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HermiT is reasoner for ontologies written using the Web Ontology Language (OWL). Given an OWL file, HermiT can determine whether or not the ontology is consistent, identify subsumption relationships between classes, and much more.
This is the maven build of HermiT and is designed for people who wish to use HermiT from within the OWL API. It is now versioned in the main HermiT version repository, although not officially supported by the HermiT developers.
The version number of this package is a composite of the HermiT version and a value representing the OWLAPI release it is compatible with. Note that the group id for the upstream HermiT is com.hermit-reasoner, while this fork is released under net.sourceforge.owlapi.
This fork exists to allow HermiT users to use newer OWLAPI versions than the ones supported by the original HermiT codebase.
This package includes the Jautomata library (http://jautomata.sourceforge.net/), and builds with it directly. This library appears to be no longer under active development, and so a "fork" seems appropriate. No development is intended or anticipated on this code base.
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/* Copyright 2008, 2009, 2010 by the Oxford University Computing Laboratory
This file is part of HermiT.
HermiT is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
HermiT is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License
along with HermiT. If not, see .
*/
package org.semanticweb.HermiT.tableau;
import java.io.Serializable;
import org.semanticweb.HermiT.model.AtomicConcept;
import org.semanticweb.HermiT.model.AtomicNegationConcept;
import org.semanticweb.HermiT.model.AtomicNegationDataRange;
import org.semanticweb.HermiT.model.AtomicRole;
import org.semanticweb.HermiT.model.Inequality;
import org.semanticweb.HermiT.model.InternalDatatype;
import org.semanticweb.HermiT.model.LiteralConcept;
import org.semanticweb.HermiT.model.LiteralDataRange;
import org.semanticweb.HermiT.model.NegatedAtomicRole;
import org.semanticweb.HermiT.monitor.TableauMonitor;
/**
* An instance of this class is notified by extension tables when tuples are added. This class then
* detects whether the addition of a tuple caused a clash or not. Clashes are detected as soon as
* offending assertions are added to the extensions (i.e., they do not depend on delta-new).
* This is so for performance reasons: we want to detect a clash ASAP so that we can save
* ourselves unnecessary work.
*/
public final class ClashManager implements Serializable {
private static final long serialVersionUID = 3533809151139695892L;
protected static final LiteralDataRange NOT_RDFS_LITERAL=InternalDatatype.RDFS_LITERAL.getNegation();
protected final ExtensionManager m_extensionManager;
protected final ExtensionTable.Retrieval m_ternaryExtensionTableSearch01Bound;
protected final TableauMonitor m_tableauMonitor;
protected final Object[] m_binaryAuxiliaryTuple;
protected final Object[] m_ternaryAuxiliaryTuple;
protected final UnionDependencySet m_binaryUnionDependencySet;
/**
* @param tableau tableau
*/
public ClashManager(Tableau tableau) {
m_extensionManager=tableau.m_extensionManager;
m_ternaryExtensionTableSearch01Bound=m_extensionManager.m_ternaryExtensionTable.createRetrieval(new boolean[] { true,true,false },ExtensionTable.View.TOTAL);
m_tableauMonitor=tableau.m_tableauMonitor;
m_binaryAuxiliaryTuple=new Object[2];
m_ternaryAuxiliaryTuple=new Object[3];
m_binaryUnionDependencySet=new UnionDependencySet(2);
}
/**
* Clear.
