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/* This file is part of the OWL API.
* The contents of this file are subject to the LGPL License, Version 3.0.
* Copyright 2014, The University of Manchester
*
* This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
* This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
* You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.
*
* Alternatively, the contents of this file may be used under the terms of the Apache License, Version 2.0 in which case, the provisions of the Apache License Version 2.0 are applicable instead of those above.
* Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
* http://www.apache.org/licenses/LICENSE-2.0
* Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. */
package org.semanticweb.owlapi.model;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.ACCEPT_HTTP_COMPRESSION;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.ALLOW_DUPLICATES_IN_CONSTRUCT_SETS;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.AUTHORIZATION_VALUE;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.BANNED_PARSERS;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.CONNECTION_TIMEOUT;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.ENTITY_EXPANSION_LIMIT;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.FOLLOW_REDIRECTS;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.LOAD_ANNOTATIONS;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.MISSING_IMPORT_HANDLING_STRATEGY;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.MISSING_ONTOLOGY_HEADER_STRATEGY;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.OUTPUT_NAMED_GRAPH_IRI;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.PARSE_WITH_STRICT_CONFIGURATION;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.PRIORITY_COLLECTION_SORTING;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.REPAIR_ILLEGAL_PUNNINGS;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.REPORT_STACK_TRACES;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.RETRIES_TO_ATTEMPT;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.SKIP_MODULE_ANNOTATIONS;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.TREAT_DUBLINCORE_AS_BUILTIN;
import static org.semanticweb.owlapi.model.parameters.ConfigurationOptions.TRIM_TO_SIZE;
import java.io.Serializable;
import java.util.EnumMap;
import java.util.HashSet;
import java.util.Set;
import javax.annotation.Nonnull;
import org.semanticweb.owlapi.model.parameters.ConfigurationOptions;
import org.semanticweb.owlapi.vocab.Namespaces;
/**
* A configuration object that specifies options and hints to objects that load {@code OWLOntology}
* instances. Every {@code OWLOntologyLoaderConfiguration} is immutable. Changing a setting results
* in the creation of a new {@code OWLOntologyLoaderConfiguration} with that setting. For example,
*
*
*
* creates an {@code OWLOntologyLoaderConfiguration} object with the load annotation axioms set to
* {@code false}.
*
* @author Matthew Horridge, The University of Manchester, Bio-Health Informatics Group
* @since 3.2.0
*/
public class OWLOntologyLoaderConfiguration implements Serializable {
private static final long serialVersionUID = 40000L;
/**
* what action to take if the ontology header is missing.
*/
public enum MissingOntologyHeaderStrategy implements ByName {
//@formatter:off
/** Include triples. */ INCLUDE_GRAPH,
/** Keep import structure. */ IMPORT_GRAPH;
//@formatter:on
@Override
public MissingOntologyHeaderStrategy byName(CharSequence name) {
return valueOf(name.toString());
}
}
/** Local override map. */
private final EnumMap overrides =
new EnumMap<>(ConfigurationOptions.class);
/** set of imports to ignore */
@Nonnull
private final Set ignoredImports = new HashSet<>();
/**
* Adds an ontology document IRI to the list of ontology imports that will be ignored during
* ontology loading.
*
* @param ontologyDocumentIRI The ontology document IRI that will be ignored if it is
* encountered as an imported ontology during loading.
* @return An {@code OWLOntologyLoaderConfiguration} with the ignored ontology document IRI set.
*/
public OWLOntologyLoaderConfiguration addIgnoredImport(IRI ontologyDocumentIRI) {
OWLOntologyLoaderConfiguration configuration = copyConfiguration();
configuration.ignoredImports.add(ontologyDocumentIRI);
return configuration;
}
/**
* Clears all ontology document IRIs from the list of ignored ontology document IRIs.
*
* @return An {@code OWLOntologyLoaderConfiguration} with the list of ignored ontology document
* IRIs set to be empty.
*/
public OWLOntologyLoaderConfiguration clearIgnoredImports() {
OWLOntologyLoaderConfiguration configuration = copyConfiguration();
configuration.ignoredImports.clear();
return configuration;
}
/**
* Removes an ontology document IRI from the list of ontology imports that will be ignored
* during ontology loading.
*
* @param ontologyDocumentIRI The ontology document IRI that would be ignored if it is
* encountered as an imported ontology during loading.
