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Jmol: an open-source Java viewer for chemical structures in 3D
package javajs.util;
import java.io.BufferedWriter;
import java.io.ByteArrayOutputStream;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.OutputStream;
import java.io.OutputStreamWriter;
import javajs.J2SIgnoreImport;
import javajs.api.BytePoster;
import javajs.api.GenericOutputChannel;
import javajs.api.JmolObjectInterface;
/**
*
* A generic output method. JmolOutputChannel can be used to:
*
* add characters to a StringBuffer
* using fileName==null, append() and toString()
*
* add bytes utilizing ByteArrayOutputStream
* using writeBytes(), writeByteAsInt(), append()*, and bytesAsArray()
* *append() can be used as long as os==ByteArrayOutputStream
* or it is not used before one of the writeByte methods.
*
* output characters to a FileOutputStream
* using os==FileOutputStream, asWriter==true, append(), and closeChannel()
*
* output bytes to a FileOutputStream
* using os==FileOutputStream, writeBytes(), writeByteAsInt(), append(), and closeChannel()
*
* post characters or bytes to a remote server
* using fileName=="http://..." or "https://...",
* writeBytes(), writeByteAsInt(), append(), and closeChannel()
*
* send characters or bytes to a JavaScript function
* when JavaScript and (typeof fileName == "function")
*
* if fileName equals ";base64,", then the data are base64-encoded
* prior to writing, and closeChannel() returns the data.
*
* @author hansonr Bob Hanson [email protected] 9/2013
*
*
*/
@J2SIgnoreImport({ java.io.FileOutputStream.class })
public class OC extends OutputStream implements GenericOutputChannel {
private BytePoster bytePoster; // only necessary for writing to http:// or https://
private String fileName;
private BufferedWriter bw;
private boolean isLocalFile;
private int byteCount;
private boolean isCanceled;
private boolean closed;
private OutputStream os;
private SB sb;
private String type;
private boolean isBase64;
private OutputStream os0;
private byte[] bytes; // preset bytes; output only
public boolean bigEndian = true;
@Override
public boolean isBigEndian() {
return bigEndian;
}
public void setBigEndian(boolean TF) {
bigEndian = TF;
}
public OC setParams(BytePoster bytePoster, String fileName,
boolean asWriter, OutputStream os) {
this.bytePoster = bytePoster;
this.fileName = fileName;
isBase64 = ";base64,".equals(fileName);
if (isBase64) {
fileName = null;
os0 = os;
os = null;
}
this.os = os;
isLocalFile = (fileName != null && !isRemote(fileName));
if (asWriter && !isBase64 && os != null)
bw = new BufferedWriter(new OutputStreamWriter(os));
return this;
}
public OC setBytes(byte[] b) {
bytes = b;
return this;
}
public String getFileName() {
return fileName;
}
public String getName() {
return (fileName == null ? null : fileName.substring(fileName.lastIndexOf("/") + 1));
}
public int getByteCount() {
return byteCount;
}
/**
*
* @param type user-identified type (PNG, JPG, etc)
*/
public void setType(String type) {
this.type = type;
}
public String getType() {
return type;
}
/**
* will go to string buffer if bw == null and os == null
*
* @param s
* @return this, for chaining like a standard StringBuffer
*
*/
public OC append(String s) {
try {
if (bw != null) {
bw.write(s);
} else if (os == null) {
if (sb == null)
sb = new SB();
sb.append(s);
} else {
byte[] b = s.getBytes();
os.write(b, 0, b.length);
byteCount += b.length;
return this;
}
} catch (IOException e) {
// ignore
}
byteCount += s.length(); // not necessarily exactly correct if unicode
return this;
}
@Override
public void reset() {
sb = null;
initOS();
}
private void initOS() {
if (sb != null) {
String s = sb.toString();
reset();
append(s);
return;
}
try {
/**
* @j2sNative
*
* this.os = null;
*/
{
if (os instanceof FileOutputStream) {
os.close();
os = new FileOutputStream(fileName);
} else {
os = null;
}
}
if (os == null)
os = new ByteArrayOutputStream();
if (bw != null) {
bw.close();
bw = new BufferedWriter(new OutputStreamWriter(os));
}
} catch (Exception e) {
// not perfect here.
