entity mentions.

Group: de.julielab Artifact: gene-id-mapper
Show documentation Show source

0 downloads

Artifact gene-id-mapper
Group de.julielab
Version 2.5.0
Last update 03. December 2022
Organization not specified
URL Not specified
License not specified
Dependencies amount 34
Dependencies gene-species-assignment, gene-candidate-retrieval, guice, java-stdio-ipc, jackson-databind, biolemmatizer-core, lucene-core, slf4j-api, assertj-core, stax, guava, junit-jupiter-engine, junit-jupiter-params, multiregexp, libsvm, jcore-types, jcore-xmi-splitter, jcore-mallet-2.0.9, jcore-utilities, julielab-entity-evaluator, julielab-java-utilities, lucene-analyzers-common, lucene-suggest, commons-io, julie-xml-tools, jcore-descriptor-creator, ruta-core, commons-codec, spark-core, julielab-ranklib-mallet, julielab-smac-utilities, ehcache, cache-api, annotations,
There are maybe transitive dependencies!

gene-species-assignment from group de.julielab (version 1.0.0)

The task that is the subject of this project is the assignment of taxonomy identifiers to mentions of genes in text documents. The base for the assignment are mostly the mentions of species in the same document.

Group: de.julielab Artifact: gene-species-assignment
Show documentation Show source

0 downloads

Artifact gene-species-assignment
Group de.julielab
Version 1.0.0
Last update 03. December 2022
Organization JULIE Lab Jena, Germany
URL Not specified
License BSD-2-Clause
Dependencies amount 8
Dependencies gene-mapper-experimental-base, gene-candidate-retrieval, jcore-types, junit-jupiter-engine, assertj-core, lucene-suggest, ruta-core, jcore-utilities,
There are maybe transitive dependencies!

gene-mapper-experimental-base from group de.julielab (version 1.0.0)

This project has a lot of business classes to work with genes and related named entities. Genes are part of a GeneDocument and may have gold IDs as well as mapped/predicted IDs. Another large part are species because most (all?) gene ID databases are species specific. So there are also classes or members to represent species mentions and the assignment of species IDs (taxonomy IDs) to genes. There is little to no business logic herein. This project is only useful as building block in other projects dealing with species assignment, gene ID mapping or similar efforts.

Group: de.julielab Artifact: gene-mapper-experimental-base
Show documentation Show source

0 downloads

Artifact gene-mapper-experimental-base
Group de.julielab
Version 1.0.0
Last update 03. December 2022
Organization JULIE Lab Jena, Germany
URL Not specified
License BSD-2-Clause
Dependencies amount 21
Dependencies commons-lang3, commons-text, julielab-java-utilities, slf4j-api, lucene-analyzers-common, guava, julielab-ranklib-mallet, jcore-mallet-2.0.9, libsvm, spark-core, guice, julie-xml-tools, julielab-entity-evaluator, ehcache, cache-api, annotations, commons-codec, commons-io, junit-jupiter-engine, assertj-core, com.wcohen.secondstring,
There are maybe transitive dependencies!

jcore-bionlpgold-pred-gene-merge-ae from group de.julielab (version 2.6.0)

Given the gold BioNLP ST gene mentions and other gene mentions - possibly from gene recognizer - merges the two different sources of genes. For simplicity, this component employs two different types to represent genes. The BioNLP ST reader uses the de.julielab.jcore.types.Gene type. The other genes should be realized with de.julielab.jcore.types.Protein annotations.

Group: de.julielab Artifact: jcore-bionlpgold-pred-gene-merge-ae
Show documentation Show source

0 downloads

Artifact jcore-bionlpgold-pred-gene-merge-ae
Group de.julielab
Version 2.6.0
Last update 25. November 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bionlpgold-pred-gene-merge-ae
License BSD 2-Clause
Dependencies amount 5
Dependencies jcore-utilities, slf4j-api, jcore-types, jcore-descriptor-creator, junit-jupiter-engine,
There are maybe transitive dependencies!

jcore-bionlpformat-consumer from group de.julielab (version 2.6.1)

This consumer is used to generate BioNLP-ST (2009) compliant data from a CAS.

Group: de.julielab Artifact: jcore-bionlpformat-consumer
Show all versions Show documentation Show source

0 downloads

Artifact jcore-bionlpformat-consumer
Group de.julielab
Version 2.6.1
Last update 23. November 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bionlp09event-consumer
License BSD-2-Clause
Dependencies amount 4
Dependencies easymockclassextension, jcore-types, slf4j-api, junit-jupiter-engine,
There are maybe transitive dependencies!

jcore-cc-archetype from group de.julielab (version 2.6.0)

An archetype to quickly create new JCoRe UIMA CAS consumers.

Group: de.julielab Artifact: jcore-cc-archetype
Show all versions Show source

0 downloads

Artifact jcore-cc-archetype
Group de.julielab
Version 2.6.0
Last update 20. November 2022
Organization not specified
URL https://github.com/JULIELab/jcore-misc/tree/master/jcore-cc-archetype
License BSD 2-Clause
Dependencies amount 0
Dependencies No dependencies
There are maybe transitive dependencies!

jcore-cr-archetype from group de.julielab (version 2.6.0)

An archetype to quickly create new JCoRe UIMA collection reader.

Group: de.julielab Artifact: jcore-cr-archetype
Show all versions Show source

0 downloads

Artifact jcore-cr-archetype
Group de.julielab
Version 2.6.0
Last update 20. November 2022
Organization not specified
URL https://github.com/JULIELab/jcore-misc/tree/master/jcore-cr-archetype
License BSD 2-Clause
Dependencies amount 0
Dependencies No dependencies
There are maybe transitive dependencies!

Page 15 from 21 (items total 203)