org.intermine.model.bio.LocationShadow Maven / Gradle / Ivy
package org.intermine.model.bio;
import org.intermine.objectstore.ObjectStore;
import org.intermine.objectstore.intermine.NotXmlParser;
import org.intermine.objectstore.intermine.NotXmlRenderer;
import org.intermine.objectstore.proxy.ProxyCollection;
import org.intermine.objectstore.proxy.ProxyReference;
import org.intermine.model.StringConstructor;
import org.intermine.metadata.TypeUtil;
import org.intermine.util.DynamicUtil;
import org.intermine.model.ShadowClass;
public class LocationShadow implements Location, ShadowClass
{
public static final Class shadowOf = Location.class;
// Attr: org.intermine.model.bio.Location.strand
protected java.lang.String strand;
public java.lang.String getStrand() { return strand; }
public void setStrand(final java.lang.String strand) { this.strand = strand; }
// Attr: org.intermine.model.bio.Location.start
protected java.lang.Integer start;
public java.lang.Integer getStart() { return start; }
public void setStart(final java.lang.Integer start) { this.start = start; }
// Attr: org.intermine.model.bio.Location.end
protected java.lang.Integer end;
public java.lang.Integer getEnd() { return end; }
public void setEnd(final java.lang.Integer end) { this.end = end; }
// Ref: org.intermine.model.bio.Location.locatedOn
protected org.intermine.model.InterMineObject locatedOn;
public org.intermine.model.bio.BioEntity getLocatedOn() { if (locatedOn instanceof org.intermine.objectstore.proxy.ProxyReference) { return ((org.intermine.model.bio.BioEntity) ((org.intermine.objectstore.proxy.ProxyReference) locatedOn).getObject()); }; return (org.intermine.model.bio.BioEntity) locatedOn; }
public void setLocatedOn(final org.intermine.model.bio.BioEntity locatedOn) { this.locatedOn = locatedOn; }
public void proxyLocatedOn(final org.intermine.objectstore.proxy.ProxyReference locatedOn) { this.locatedOn = locatedOn; }
public org.intermine.model.InterMineObject proxGetLocatedOn() { return locatedOn; }
// Ref: org.intermine.model.bio.Location.feature
protected org.intermine.model.InterMineObject feature;
public org.intermine.model.bio.BioEntity getFeature() { if (feature instanceof org.intermine.objectstore.proxy.ProxyReference) { return ((org.intermine.model.bio.BioEntity) ((org.intermine.objectstore.proxy.ProxyReference) feature).getObject()); }; return (org.intermine.model.bio.BioEntity) feature; }
public void setFeature(final org.intermine.model.bio.BioEntity feature) { this.feature = feature; }
public void proxyFeature(final org.intermine.objectstore.proxy.ProxyReference feature) { this.feature = feature; }
public org.intermine.model.InterMineObject proxGetFeature() { return feature; }
// Col: org.intermine.model.bio.Location.dataSets
protected java.util.Set dataSets = new java.util.HashSet();
public java.util.Set getDataSets() { return dataSets; }
public void setDataSets(final java.util.Set dataSets) { this.dataSets = dataSets; }
public void addDataSets(final org.intermine.model.bio.DataSet arg) { dataSets.add(arg); }
// Attr: org.intermine.model.InterMineObject.id
protected java.lang.Integer id;
public java.lang.Integer getId() { return id; }
public void setId(final java.lang.Integer id) { this.id = id; }
@Override public boolean equals(Object o) { return (o instanceof Location && id != null) ? id.equals(((Location)o).getId()) : this == o; }
@Override public int hashCode() { return (id != null) ? id.hashCode() : super.hashCode(); }
@Override public String toString() { return "Location [end=" + end + ", feature=" + (feature == null ? "null" : (feature.getId() == null ? "no id" : feature.getId().toString())) + ", id=" + id + ", locatedOn=" + (locatedOn == null ? "null" : (locatedOn.getId() == null ? "no id" : locatedOn.getId().toString())) + ", start=" + start + ", strand=" + (strand == null ? "null" : "\"" + strand + "\"") + "]"; }
public Object getFieldValue(final String fieldName) throws IllegalAccessException {
if ("strand".equals(fieldName)) {
return strand;
}
if ("start".equals(fieldName)) {
return start;
}
if ("end".equals(fieldName)) {
return end;
}
if ("locatedOn".equals(fieldName)) {
if (locatedOn instanceof ProxyReference) {
return ((ProxyReference) locatedOn).getObject();
} else {
return locatedOn;
}
}
if ("feature".equals(fieldName)) {
if (feature instanceof ProxyReference) {
return ((ProxyReference) feature).getObject();
} else {
return feature;
}
}
if ("dataSets".equals(fieldName)) {
return dataSets;
}
if ("id".equals(fieldName)) {
return id;
}
if (!org.intermine.model.bio.Location.class.equals(getClass())) {
return TypeUtil.getFieldValue(this, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
public Object getFieldProxy(final String fieldName) throws IllegalAccessException {
if ("strand".equals(fieldName)) {
return strand;
}
if ("start".equals(fieldName)) {
return start;
}
if ("end".equals(fieldName)) {
return end;
}
if ("locatedOn".equals(fieldName)) {
return locatedOn;
}
if ("feature".equals(fieldName)) {
return feature;
}
if ("dataSets".equals(fieldName)) {
return dataSets;
