demo.ShowStructureInJmol Maven / Gradle / Ivy
/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
*/
package demo;
import org.biojava.nbio.structure.Structure;
import org.biojava.nbio.structure.align.gui.jmol.StructureAlignmentJmol;
import org.biojava.nbio.structure.StructureIO;
/** Demo how to load and display a structure in Jmol
*
* @author Andreas Prlic
*
*/
public class ShowStructureInJmol {
public static void main(String[] args){
try {
Structure struc = StructureIO.getStructure("1aoi");
StructureAlignmentJmol jmolPanel = new StructureAlignmentJmol();
jmolPanel.setStructure(struc);
// send some RASMOL style commands to Jmol
jmolPanel.evalString("select * ; color chain;");
jmolPanel.evalString("select nucleic; cartoon on;");
jmolPanel.evalString("select *; spacefill off; wireframe off; cartoon on; ");
} catch (Exception e){
e.printStackTrace();
}
}
}