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The Bouncy Castle Crypto package is a Java implementation of cryptographic algorithms. This jar contains JCE provider and lightweight API for the Bouncy Castle Cryptography APIs for JDK 1.5 to JDK 1.8.

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package org.bouncycastle.pqc.crypto.xmss;

import java.io.ByteArrayInputStream;
import java.io.ByteArrayOutputStream;
import java.io.IOException;
import java.io.InputStream;
import java.io.InvalidClassException;
import java.io.ObjectInputStream;
import java.io.ObjectOutputStream;
import java.io.ObjectStreamClass;
import java.util.HashSet;
import java.util.Set;

import org.bouncycastle.crypto.Digest;
import org.bouncycastle.util.Arrays;
import org.bouncycastle.util.encoders.Hex;

/**
 * Utils for XMSS implementation.
 */
public class XMSSUtil
{

    /**
     * Calculates the logarithm base 2 for a given Integer.
     *
     * @param n Number.
     * @return Logarithm to base 2 of {@code n}.
     */
    public static int log2(int n)
    {
        int log = 0;
        while ((n >>= 1) != 0)
        {
            log++;
        }
        return log;
    }

    /**
     * Convert int/long to n-byte array.
     *
     * @param value      int/long value.
     * @param sizeInByte Size of byte array in byte.
     * @return int/long as big-endian byte array of size {@code sizeInByte}.
     */
    public static byte[] toBytesBigEndian(long value, int sizeInByte)
    {
        byte[] out = new byte[sizeInByte];
        for (int i = (sizeInByte - 1); i >= 0; i--)
        {
            out[i] = (byte)value;
            value >>>= 8;
        }
        return out;
    }

    /*
     * Copy long to byte array in big-endian at specific offset.
     */
    public static void longToBigEndian(long value, byte[] in, int offset)
    {
        if (in == null)
        {
            throw new NullPointerException("in == null");
        }
        if ((in.length - offset) < 8)
        {
            throw new IllegalArgumentException("not enough space in array");
        }
        in[offset] = (byte)((value >> 56) & 0xff);
        in[offset + 1] = (byte)((value >> 48) & 0xff);
        in[offset + 2] = (byte)((value >> 40) & 0xff);
        in[offset + 3] = (byte)((value >> 32) & 0xff);
        in[offset + 4] = (byte)((value >> 24) & 0xff);
        in[offset + 5] = (byte)((value >> 16) & 0xff);
        in[offset + 6] = (byte)((value >> 8) & 0xff);
        in[offset + 7] = (byte)((value) & 0xff);
    }

    /*
     * Generic convert from big endian byte array to long.
     */
    public static long bytesToXBigEndian(byte[] in, int offset, int size)
    {
        if (in == null)
        {
            throw new NullPointerException("in == null");
        }
        long res = 0;
        for (int i = offset; i < (offset + size); i++)
        {
            res = (res << 8) | (in[i] & 0xff);
        }
        return res;
    }

    /**
     * Clone a byte array.
     *
     * @param in byte array.
     * @return Copy of byte array.
     */
    public static byte[] cloneArray(byte[] in)
    {
        if (in == null)
        {
            throw new NullPointerException("in == null");
        }
        byte[] out = new byte[in.length];
        System.arraycopy(in, 0, out, 0, in.length);
        return out;
    }

    /**
     * Clone a 2d byte array.
     *
     * @param in 2d byte array.
     * @return Copy of 2d byte array.
     */
    public static byte[][] cloneArray(byte[][] in)
    {
        if (hasNullPointer(in))
        {
            throw new NullPointerException("in has null pointers");
        }
        byte[][] out = new byte[in.length][];
        for (int i = 0; i < in.length; i++)
        {
            out[i] = new byte[in[i].length];
            System.arraycopy(in[i], 0, out[i], 0, in[i].length);
        }
        return out;
    }

    /**
     * Compares two 2d-byte arrays.
     *
     * @param a 2d-byte array 1.
     * @param b 2d-byte array 2.
     * @return true if all values in 2d-byte array are equal false else.
     */
    public static boolean areEqual(byte[][] a, byte[][] b)
    {
        if (hasNullPointer(a) || hasNullPointer(b))
        {
            throw new NullPointerException("a or b == null");
        }
        for (int i = 0; i < a.length; i++)
        {
            if (!Arrays.areEqual(a[i], b[i]))
            {
                return false;
            }
        }
        return true;
    }

    /**
     * Dump content of 2d byte array.
     *
     * @param x byte array.
     */
    public static void dumpByteArray(byte[][] x)
    {
        if (hasNullPointer(x))
        {
            throw new NullPointerException("x has null pointers");
        }
        for (int i = 0; i < x.length; i++)
        {
            System.out.println(Hex.toHexString(x[i]));
        }
    }

    /**
     * Checks whether 2d byte array has null pointers.
     *
     * @param in 2d byte array.
     * @return true if at least one null pointer is found false else.
     */
    public static boolean hasNullPointer(byte[][] in)
    {
        if (in == null)
        {
            return true;
        }
        for (int i = 0; i < in.length; i++)
        {
            if (in[i] == null)
            {
                return true;
            }
        }
        return false;
    }

