org.biojava.nbio.alignment.template.CallableProfileProfileAligner Maven / Gradle / Ivy
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/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
* Created on July 9, 2010
* Author: Mark Chapman
*/
package org.biojava.nbio.alignment.template;
import org.biojava.nbio.core.alignment.template.ProfilePair;
import org.biojava.nbio.core.sequence.template.Compound;
import org.biojava.nbio.core.sequence.template.Sequence;
import java.util.concurrent.Callable;
/**
* Implements a concurrency wrapper for a {@link ProfileProfileAligner}.
*
* @author Mark Chapman
* @param each {@link Sequence} of the {@link Profile} pair is of type S
* @param each element of an {@link AlignedSequence} is a {@link Compound} of type C
*/
public class CallableProfileProfileAligner, C extends Compound>
implements Callable> {
private ProfileProfileAligner ppa;
/**
* Creates a profile-profile alignment task for simplified parallel execution.
*
* @param ppa already initialized profile-profile aligner
*/
public CallableProfileProfileAligner(ProfileProfileAligner ppa) {
this.ppa = ppa;
}
@Override
public ProfilePair call() {
return ppa.getPair();
}
}