org.biojava.nbio.alignment.io.StockholmResidueAnnotation Maven / Gradle / Ivy
/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
* Created on August 13, 2010
* Author: Mark Chapman
*/
package org.biojava.nbio.alignment.io;
/**
* Stores all the content parsed from the #=GR lines
*
* @since 3.0.5
* @author Amr AL-Hossary
* @author Marko Vaz
*
*/
class StockholmResidueAnnotation {
//TODO use proper data types
private String secondaryStructure;
private String surfaceAccessibility;
private String transMembrane;
private String posteriorProbability;
private String ligandBinding;
private String activeSite;
private String asPFamPredicted;
private String asSwissProt;
private String intron;
public String getSecondaryStructure() {
return secondaryStructure;
}
public void setSecondaryStructure(String secondaryStructure) {
this.secondaryStructure = secondaryStructure;
}
public String getSurfaceAccessibility() {
return surfaceAccessibility;
}
public void setSurfaceAccessibility(String surfaceAccessibility) {
this.surfaceAccessibility = surfaceAccessibility;
}
public String getTransMembrane() {
return transMembrane;
}
public void setTransMembrane(String transMembrane) {
this.transMembrane = transMembrane;
}
public String getPosteriorProbability() {
return posteriorProbability;
}
public void setPosteriorProbability(String posteriorProbability) {
this.posteriorProbability = posteriorProbability;
}
public String getLigandBinding() {
return ligandBinding;
}
public void setLigandBinding(String ligandBinding) {
this.ligandBinding = ligandBinding;
}
public String getActiveSite() {
return activeSite;
}
public void setActiveSite(String activeSite) {
this.activeSite = activeSite;
}
public String getAsPFamPredicted() {
return asPFamPredicted;
}
public void setAsPFamPredicted(String asPFamPredicted) {
this.asPFamPredicted = asPFamPredicted;
}
public String getAsSwissProt() {
return asSwissProt;
}
public void setAsSwissProt(String asSwissProt) {
this.asSwissProt = asSwissProt;
}
public String getIntron() {
return intron;
}
public void setIntron(String intron) {
this.intron = intron;
}
}