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• nuc-4_2.txt

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matrices.nuc-4_2.txt Maven / Gradle / Ivy

#
# This matrix was created by Todd Lowe   12/10/92
#
# Uses ambiguous nucleotide codes, probabilities rounded to
#  nearest integer
#
# Lowest score = -4, Highest score = 5
#
    A   T   G   C  
A   5  -4  -4  -4 
T  -4   5  -4  -4 
G  -4  -4   5  -4 
C  -4  -4  -4   5 
S  -4  -4   1   1 
W   1   1  -4  -4 
R   1  -4   1  -4 
Y  -4   1  -4   1 
K  -4   1   1  -4 
M   1  -4  -4   1 
B  -4  -1  -1  -1 
V  -1  -4  -1  -1 
H  -1  -1  -4  -1 
D  -1  -1  -1  -4 
N  -2  -2  -2  -2