* @return An {@code OWLOntologyLoaderConfiguration} with the ignored ontology document IRI
* removed.
*/
@Nonnull
public OWLOntologyLoaderConfiguration removeIgnoredImport(IRI ontologyDocumentIRI) {
OWLOntologyLoaderConfiguration configuration = copyConfiguration();
configuration.ignoredImports.remove(ontologyDocumentIRI);
return configuration;
}
/**
* Internally copies this configuration object.
*
* @return The copied configuration
*/
@Nonnull
private OWLOntologyLoaderConfiguration copyConfiguration() {
OWLOntologyLoaderConfiguration copy = new OWLOntologyLoaderConfiguration();
copy.overrides.putAll(overrides);
copy.ignoredImports.clear();
copy.ignoredImports.addAll(ignoredImports);
return copy;
}
/**
* Set the priority collection sorting option.
*
* @param sorting the sorting option to be used.
* @return An {@code OWLOntologyLoaderConfiguration} with the new sorting option set.
*/
public OWLOntologyLoaderConfiguration setPriorityCollectionSorting(
PriorityCollectionSorting sorting) {
if (sorting.equals(getPriorityCollectionSorting())) {
return this;
}
OWLOntologyLoaderConfiguration configuration = copyConfiguration();
configuration.overrides.put(PRIORITY_COLLECTION_SORTING, sorting);
return configuration;
}
/**
* @return The {@code PriorityCollectionSorting} for this configuration. It determines how
* parsers, storers and mappers are ordered. Default is
* {@link PriorityCollectionSorting#ON_SET_INJECTION_ONLY}
*/
public PriorityCollectionSorting getPriorityCollectionSorting() {
return PRIORITY_COLLECTION_SORTING.getValue(PriorityCollectionSorting.class, overrides);
}
/** @return the connection timeout for this configuration */
public int getConnectionTimeout() {
return CONNECTION_TIMEOUT.getValue(Integer.class, overrides).intValue();
}
/**
* Gets the strategy used for missing imports.
*
* @return The strategy. See {@link MissingImportHandlingStrategy} for the strategies and their
* descriptions.
* @since 3.3
*/
public MissingImportHandlingStrategy getMissingImportHandlingStrategy() {
return MISSING_IMPORT_HANDLING_STRATEGY.getValue(MissingImportHandlingStrategy.class,
overrides);
}
/** @return the ontology header strategy */
public MissingOntologyHeaderStrategy getMissingOntologyHeaderStrategy() {
return MISSING_ONTOLOGY_HEADER_STRATEGY.getValue(MissingOntologyHeaderStrategy.class,
overrides);
}
/**
* @return number of retries to attempt when retrieving an ontology form a remote URL.
*/
public int getRetriesToAttempt() {
return RETRIES_TO_ATTEMPT.getValue(Integer.class, overrides).intValue();
}
/** @return true if http compression should be accepted. */
public boolean isAcceptingHTTPCompression() {
return ACCEPT_HTTP_COMPRESSION.getValue(Boolean.class, overrides).booleanValue();
}
/**
* When loading an ontology, a parser might connect to a remote URL. If the remote URL is a 302
* redirect and the protocol is different, e.g., http to https, the parser needs to decide
* whether to follow the redirect and download the ontology from an alternate source, or stop
* with an UnloadableOntologyError. By default this is true, meaning redirects will be followed
* across protocols. If set to false, redirects will be followed only within the same protocol
* (URLConnection limits this to five redirects).
*
* @return true if redirects should be followed when importing ontologies from remote URLs
*/
public boolean isFollowRedirects() {
return FOLLOW_REDIRECTS.getValue(Boolean.class, overrides).booleanValue();
}
/**
* @param iri iri to check
* @return true if iri should be ignored
*/
public boolean isIgnoredImport(IRI iri) {
return Namespaces.isDefaultIgnoredImport(iri) || ignoredImports.contains(iri);
}
/**
* Determines whether or not annotation axioms (instances of {@code OWLAnnotationAxiom}) should
* be loaded. By default, the loading of annotation axioms is enabled.
*
* @return {@code true} if annotation assertions will be loaded, or {@code false} if annotation
* assertions will not be loaded because they will be discarded on loading.
