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jcore-mutationfinder-ae from group de.julielab (version 2.6.1)

An analysis engine to recognize mentions of gene point mutations in document text. This is a wrapper around the original MutationFinder (http://mutationfinder.sourceforge.net/), published in the following paper: MutationFinder: A high-performance system for extracting point mutation mentions from text J. Gregory Caporaso, William A. Baumgartner Jr., David A. Randolph, K. Bretonnel Cohen, and Lawrence Hunter; Bioinformatics, 2007 23(14):1862-1865; doi:10.1093/bioinformatics/btm235;

Group: de.julielab Artifact: jcore-mutationfinder-ae
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Artifact jcore-mutationfinder-ae
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization not specified
URL Not specified
License BSD-2-Clause
Dependencies amount 6
Dependencies oro, junit-jupiter-engine, jcore-types, jcore-descriptor-creator, slf4j-api, assertj-core,
There are maybe transitive dependencies!

jcore-dta-reader from group de.julielab (version 2.6.1)

Reader for DTA files (German digital humanities corpus)

Group: de.julielab Artifact: jcore-dta-reader
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Artifact jcore-dta-reader
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-dta-reader
License BSD-2-Clause
Dependencies amount 6
Dependencies jcore-utilities, jcore-types, julie-xml-tools, guava, slf4j-api, junit-jupiter-engine,
There are maybe transitive dependencies!

jcore-jtbd-ae from group de.julielab (version 2.6.1)

UIMA Wrapper for the JULIE Token Boundary Detector.

Group: de.julielab Artifact: jcore-jtbd-ae
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Artifact jcore-jtbd-ae
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-jtbd-ae
License BSD-2-Clause
Dependencies amount 5
Dependencies slf4j-api, jcore-types, jcore-utilities, mallet, junit-jupiter-engine,
There are maybe transitive dependencies!

jcore-julielab-entity-evaluator-consumer from group de.julielab (version 2.6.1)

This component allows the output of entity mention data in documents in the format required by the JULIE Lab Entity Evaluator. This way, CAS annotations can be exported for evaluation purposes. The output format is a single tab-separated text file. For the exact format refer to the documentation of the julielab-entity-evaluator in the jcore-dependencies repository on https://github.com/JULIELab/.

Group: de.julielab Artifact: jcore-julielab-entity-evaluator-consumer
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Artifact jcore-julielab-entity-evaluator-consumer
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-julielab-entity-evaluator-consumer
License BSD-2-Clause
Dependencies amount 8
Dependencies julielab-entity-evaluator, jcore-utilities, jcore-types, jcore-descriptor-creator, julielab-java-utilities, junit-jupiter-engine, commons-lang3, commons-codec,
There are maybe transitive dependencies!

jcore-ppd-writer from group de.julielab (version 2.6.1)

This component writes CAS data to the piped text annotation format.

Group: de.julielab Artifact: jcore-ppd-writer
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Artifact jcore-ppd-writer
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-ppd-writer
License BSD-2-Clause
Dependencies amount 5
Dependencies slf4j-api, jcore-descriptor-creator, jcore-types, jcore-utilities, junit-jupiter-engine,
There are maybe transitive dependencies!

jcore-acronym-ae from group de.julielab (version 2.6.1)

Arconym Tagger based on the SCHWARTZ & HEARST Algorithm: Ariel S. Schwartz and Marti A. Hearst: A Simple Algorithm For Identifying Abbreviation Definitions in Biomedical Text. In: Pacific Symposium on Biocomputing, 2003.

Group: de.julielab Artifact: jcore-acronym-ae
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Artifact jcore-acronym-ae
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL Not specified
License BSD-2-Clause
Dependencies amount 4
Dependencies slf4j-api, jcore-types, jcore-utilities, junit-jupiter-engine,
There are maybe transitive dependencies!

jcore-likelihood-assignment-ae from group de.julielab (version 2.6.1)

Analysis Engine to assign likelihood indicators to their corresponding entities and events.

Group: de.julielab Artifact: jcore-likelihood-assignment-ae
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Artifact jcore-likelihood-assignment-ae
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-likelihood-assignment-ae
License BSD-2-Clause
Dependencies amount 5
Dependencies slf4j-api, jcore-descriptor-creator, jcore-utilities, jcore-types, junit-jupiter-engine,
There are maybe transitive dependencies!

jcore-opennlp-chunk-ae from group de.julielab (version 2.6.1)

UIMA wrapper for the OpenNLP Chunker. The difference to the official OpenNLP UIMA wrapper is basically the type system. In this project the JCoRe type system is employed and is thus compatible to other JCoRe components.

Group: de.julielab Artifact: jcore-opennlp-chunk-ae
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Artifact jcore-opennlp-chunk-ae
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-opennlp-chunk-ae
License BSD-2-Clause
Dependencies amount 6
Dependencies jcore-types, opennlp-tools, ant-optional, slf4j-api, julielab-java-utilities, junit-jupiter-engine,
There are maybe transitive dependencies!

jcore-flair-ner-ae from group de.julielab (version 2.6.1)

This component uses the Zalando Flair toolkit (https://github.com/zalandoresearch/flair) for named entity recognition. Since FLAIR is a python library, this component must use python for the actual NER part.

Group: de.julielab Artifact: jcore-flair-ner-ae
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Artifact jcore-flair-ner-ae
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-flair-ner-ae
License BSD-2-Clause
Dependencies amount 11
Dependencies jep, java-stdio-ipc, julielab-java-utilities, jcore-descriptor-creator, jcore-utilities, assertj-core, jcore-annotation-adder-ae, slf4j-api, jcore-types, jackson-core, testng,
There are maybe transitive dependencies!

jcore-bc2gmformat-writer from group de.julielab (version 2.6.1)

This component allows to write CAS entity annotations into the format used for the BioCreative II Gene Mention challenge.

Group: de.julielab Artifact: jcore-bc2gmformat-writer
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Artifact jcore-bc2gmformat-writer
Group de.julielab
Version 2.6.1
Last update 18. December 2022
Organization JULIE Lab Jena, Germany
URL https://github.com/JULIELab/jcore-base/tree/master/jcore-bc2gmformat-writer
License BSD-2-Clause
Dependencies amount 6
Dependencies slf4j-api, jcore-types, junit-jupiter-engine, jcore-utilities, julielab-java-utilities, jcore-descriptor-creator,
There are maybe transitive dependencies!



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