}
if ("id".equals(fieldName)) {
return id;
}
if (!org.intermine.model.bio.Location.class.equals(getClass())) {
return TypeUtil.getFieldProxy(this, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
public void setFieldValue(final String fieldName, final Object value) {
if ("strand".equals(fieldName)) {
strand = (java.lang.String) value;
} else if ("start".equals(fieldName)) {
start = (java.lang.Integer) value;
} else if ("end".equals(fieldName)) {
end = (java.lang.Integer) value;
} else if ("locatedOn".equals(fieldName)) {
locatedOn = (org.intermine.model.InterMineObject) value;
} else if ("feature".equals(fieldName)) {
feature = (org.intermine.model.InterMineObject) value;
} else if ("dataSets".equals(fieldName)) {
dataSets = (java.util.Set) value;
} else if ("id".equals(fieldName)) {
id = (java.lang.Integer) value;
} else {
if (!org.intermine.model.bio.Location.class.equals(getClass())) {
DynamicUtil.setFieldValue(this, fieldName, value);
return;
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
}
public Class getFieldType(final String fieldName) {
if ("strand".equals(fieldName)) {
return java.lang.String.class;
}
if ("start".equals(fieldName)) {
return java.lang.Integer.class;
}
if ("end".equals(fieldName)) {
return java.lang.Integer.class;
}
if ("locatedOn".equals(fieldName)) {
return org.intermine.model.bio.BioEntity.class;
}
if ("feature".equals(fieldName)) {
return org.intermine.model.bio.BioEntity.class;
}
if ("dataSets".equals(fieldName)) {
return java.util.Set.class;
}
if ("id".equals(fieldName)) {
return java.lang.Integer.class;
}
if (!org.intermine.model.bio.Location.class.equals(getClass())) {
return TypeUtil.getFieldType(org.intermine.model.bio.Location.class, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
public StringConstructor getoBJECT() {
if (!org.intermine.model.bio.LocationShadow.class.equals(getClass())) {
return NotXmlRenderer.render(this);
}
StringConstructor sb = new StringConstructor();
sb.append("$_^org.intermine.model.bio.Location");
if (strand != null) {
sb.append("$_^astrand$_^");
String string = strand;
while (string != null) {
int delimPosition = string.indexOf("$_^");
if (delimPosition == -1) {
sb.append(string);
string = null;
} else {
sb.append(string.substring(0, delimPosition + 3));
sb.append("d");
string = string.substring(delimPosition + 3);
}
}
}
if (start != null) {
sb.append("$_^astart$_^").append(start);
}
if (end != null) {
sb.append("$_^aend$_^").append(end);
}
if (locatedOn != null) {
sb.append("$_^rlocatedOn$_^").append(locatedOn.getId());
}
if (feature != null) {
sb.append("$_^rfeature$_^").append(feature.getId());
}
if (id != null) {
sb.append("$_^aid$_^").append(id);
}
return sb;
}
public void setoBJECT(String notXml, ObjectStore os) {
setoBJECT(NotXmlParser.SPLITTER.split(notXml), os);
}
public void setoBJECT(final String[] notXml, final ObjectStore os) {
if (!org.intermine.model.bio.LocationShadow.class.equals(getClass())) {
throw new IllegalStateException("Class " + getClass().getName() + " does not match code (org.intermine.model.bio.Location)");
}
for (int i = 2; i < notXml.length;) {
int startI = i;
if ((i < notXml.length) && "astrand".equals(notXml[i])) {
i++;
StringBuilder string = null;
while ((i + 1 < notXml.length) && (notXml[i + 1].charAt(0) == 'd')) {
if (string == null) string = new StringBuilder(notXml[i]);
i++;
string.append("$_^").append(notXml[i].substring(1));
}
strand = string == null ? notXml[i] : string.toString();
i++;
}
if ((i < notXml.length) && "astart".equals(notXml[i])) {
i++;
start = Integer.valueOf(notXml[i]);
i++;
}
if ((i < notXml.length) && "aend".equals(notXml[i])) {
i++;
end = Integer.valueOf(notXml[i]);
i++;
}
if ((i < notXml.length) &&"rlocatedOn".equals(notXml[i])) {
i++;
locatedOn = new ProxyReference(os, Integer.valueOf(notXml[i]), org.intermine.model.bio.BioEntity.class);
i++;
};
if ((i < notXml.length) &&"rfeature".equals(notXml[i])) {
i++;
feature = new ProxyReference(os, Integer.valueOf(notXml[i]), org.intermine.model.bio.BioEntity.class);
i++;
};
if ((i < notXml.length) && "aid".equals(notXml[i])) {
i++;
id = Integer.valueOf(notXml[i]);
i++;
}
if (startI == i) {
throw new IllegalArgumentException("Unknown field " + notXml[i]);
}
}
dataSets = new ProxyCollection(os, this, "dataSets", org.intermine.model.bio.DataSet.class);
}
public void addCollectionElement(final String fieldName, final org.intermine.model.InterMineObject element) {
if ("dataSets".equals(fieldName)) {
dataSets.add((org.intermine.model.bio.DataSet) element);
} else {
if (!org.intermine.model.bio.Location.class.equals(getClass())) {
TypeUtil.addCollectionElement(this, fieldName, element);
return;
}
throw new IllegalArgumentException("Unknown collection " + fieldName);
}
}
public Class getElementType(final String fieldName) {
if ("dataSets".equals(fieldName)) {
return org.intermine.model.bio.DataSet.class;
}
if (!org.intermine.model.bio.Location.class.equals(getClass())) {
return TypeUtil.getElementType(org.intermine.model.bio.Location.class, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
}