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• readsets_2.10
• 1.0.3
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• Base.scala

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org.hammerlab.genomics.readsets.args.Base.scala Maven / Gradle / Ivy

package org.hammerlab.genomics.readsets.args

import org.hammerlab.genomics.readsets.PerSample
import org.hammerlab.genomics.readsets.io.{Input, ReadFilterArgs}

trait Base
  extends ReadFilterArgs
    with NoSequenceDictionaryArgs {

  def paths: Array[String]
  def sampleNames: Array[String]

  lazy val inputs: PerSample[Input] = {
    paths.indices.map(i =>
      Input(
        i,
        if (i < sampleNames.length)
          sampleNames(i)
        else
          paths(i),
        paths(i)
      )
    )
  }
}