*/
public boolean isLoadAnnotationAxioms() {
return LOAD_ANNOTATIONS.getValue(Boolean.class, overrides).booleanValue();
}
/** @return value for the report stack trace flag. */
public boolean isReportStackTrace() {
return REPORT_STACK_TRACES.getValue(Boolean.class, overrides).booleanValue();
}
/** @return true if parsing should be strict */
public boolean isStrict() {
return PARSE_WITH_STRICT_CONFIGURATION.getValue(Boolean.class, overrides).booleanValue();
}
/**
* @return true if illegal punnings should be repaired
*/
public boolean shouldRepairIllegalPunnings() {
return REPAIR_ILLEGAL_PUNNINGS.getValue(Boolean.class, overrides).booleanValue();
}
/**
* Determines if the various parsers, for formats such as RDF based formats that do not require
* strong typing, should treat Dublin Core Vocabulary as built in vocabulary, so that Dublin
* Core metadata properties are interpreted as annotation properties.
*
* @return {@code true} if the Dublin Core Vocabulary should be treated as built in vocabulary
* and Dublin Core properties are interpreted as annotation properties, otherwise
* {@code false}. The default is {@code true}.
*/
public boolean isTreatDublinCoreAsBuiltIn() {
return TREAT_DUBLINCORE_AS_BUILTIN.getValue(Boolean.class, overrides).booleanValue();
}
/**
* @return list of parser factory class names that should be skipped when attempting ontology
* parsing. The list is space separated.
*/
public String getBannedParsers() {
return BANNED_PARSERS.getValue(String.class, overrides);
}
/** @return authorization header value */
public String getAuthorizationValue() {
return AUTHORIZATION_VALUE.getValue(String.class, overrides);
}
/**
* @return max number of XML entity expansions to perform while parsing RDF/XML.
*/
public String getEntityExpansionLimit() {
return ENTITY_EXPANSION_LIMIT.getValue(String.class, overrides);
}
/**
* @return true if ontology should be trimmed to size after load
*/
public boolean shouldTrimToSize() {
return TRIM_TO_SIZE.getValue(Boolean.class, overrides).booleanValue();
}
/**
* @param b true if HTTP compression should be accepted
* @return a copy of this configuration with accepting HTTP compression set to the new value
*/
@Nonnull
public OWLOntologyLoaderConfiguration setAcceptingHTTPCompression(boolean b) {
// do not make copies if setting the same value
if (isAcceptingHTTPCompression() == b) {
return this;
}
OWLOntologyLoaderConfiguration copy = copyConfiguration();
copy.overrides.put(ACCEPT_HTTP_COMPRESSION, Boolean.valueOf(b));
return copy;
}
/**
* @param l new timeout Note: the timeout is an int and represents milliseconds. This is
* necessary for use in {@code URLConnection}
* @return A {@code OWLOntologyLoaderConfiguration} with the connection timeout set to the new
* value.
*/
@Nonnull
public OWLOntologyLoaderConfiguration setConnectionTimeout(int l) {
if (getConnectionTimeout() == l) {
return this;
}
OWLOntologyLoaderConfiguration configuration = copyConfiguration();
configuration.overrides.put(CONNECTION_TIMEOUT, Integer.valueOf(l));
return configuration;
}
/**
* @param value true if redirects should be followed across protocols, false otherwise.
* @return a copy of the current object with the follow redirects flag set to the new value.
*/
@Nonnull
public OWLOntologyLoaderConfiguration setFollowRedirects(boolean value) {
// as the objects are immutable, setting to the same value returns the
// same object
if (value == isFollowRedirects()) {
return this;
}
OWLOntologyLoaderConfiguration copy = copyConfiguration();
copy.overrides.put(FOLLOW_REDIRECTS, Boolean.valueOf(value));
return copy;
}
/**
* Specifies whether or not annotation axioms (instances of {@code OWLAnnotationAxiom}) should
* be loaded or whether they should be discarded on loading. By default, the loading of
* annotation axioms is enabled.
*
* @param b {@code true} if annotation axioms should be loaded, or {@code false} if annotation
* axioms should not be loaded and should be discarded on loading.
* @return An {@code OWLOntologyLoaderConfiguration} object with the option set.
