org.github.evenjn.align.TupleAligner Maven / Gradle / Ivy
/**
*
* Copyright 2016 Marco Trevisan
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*/
package org.github.evenjn.align;
import org.github.evenjn.yarn.Di;
import org.github.evenjn.yarn.Tuple;
/**
* Given two sequences Alpha and Beta, returns a sequence of alignment data.
*
*/
public interface TupleAligner {
/**
* Returns an alignment.
*
* @param a
* a tuple
* @param b
* another tuple
* @return a tuple of pairs. each pair contains the length of a subtuple above
* and the length of the corresponding subtuple below.
*/
Tuple> align( Tuple a, Tuple b );
}