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A multidimensional, type-agnostic image processing library.
/*
* #%L
* ImgLib2: a general-purpose, multidimensional image processing library.
* %%
* Copyright (C) 2009 - 2018 Tobias Pietzsch, Stephan Preibisch, Stephan Saalfeld,
* John Bogovic, Albert Cardona, Barry DeZonia, Christian Dietz, Jan Funke,
* Aivar Grislis, Jonathan Hale, Grant Harris, Stefan Helfrich, Mark Hiner,
* Martin Horn, Steffen Jaensch, Lee Kamentsky, Larry Lindsey, Melissa Linkert,
* Mark Longair, Brian Northan, Nick Perry, Curtis Rueden, Johannes Schindelin,
* Jean-Yves Tinevez and Michael Zinsmaier.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
* this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
* this list of conditions and the following disclaimer in the documentation
* and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
* #L%
*/
package net.imglib2.view;
import net.imglib2.Interval;
import net.imglib2.Positionable;
import net.imglib2.RandomAccess;
import net.imglib2.RandomAccessibleInterval;
import net.imglib2.RealPositionable;
/**
* {@link SubsampleIntervalView} is a view that provides access to only every
* sdth value of a source
* {@link RandomAccessibleInterval}. Its transformed origin is at the min
* coordinate of the source {@link Interval}. This is effectively an integer
* scaling and optional offset transformation. Localization calls to the
* {@link RandomAccess} and {@link Interval} dimension calls to the
* {@link SubsampleIntervalView} return scaled and translated coordinates that
* are generated on-the-fly. Localization is thus moderately inefficient to the
* benefit of faster positioning. Don't ask for what you already know ;).
*
* @author Stephan Saalfeld
*/
public class SubsampleIntervalView< T > extends SubsampleView< T > implements RandomAccessibleInterval< T >
{
final protected long[] dimensions;
final protected long[] max;
public SubsampleIntervalView( final RandomAccessibleInterval< T > source, final long step )
{
super( Views.zeroMin( source ), step );
dimensions = new long[ steps.length ];
max = new long[ steps.length ];
for ( int d = 0; d < steps.length; ++d )
{
steps[ d ] = step;
dimensions[ d ] = ( int )Math.ceil( ( double )source.dimension( d ) / step );
max[ d ] = dimensions[ d ] - 1;
}
}
public SubsampleIntervalView( final RandomAccessibleInterval< T > source, final long... steps )
{
super( Views.zeroMin( source ), steps );
dimensions = new long[ steps.length ];
max = new long[ steps.length ];
for ( int d = 0; d < steps.length; ++d )
{
this.steps[ d ] = steps[ d ];
dimensions[ d ] = ( int )Math.ceil( ( double )source.dimension( d ) / steps[ d ]);
max[ d ] = dimensions[ d ] - 1;
}
}
@Override
public long min( final int d )
{
return 0;
}
@Override
public void min( final long[] min )
{
for ( int d = 0; d < steps.length; ++d )
min[ d ] = 0;
}
@Override
public void min( final Positionable min )
{
for ( int d = 0; d < steps.length; ++d )
min.setPosition( 0, d );
}
@Override
public long max( final int d )
{
return max[ d ];
}
@Override
public void max( final long[] m )
{
for ( int d = 0; d < steps.length; ++d )
m[ d ] = this.max[ d ];
}
@Override
public void max( final Positionable m )
{
for ( int d = 0; d < steps.length; ++d )
m.setPosition( this.max[ d ], d );
}
@Override
public double realMin( final int d )
{
return 0;
}
@Override
public void realMin( final double[] min )
{
for ( int d = 0; d < steps.length; ++d )
min[ d ] = 0;
}
@Override
public void realMin( final RealPositionable min )
{
for ( int d = 0; d < steps.length; ++d )
min.setPosition( 0, d );
}
@Override
public double realMax( final int d )
{
return max[ d ];
}
@Override
public void realMax( final double[] m )
{
for ( int d = 0; d < steps.length; ++d )
m[ d ] = this.max[ d ];
}
@Override
public void realMax( final RealPositionable m )
{
for ( int d = 0; d < steps.length; ++d )
m.setPosition( this.max[ d ], d );
}
@Override
public void dimensions( final long[] dim )
{
for ( int d = 0; d < steps.length; ++d )
dim[ d ] = this.dimensions[ d ];
}
@Override
public long dimension( final int d )
{
return dimensions[ d ];
}
}