*/
@Nonnull
public OWLOntologyLoaderConfiguration setLoadAnnotationAxioms(boolean b) {
// do not make copies if setting the same value
if (isLoadAnnotationAxioms() == b) {
return this;
}
OWLOntologyLoaderConfiguration copy = copyConfiguration();
copy.overrides.put(LOAD_ANNOTATIONS, Boolean.valueOf(b));
return copy;
}
/**
* Sets the strategy that is used for missing imports handling. See
* {@link MissingImportHandlingStrategy} for the strategies and their descriptions.
*
* @param missingImportHandlingStrategy The strategy to be used.
* @return An {@code OWLOntologyLoaderConfiguration} object with the strategy set.
* @since 3.3
*/
@Nonnull
public OWLOntologyLoaderConfiguration setMissingImportHandlingStrategy(
@Nonnull MissingImportHandlingStrategy missingImportHandlingStrategy) {
// do not make copies if setting the same value
if (getMissingImportHandlingStrategy() == missingImportHandlingStrategy) {
return this;
}
OWLOntologyLoaderConfiguration copy = copyConfiguration();
copy.overrides.put(MISSING_IMPORT_HANDLING_STRATEGY, missingImportHandlingStrategy);
return copy;
}
/**
* @param missingOntologyHeaderStrategy new value
* @return a copy of this configuration object with a different strategy
*/
@Nonnull
public OWLOntologyLoaderConfiguration setMissingOntologyHeaderStrategy(
@Nonnull MissingOntologyHeaderStrategy missingOntologyHeaderStrategy) {
// do not make copies if setting the same value
if (getMissingOntologyHeaderStrategy() == missingOntologyHeaderStrategy) {
return this;
}
OWLOntologyLoaderConfiguration copy = copyConfiguration();
copy.overrides.put(MISSING_ONTOLOGY_HEADER_STRATEGY, missingOntologyHeaderStrategy);
return copy;
}
/**
* Set the value for the report stack traces flag. If true, parsing exceptions will have the
* full stack trace for the source exceptions. Default is false.
*
* @param b the new value for the flag
* @return A {@code OWLOntologyLoaderConfiguration} with the report flag set to the new value.
*/
@Nonnull
public OWLOntologyLoaderConfiguration setReportStackTraces(boolean b) {
if (isReportStackTrace() == b) {
return this;
}
OWLOntologyLoaderConfiguration configuration = copyConfiguration();
configuration.overrides.put(REPORT_STACK_TRACES, Boolean.valueOf(b));
return configuration;
}
/**
* @param retries new value of retries to attempt
* @return copy of this configuration with modified retries attempts.
*/
@Nonnull
public OWLOntologyLoaderConfiguration setRetriesToAttempt(int retries) {
// do not make copies if setting the same value
if (getRetriesToAttempt() == retries) {
return this;
}
OWLOntologyLoaderConfiguration copy = copyConfiguration();
copy.overrides.put(RETRIES_TO_ATTEMPT, Integer.valueOf(retries));
return copy;
}
/**
* @param strict new value for strict
* @return copy of the configuration with new strict value
*/
@Nonnull
public OWLOntologyLoaderConfiguration setStrict(boolean strict) {
// do not make copies if setting the same value
if (isStrict() == strict) {
return this;
}
OWLOntologyLoaderConfiguration copy = copyConfiguration();
copy.overrides.put(PARSE_WITH_STRICT_CONFIGURATION, Boolean.valueOf(strict));
return copy;
}
/**
* @param value true if Dublin Core vocabulary should be treated as built in.
* @return a copy of the current object with the treat Dublin Core as builtIn set to the new
* value.
*/
@Nonnull
public OWLOntologyLoaderConfiguration setTreatDublinCoreAsBuiltIn(boolean value) {
// as the objects are immutable, setting to the same value returns the
// same object
if (isTreatDublinCoreAsBuiltIn() == value) {
return this;
}
OWLOntologyLoaderConfiguration copy = copyConfiguration();
copy.overrides.put(TREAT_DUBLINCORE_AS_BUILTIN, Boolean.valueOf(value));
return copy;
}
/**
* @param ban list of parser factory class names that should be skipped when attempting ontology
* parsing. The list is space separated.
* @return An {@code OntologyConfigurator} with the new option set.
*/
public OWLOntologyLoaderConfiguration setBannedParsers(String ban) {
if (getBannedParsers().equals(ban)) {
return this;
}
OWLOntologyLoaderConfiguration configuration = copyConfiguration();
configuration.overrides.put(BANNED_PARSERS, ban);
return configuration;
}
/**
* @param limit maximum number of XML entities to expand.
