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A multidimensional, type-agnostic image processing library.
/*
* #%L
* ImgLib2: a general-purpose, multidimensional image processing library.
* %%
* Copyright (C) 2009 - 2018 Tobias Pietzsch, Stephan Preibisch, Stephan Saalfeld,
* John Bogovic, Albert Cardona, Barry DeZonia, Christian Dietz, Jan Funke,
* Aivar Grislis, Jonathan Hale, Grant Harris, Stefan Helfrich, Mark Hiner,
* Martin Horn, Steffen Jaensch, Lee Kamentsky, Larry Lindsey, Melissa Linkert,
* Mark Longair, Brian Northan, Nick Perry, Curtis Rueden, Johannes Schindelin,
* Jean-Yves Tinevez and Michael Zinsmaier.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
* #L%
*/
package net.imglib2.img.sparse;
import net.imglib2.Dimensions;
import net.imglib2.exception.IncompatibleTypeException;
import net.imglib2.img.ImgFactory;
import net.imglib2.img.NativeImgFactory;
import net.imglib2.type.NativeType;
import net.imglib2.type.NativeTypeFactory;
import net.imglib2.util.Fraction;
import net.imglib2.util.Intervals;
import net.imglib2.util.Util;
/**
* @author Tobias Pietzsch
*
*/
public class NtreeImgFactory< T extends NativeType< T > > extends NativeImgFactory< T >
{
public NtreeImgFactory( final T type )
{
super( type );
}
@Override
public NtreeImg< T, ? > create( final long... dimensions )
{
return create( dimensions, type(), type().getNativeTypeFactory() );
}
@Override
public NtreeImg< T, ? > create( final Dimensions dimensions )
{
return create( Intervals.dimensionsAsLongArray( dimensions ) );
}
@Override
public NtreeImg< T, ? > create( final int[] dimensions )
{
return create( Util.int2long( dimensions ) );
}
private < A > NtreeImg< T, ? > create( final long[] dimensions, final T type, final NativeTypeFactory< T, A > typeFactory )
{
final Fraction entitiesPerPixel = type.getEntitiesPerPixel();
if ( entitiesPerPixel.getNumerator() != entitiesPerPixel.getDenominator() )
throw new RuntimeException( "not implemented" );
final long[] pos = new long[ dimensions.length ];
final NtreeImg< T, ? extends A > img = new NtreeImg<>(
createNtreeAccess( typeFactory, dimensions ).createInstance( pos ),
// calling createInstance(pos) is necessary here, because
// otherwise javac will not infer the NtreeAccess type
dimensions,
entitiesPerPixel );
img.setLinkedType( typeFactory.createLinkedType( img ) );
return img;
}
@SuppressWarnings( "unchecked" )
public static < A extends NtreeAccess< ?, A > > A createNtreeAccess(
final NativeTypeFactory< ?, ? super A > typeFactory,
final long[] dimensions )
{
switch ( typeFactory.getPrimitiveType() )
{
case BYTE:
return ( A ) new ByteNtree( dimensions, null, ( byte ) 0 );
case CHAR:
return ( A ) new CharNtree( dimensions, null, ( char ) 0 );
case DOUBLE:
return ( A ) new DoubleNtree( dimensions, null, 0 );
case FLOAT:
return ( A ) new FloatNtree( dimensions, null, 0 );
case INT:
return ( A ) new IntNtree( dimensions, null, 0 );
case LONG:
return ( A ) new LongNtree( dimensions, null, 0 );
case SHORT:
return ( A ) new ShortNtree( dimensions, null, ( short ) 0 );
default:
throw new IllegalArgumentException();
}
}
@SuppressWarnings( { "unchecked", "rawtypes" } )
@Override
public < S > ImgFactory< S > imgFactory( final S type ) throws IncompatibleTypeException
{
if ( NativeType.class.isInstance( type ) )
return new NtreeImgFactory( ( NativeType ) type );
throw new IncompatibleTypeException( this, type.getClass().getCanonicalName() + " does not implement NativeType." );
}
/*
* -----------------------------------------------------------------------
*
* Deprecated API.
*
* Supports backwards compatibility with ImgFactories that are constructed
* without a type instance or supplier.
*
* -----------------------------------------------------------------------
*/
@Deprecated
public NtreeImgFactory()
{
super();
}
@Deprecated
@Override
public NtreeImg< T, ? > create( final long[] dimensions, final T type )
{
cache( type );
return create( dimensions, type, type.getNativeTypeFactory() );
}
}