    /**
     * Copy src byte array to dst byte array at offset.
     *
     * @param dst    Destination.
     * @param src    Source.
     * @param offset Destination offset.
     */
    public static void copyBytesAtOffset(byte[] dst, byte[] src, int offset)
    {
        if (dst == null)
        {
            throw new NullPointerException("dst == null");
        }
        if (src == null)
        {
            throw new NullPointerException("src == null");
        }
        if (offset < 0)
        {
            throw new IllegalArgumentException("offset hast to be >= 0");
        }
        if ((src.length + offset) > dst.length)
        {
            throw new IllegalArgumentException("src length + offset must not be greater than size of destination");
        }
        for (int i = 0; i < src.length; i++)
        {
            dst[offset + i] = src[i];
        }
    }

    /**
     * Copy length bytes at position offset from src.
     *
     * @param src    Source byte array.
     * @param offset Offset in source byte array.
     * @param length Length of bytes to copy.
     * @return New byte array.
     */
    public static byte[] extractBytesAtOffset(byte[] src, int offset, int length)
    {
        if (src == null)
        {
            throw new NullPointerException("src == null");
        }
        if (offset < 0)
        {
            throw new IllegalArgumentException("offset hast to be >= 0");
        }
        if (length < 0)
        {
            throw new IllegalArgumentException("length hast to be >= 0");
        }
        if ((offset + length) > src.length)
        {
            throw new IllegalArgumentException("offset + length must not be greater then size of source array");
        }
        byte[] out = new byte[length];
        for (int i = 0; i < out.length; i++)
        {
            out[i] = src[offset + i];
        }
        return out;
    }

    /**
     * Check whether an index is valid or not.
     *
     * @param height Height of binary tree.
     * @param index  Index to validate.
     * @return true if index is valid false else.
     */
    public static boolean isIndexValid(int height, long index)
    {
        if (index < 0)
        {
            throw new IllegalStateException("index must not be negative");
        }
        return index < (1L << height);
    }

    /**
     * Determine digest size of digest.
     *
     * @param digest Digest.
     * @return Digest size.
     */
    public static int getDigestSize(Digest digest)
    {
        if (digest == null)
        {
            throw new NullPointerException("digest == null");
        }
        String algorithmName = digest.getAlgorithmName();
        if (algorithmName.equals("SHAKE128"))
        {
            return 32;
        }
        if (algorithmName.equals("SHAKE256"))
        {
            return 64;
        }
        return digest.getDigestSize();
    }

    public static long getTreeIndex(long index, int xmssTreeHeight)
    {
        return index >> xmssTreeHeight;
    }

    public static int getLeafIndex(long index, int xmssTreeHeight)
    {
        return (int)(index & ((1L << xmssTreeHeight) - 1L));
    }

    public static byte[] serialize(Object obj)
        throws IOException
    {
        ByteArrayOutputStream out = new ByteArrayOutputStream();
        ObjectOutputStream oos = new ObjectOutputStream(out);
        oos.writeObject(obj);
        oos.flush();
        return out.toByteArray();
    }

    public static Object deserialize(byte[] data, final Class clazz)
        throws IOException, ClassNotFoundException
    {
        ByteArrayInputStream in = new ByteArrayInputStream(data);
        ObjectInputStream is = new CheckingStream(clazz, in);

        Object obj = is.readObject();

        if (is.available() != 0)
        {
            throw new IOException("unexpected data found at end of ObjectInputStream");
        }
        // you'd hope this would always succeed!
        if (clazz.isInstance(obj))
        {
            return obj;
        }
        else
        {
            throw new IOException("unexpected class found in ObjectInputStream");
        }
    }

    public static int calculateTau(int index, int height)
    {
        int tau = 0;
        for (int i = 0; i < height; i++)
        {
            if (((index >> i) & 1) == 0)
            {
                tau = i;
                break;
            }
        }
        return tau;
    }

    public static boolean isNewBDSInitNeeded(long globalIndex, int xmssHeight, int layer)
    {
        if (globalIndex == 0)
        {
            return false;
        }
        return (globalIndex % (long)Math.pow((1 << xmssHeight), layer + 1) == 0) ? true : false;
    }

    public static boolean isNewAuthenticationPathNeeded(long globalIndex, int xmssHeight, int layer)
    {
        if (globalIndex == 0)
        {
            return false;
        }
        return ((globalIndex + 1) % (long)Math.pow((1 << xmssHeight), layer) == 0) ? true : false;
    }

    private static class CheckingStream
       extends ObjectInputStream
    {
        private static final Set components = new HashSet();

        static
        {
            components.add("java.util.TreeMap");
            components.add("java.lang.Integer");
            components.add("java.lang.Number");
            components.add("org.bouncycastle.pqc.crypto.xmss.BDS");
            components.add("java.util.ArrayList");
            components.add("org.bouncycastle.pqc.crypto.xmss.XMSSNode");
            components.add("[B");
            components.add("java.util.LinkedList");
            components.add("java.util.Stack");
            components.add("java.util.Vector");
            components.add("[Ljava.lang.Object;");
            components.add("org.bouncycastle.pqc.crypto.xmss.BDSTreeHash");
        }

        private final Class mainClass;
        private boolean found = false;

        CheckingStream(Class mainClass, InputStream in)
            throws IOException
        {
            super(in);

            this.mainClass = mainClass;
        }

        protected Class resolveClass(ObjectStreamClass desc)
            throws IOException,
            ClassNotFoundException
        {
            if (!found)
            {
                if (!desc.getName().equals(mainClass.getName()))
                {
                    throw new InvalidClassException(
                        "unexpected class: ", desc.getName());
                }
                else
                {
                    found = true;
                }
            }
            else
            {
                if (!components.contains(desc.getName()))
                {
                    throw new InvalidClassException(
                          "unexpected class: ", desc.getName());
                }
            }
            return super.resolveClass(desc);
        }
    }
}




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