* @return An {@code OntologyConfigurator} with the new option set.
*/
public OWLOntologyLoaderConfiguration setEntityExpansionLimit(String limit) {
if (getEntityExpansionLimit().equals(limit)) {
return this;
}
OWLOntologyLoaderConfiguration configuration = copyConfiguration();
configuration.overrides.put(ENTITY_EXPANSION_LIMIT, limit);
return configuration;
}
/**
* @param b if illegal punnings should be repaired
* @return A {@code OWLOntologyLoaderConfiguration} with the repair flag set to the new value.
*/
public OWLOntologyLoaderConfiguration setRepairIllegalPunnings(boolean b) {
if (shouldRepairIllegalPunnings() == b) {
return this;
}
OWLOntologyLoaderConfiguration configuration = copyConfiguration();
configuration.overrides.put(REPAIR_ILLEGAL_PUNNINGS, Boolean.valueOf(b));
return configuration;
}
/**
* @param authorizationValue Authorization header value.
* @return An {@code OntologyConfigurator} with the new option set.
*/
public OWLOntologyLoaderConfiguration setAuthorizationValue(String authorizationValue) {
if (getAuthorizationValue().equals(authorizationValue)) {
return this;
}
OWLOntologyLoaderConfiguration configuration = copyConfiguration();
configuration.overrides.put(AUTHORIZATION_VALUE, authorizationValue);
return configuration;
}
/**
* @param value new value for trim to size
* @return An {@code OntologyConfigurator} with the new option set.
*/
public OWLOntologyLoaderConfiguration setTrimToSize(boolean value) {
if (shouldTrimToSize() == value) {
return this;
}
OWLOntologyLoaderConfiguration configuration = copyConfiguration();
configuration.overrides.put(TRIM_TO_SIZE, Boolean.valueOf(value));
return configuration;
}
/**
* @return true if module extraction should not add annotation axioms to the module.
*/
public boolean shouldSkipModuleAnnotations() {
return SKIP_MODULE_ANNOTATIONS.getValue(Boolean.class, overrides).booleanValue();
}
/**
* @param value true if annotation axioms should not be added to modules
* @return A {@code OWLOntologyLoaderConfiguration} with the annotation axioms flag set to the
* new value.
*/
public OWLOntologyLoaderConfiguration withSkipModuleAnnotations(boolean value) {
if (shouldSkipModuleAnnotations() == value) {
return this;
}
OWLOntologyLoaderConfiguration configuration = copyConfiguration();
configuration.overrides.put(SKIP_MODULE_ANNOTATIONS, Boolean.valueOf(value));
return configuration;
}
/**
* @return false if collections used in constructs such as equivalent classes and properties
* should be duplicate free. Some systems might need to allow this, e.g., reasoners
* which require the creation of a tautology like {@code Equivalent(A, A)}.
*/
public boolean shouldAllowDuplicatesInConstructSets() {
return ALLOW_DUPLICATES_IN_CONSTRUCT_SETS.getValue(Boolean.class, overrides).booleanValue();
}
/**
* @param value false if collections used in constructs such as equivalent classes and
* properties should be duplicate free.
* @return A {@code OWLOntologyLoaderConfiguration} with the allow duplicates flag set to the
* new value.
*/
public OWLOntologyLoaderConfiguration withAllowDuplicatesInConstructSets(boolean value) {
if (shouldAllowDuplicatesInConstructSets() == value) {
return this;
}
OWLOntologyLoaderConfiguration configuration = copyConfiguration();
configuration.overrides.put(ALLOW_DUPLICATES_IN_CONSTRUCT_SETS, Boolean.valueOf(value));
return configuration;
}
/**
* @param label True if named graph IRIs comments should be enabled.
* @return new config object
*/
public OWLOntologyLoaderConfiguration withNamedGraphIRIEnabled(boolean label) {
if (shouldOutputNamedGraphIRI() == label) {
return this;
}
overrides.put(OUTPUT_NAMED_GRAPH_IRI, Boolean.valueOf(label));
return this;
}
/**
* @return should output named graph IRIs
*/
public boolean shouldOutputNamedGraphIRI() {
return OUTPUT_NAMED_GRAPH_IRI.getValue(Boolean.class, overrides).booleanValue();
}
}