System.out.println(e.toString());
}
byteCount = 0;
}
/**
* @param b
*/
@Override
public void writeByteAsInt(int b) {
if (os == null)
initOS();
/**
* @j2sNative
*
* this.os.writeByteAsInt(b);
*
*/
{
try {
os.write(b);
} catch (IOException e) {
}
}
byteCount++;
}
/**
* @j2sOverride
*/
@Override
public void write(byte[] buf, int i, int len) {
if (os == null)
initOS();
if (len < 0)
len = buf.length - i;
try {
os.write(buf, i, len);
} catch (IOException e) {
}
byteCount += len;
}
@Override
public void writeShort(short i) {
if (isBigEndian()) {
writeByteAsInt(i >> 8);
writeByteAsInt(i);
} else {
writeByteAsInt(i);
writeByteAsInt(i >> 8);
}
}
@Override
public void writeLong(long b) {
if (isBigEndian()) {
writeInt((int) ((b >> 32) & 0xFFFFFFFFl));
writeInt((int) (b & 0xFFFFFFFFl));
} else {
writeByteAsInt((int) (b >> 56));
writeByteAsInt((int) (b >> 48));
writeByteAsInt((int) (b >> 40));
writeByteAsInt((int) (b >> 32));
writeByteAsInt((int) (b >> 24));
writeByteAsInt((int) (b >> 16));
writeByteAsInt((int) (b >> 8));
writeByteAsInt((int) b);
}
}
/**
* Will break JavaScript if used.
*
* @j2sIgnore
*
* @param b
*/
@Override
@Deprecated
public void write(int b) {
// required by standard ZipOutputStream -- do not use, as it will break JavaScript methods
if (os == null)
initOS();
try {
os.write(b);
} catch (IOException e) {
}
byteCount++;
}
// not in JSmol's OutputStream class, so not overriding
// /**
// * Will break if used; no equivalent in JavaScript.
// *
// * @j2sIgnore
// *
// * @param b
// */
// @Override
// @Deprecated
// public void write(byte[] b) {
// // not used in JavaScript due to overloading problem there
// write(b, 0, b.length);
// }
public void cancel() {
isCanceled = true;
closeChannel();
}
@Override
@SuppressWarnings({ "null", "unused" })
public String closeChannel() {
if (closed)
return null;
// can't cancel file writers
try {
if (bw != null) {
bw.flush();
bw.close();
} else if (os != null) {
os.flush();
os.close();
}
if (os0 != null && isCanceled) {
os0.flush();
os0.close();
}
} catch (Exception e) {
// ignore closing issues
}
if (isCanceled) {
closed = true;
return null;
}
if (fileName == null) {
if (isBase64) {
String s = getBase64();
if (os0 != null) {
os = os0;
append(s);
}
sb = new SB();
sb.append(s);
isBase64 = false;
return closeChannel();
}
return (sb == null ? null : sb.toString());
}
closed = true;
JmolObjectInterface jmol = null;
Object _function = null;
/**
* @j2sNative
*
* jmol = self.J2S || Jmol; _function = (typeof this.fileName == "function" ?
* this.fileName : null);
*
*/
{
if (!isLocalFile) {
String ret = postByteArray(); // unsigned applet could do this
if (ret.startsWith("java.net"))
byteCount = -1;
return ret;
}
}
if (jmol != null) {
Object data = (sb == null ? toByteArray() : sb.toString());
if (_function == null)
jmol._doAjax(fileName, null, data);
else
jmol._apply(fileName, data);
}
return null;
}
public boolean isBase64() {
return isBase64;
}
public String getBase64() {
return Base64.getBase64(toByteArray()).toString();
}
public byte[] toByteArray() {
return (bytes != null ? bytes : os instanceof ByteArrayOutputStream ? ((ByteArrayOutputStream)os).toByteArray() : null);
}
@Override
@Deprecated
public void close() {
closeChannel();
}
@Override
public String toString() {
if (bw != null)
try {
bw.flush();
} catch (IOException e) {
// TODO
}
if (sb != null)
return closeChannel();
return byteCount + " bytes";
}
private String postByteArray() {
byte[] bytes = (sb == null ? toByteArray() : sb.toString().getBytes());
return bytePoster.postByteArray(fileName, bytes);
}
public final static String[] urlPrefixes = { "http:", "https:", "sftp:", "ftp:",
"file:" };
// note that SFTP is not supported
public final static int URL_LOCAL = 4;
public static boolean isRemote(String fileName) {
if (fileName == null)
return false;
int itype = urlTypeIndex(fileName);
return (itype >= 0 && itype != URL_LOCAL);
}
public static boolean isLocal(String fileName) {
if (fileName == null)
return false;
int itype = urlTypeIndex(fileName);
return (itype < 0 || itype == URL_LOCAL);
}
public static int urlTypeIndex(String name) {
if (name == null)
return -2; // local unsigned applet
for (int i = 0; i < urlPrefixes.length; ++i) {
if (name.startsWith(urlPrefixes[i])) {
return i;
}
}
return -1;
}
@Override
public void writeInt(int i) {
if (bigEndian) {
writeByteAsInt(i >> 24);
writeByteAsInt(i >> 16);
writeByteAsInt(i >> 8);
writeByteAsInt(i);
} else {
writeByteAsInt(i);
writeByteAsInt(i >> 8);
writeByteAsInt(i >> 16);
writeByteAsInt(i >> 24);
}
}
public void writeFloat(float x) {
writeInt(x == 0 ? 0 : Float.floatToIntBits(x));
}
}