*/
public void clear() {
m_ternaryExtensionTableSearch01Bound.clear();
m_binaryAuxiliaryTuple[0]=null;
m_binaryAuxiliaryTuple[1]=null;
m_ternaryAuxiliaryTuple[0]=null;
m_ternaryAuxiliaryTuple[1]=null;
m_ternaryAuxiliaryTuple[2]=null;
m_binaryUnionDependencySet.m_dependencySets[0]=null;
m_binaryUnionDependencySet.m_dependencySets[1]=null;
}
/**
* @param extensionTable extensionTable
* @param tuple tuple
* @param dependencySet dependencySet
*/
public void tupleAdded(ExtensionTable extensionTable,Object[] tuple,DependencySet dependencySet) {
Object dlPredicateObject=tuple[0];
Node node0=(Node)tuple[1];
if (AtomicConcept.NOTHING.equals(dlPredicateObject) || NOT_RDFS_LITERAL.equals(dlPredicateObject) || (Inequality.INSTANCE.equals(dlPredicateObject) && tuple[1]==tuple[2])) {
if (m_tableauMonitor!=null)
m_tableauMonitor.clashDetectionStarted(tuple);
m_extensionManager.setClash(dependencySet);
if (m_tableauMonitor!=null)
m_tableauMonitor.clashDetectionFinished(tuple);
}
else if ((dlPredicateObject instanceof InternalDatatype) || (dlPredicateObject instanceof AtomicNegationDataRange && ((AtomicNegationDataRange)dlPredicateObject).getNegatedDataRange() instanceof InternalDatatype) || (dlPredicateObject instanceof AtomicConcept && node0.m_numberOfNegatedAtomicConcepts>0) || (dlPredicateObject instanceof AtomicNegationConcept && node0.m_numberOfPositiveAtomicConcepts>0)) {
m_binaryAuxiliaryTuple[0]=dlPredicateObject instanceof LiteralDataRange ? ((LiteralDataRange)dlPredicateObject).getNegation() : ((LiteralConcept)dlPredicateObject).getNegation();
m_binaryAuxiliaryTuple[1]=node0;
if (extensionTable.containsTuple(m_binaryAuxiliaryTuple)) {
m_binaryUnionDependencySet.m_dependencySets[0]=dependencySet;
m_binaryUnionDependencySet.m_dependencySets[1]=extensionTable.getDependencySet(m_binaryAuxiliaryTuple);
if (m_tableauMonitor!=null)
m_tableauMonitor.clashDetectionStarted(tuple,m_binaryAuxiliaryTuple);
m_extensionManager.setClash(m_binaryUnionDependencySet);
if (m_tableauMonitor!=null)
m_tableauMonitor.clashDetectionFinished(tuple,m_binaryAuxiliaryTuple);
}
}
else if ((dlPredicateObject instanceof AtomicRole && node0.m_numberOfNegatedRoleAssertions>0) || (dlPredicateObject instanceof NegatedAtomicRole)) {
Object searchPredicate;
if (dlPredicateObject instanceof AtomicRole)
searchPredicate=NegatedAtomicRole.create((AtomicRole)dlPredicateObject);
else
searchPredicate=((NegatedAtomicRole)dlPredicateObject).getNegatedAtomicRole();
m_ternaryAuxiliaryTuple[0]=searchPredicate;
m_ternaryAuxiliaryTuple[1]=node0;
m_ternaryAuxiliaryTuple[2]=tuple[2];
if (extensionTable.containsTuple(m_ternaryAuxiliaryTuple)) {
m_binaryUnionDependencySet.m_dependencySets[0]=dependencySet;
m_binaryUnionDependencySet.m_dependencySets[1]=extensionTable.getDependencySet(m_ternaryAuxiliaryTuple);
if (m_tableauMonitor!=null)
m_tableauMonitor.clashDetectionStarted(tuple,m_ternaryAuxiliaryTuple);
m_extensionManager.setClash(m_binaryUnionDependencySet);
if (m_tableauMonitor!=null)
m_tableauMonitor.clashDetectionFinished(tuple,m_ternaryAuxiliaryTuple);
}
else if (!((Node)tuple[2]).getNodeType().isAbstract()) {
// If the second node is not abstract (i.e., if it is concrete), then we may need to generate inequalities.
m_ternaryAuxiliaryTuple[0]=Inequality.INSTANCE;
m_ternaryAuxiliaryTuple[1]=tuple[2];
m_binaryUnionDependencySet.m_dependencySets[0]=dependencySet;
m_ternaryExtensionTableSearch01Bound.getBindingsBuffer()[0]=searchPredicate;
m_ternaryExtensionTableSearch01Bound.getBindingsBuffer()[1]=tuple[1];
m_ternaryExtensionTableSearch01Bound.open();
Object[] tupleBuffer=m_ternaryExtensionTableSearch01Bound.getTupleBuffer();
while (!m_ternaryExtensionTableSearch01Bound.afterLast()) {
assert !((Node)tupleBuffer[2]).getNodeType().isAbstract();
m_ternaryAuxiliaryTuple[2]=tupleBuffer[2];
m_binaryUnionDependencySet.m_dependencySets[1]=m_ternaryExtensionTableSearch01Bound.getDependencySet();
if (m_tableauMonitor!=null)
m_tableauMonitor.clashDetectionStarted(tuple,tupleBuffer);
// Warning: the following call is reentrant. That is, we might be currently processing
// an addition on the extension manager, during which we then add another tuple.
// In general, such calls do not work. The added tuple is, however, quite simple,
// so such reentrant calls are OK. In order to prevent the reentrancy check in
// ExtensionManager, we go directly to the ternary table.
m_extensionManager.m_ternaryExtensionTable.addTuple(m_ternaryAuxiliaryTuple,m_binaryUnionDependencySet,true);
if (m_tableauMonitor!=null)
m_tableauMonitor.clashDetectionFinished(tuple,tupleBuffer);
m_ternaryExtensionTableSearch01Bound.next();
}
}
}
}
}