org.intermine.model.bio.CrossReferenceShadow Maven / Gradle / Ivy
package org.intermine.model.bio;
import org.intermine.objectstore.ObjectStore;
import org.intermine.objectstore.intermine.NotXmlParser;
import org.intermine.objectstore.intermine.NotXmlRenderer;
import org.intermine.objectstore.proxy.ProxyReference;
import org.intermine.model.StringConstructor;
import org.intermine.metadata.TypeUtil;
import org.intermine.util.DynamicUtil;
import org.intermine.model.ShadowClass;
public class CrossReferenceShadow implements CrossReference, ShadowClass
{
public static final Class shadowOf = CrossReference.class;
// Attr: org.intermine.model.bio.CrossReference.identifier
protected java.lang.String identifier;
public java.lang.String getIdentifier() { return identifier; }
public void setIdentifier(final java.lang.String identifier) { this.identifier = identifier; }
// Ref: org.intermine.model.bio.CrossReference.source
protected org.intermine.model.InterMineObject source;
public org.intermine.model.bio.DataSource getSource() { if (source instanceof org.intermine.objectstore.proxy.ProxyReference) { return ((org.intermine.model.bio.DataSource) ((org.intermine.objectstore.proxy.ProxyReference) source).getObject()); }; return (org.intermine.model.bio.DataSource) source; }
public void setSource(final org.intermine.model.bio.DataSource source) { this.source = source; }
public void proxySource(final org.intermine.objectstore.proxy.ProxyReference source) { this.source = source; }
public org.intermine.model.InterMineObject proxGetSource() { return source; }
// Ref: org.intermine.model.bio.CrossReference.subject
protected org.intermine.model.InterMineObject subject;
public org.intermine.model.bio.BioEntity getSubject() { if (subject instanceof org.intermine.objectstore.proxy.ProxyReference) { return ((org.intermine.model.bio.BioEntity) ((org.intermine.objectstore.proxy.ProxyReference) subject).getObject()); }; return (org.intermine.model.bio.BioEntity) subject; }
public void setSubject(final org.intermine.model.bio.BioEntity subject) { this.subject = subject; }
public void proxySubject(final org.intermine.objectstore.proxy.ProxyReference subject) { this.subject = subject; }
public org.intermine.model.InterMineObject proxGetSubject() { return subject; }
// Attr: org.intermine.model.InterMineObject.id
protected java.lang.Integer id;
public java.lang.Integer getId() { return id; }
public void setId(final java.lang.Integer id) { this.id = id; }
@Override public boolean equals(Object o) { return (o instanceof CrossReference && id != null) ? id.equals(((CrossReference)o).getId()) : this == o; }
@Override public int hashCode() { return (id != null) ? id.hashCode() : super.hashCode(); }
@Override public String toString() { return "CrossReference [id=" + id + ", identifier=" + (identifier == null ? "null" : "\"" + identifier + "\"") + ", source=" + (source == null ? "null" : (source.getId() == null ? "no id" : source.getId().toString())) + ", subject=" + (subject == null ? "null" : (subject.getId() == null ? "no id" : subject.getId().toString())) + "]"; }
public Object getFieldValue(final String fieldName) throws IllegalAccessException {
if ("identifier".equals(fieldName)) {
return identifier;
}
if ("source".equals(fieldName)) {
if (source instanceof ProxyReference) {
return ((ProxyReference) source).getObject();
} else {
return source;
}
}
if ("subject".equals(fieldName)) {
if (subject instanceof ProxyReference) {
return ((ProxyReference) subject).getObject();
} else {
return subject;
}
}
if ("id".equals(fieldName)) {
return id;
}
if (!org.intermine.model.bio.CrossReference.class.equals(getClass())) {
return TypeUtil.getFieldValue(this, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
public Object getFieldProxy(final String fieldName) throws IllegalAccessException {
if ("identifier".equals(fieldName)) {
return identifier;
}
if ("source".equals(fieldName)) {
return source;
}
if ("subject".equals(fieldName)) {
return subject;
}
if ("id".equals(fieldName)) {
return id;
}
if (!org.intermine.model.bio.CrossReference.class.equals(getClass())) {
return TypeUtil.getFieldProxy(this, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
public void setFieldValue(final String fieldName, final Object value) {
if ("identifier".equals(fieldName)) {
identifier = (java.lang.String) value;
} else if ("source".equals(fieldName)) {
source = (org.intermine.model.InterMineObject) value;
} else if ("subject".equals(fieldName)) {
subject = (org.intermine.model.InterMineObject) value;
} else if ("id".equals(fieldName)) {
id = (java.lang.Integer) value;
} else {
if (!org.intermine.model.bio.CrossReference.class.equals(getClass())) {
DynamicUtil.setFieldValue(this, fieldName, value);
return;
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
}
public Class getFieldType(final String fieldName) {
if ("identifier".equals(fieldName)) {
return java.lang.String.class;
}
if ("source".equals(fieldName)) {
return org.intermine.model.bio.DataSource.class;
}
if ("subject".equals(fieldName)) {
return org.intermine.model.bio.BioEntity.class;
}
if ("id".equals(fieldName)) {
return java.lang.Integer.class;
}
if (!org.intermine.model.bio.CrossReference.class.equals(getClass())) {
return TypeUtil.getFieldType(org.intermine.model.bio.CrossReference.class, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
public StringConstructor getoBJECT() {
if (!org.intermine.model.bio.CrossReferenceShadow.class.equals(getClass())) {
return NotXmlRenderer.render(this);
}
StringConstructor sb = new StringConstructor();
sb.append("$_^org.intermine.model.bio.CrossReference");
if (identifier != null) {
sb.append("$_^aidentifier$_^");
String string = identifier;
while (string != null) {
int delimPosition = string.indexOf("$_^");
if (delimPosition == -1) {
sb.append(string);
string = null;
} else {
sb.append(string.substring(0, delimPosition + 3));
sb.append("d");
string = string.substring(delimPosition + 3);
}
}
}
if (source != null) {
sb.append("$_^rsource$_^").append(source.getId());
}
if (subject != null) {
sb.append("$_^rsubject$_^").append(subject.getId());
}
if (id != null) {
sb.append("$_^aid$_^").append(id);
}
return sb;
}
public void setoBJECT(String notXml, ObjectStore os) {
setoBJECT(NotXmlParser.SPLITTER.split(notXml), os);
}
public void setoBJECT(final String[] notXml, final ObjectStore os) {
if (!org.intermine.model.bio.CrossReferenceShadow.class.equals(getClass())) {
throw new IllegalStateException("Class " + getClass().getName() + " does not match code (org.intermine.model.bio.CrossReference)");
}
for (int i = 2; i < notXml.length;) {
int startI = i;
if ((i < notXml.length) && "aidentifier".equals(notXml[i])) {
i++;
StringBuilder string = null;
while ((i + 1 < notXml.length) && (notXml[i + 1].charAt(0) == 'd')) {
if (string == null) string = new StringBuilder(notXml[i]);
i++;
string.append("$_^").append(notXml[i].substring(1));
}
identifier = string == null ? notXml[i] : string.toString();
i++;
}
if ((i < notXml.length) &&"rsource".equals(notXml[i])) {
i++;
source = new ProxyReference(os, Integer.valueOf(notXml[i]), org.intermine.model.bio.DataSource.class);
i++;
};
if ((i < notXml.length) &&"rsubject".equals(notXml[i])) {
i++;
subject = new ProxyReference(os, Integer.valueOf(notXml[i]), org.intermine.model.bio.BioEntity.class);
i++;
};
if ((i < notXml.length) && "aid".equals(notXml[i])) {
i++;
id = Integer.valueOf(notXml[i]);
i++;
}
if (startI == i) {
throw new IllegalArgumentException("Unknown field " + notXml[i]);
}
}
}
public void addCollectionElement(final String fieldName, final org.intermine.model.InterMineObject element) {
{
if (!org.intermine.model.bio.CrossReference.class.equals(getClass())) {
TypeUtil.addCollectionElement(this, fieldName, element);
return;
}
throw new IllegalArgumentException("Unknown collection " + fieldName);
}
}
public Class getElementType(final String fieldName) {
if (!org.intermine.model.bio.CrossReference.class.equals(getClass())) {
return TypeUtil.getElementType(org.intermine.model.bio.CrossReference.class, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
}