org.intermine.model.bio.SequenceVariantShadow Maven / Gradle / Ivy
package org.intermine.model.bio;
import org.intermine.objectstore.ObjectStore;
import org.intermine.objectstore.intermine.NotXmlParser;
import org.intermine.objectstore.intermine.NotXmlRenderer;
import org.intermine.objectstore.proxy.ProxyCollection;
import org.intermine.model.StringConstructor;
import org.intermine.metadata.TypeUtil;
import org.intermine.util.DynamicUtil;
import org.intermine.model.ShadowClass;
public class SequenceVariantShadow implements SequenceVariant, ShadowClass
{
public static final Class shadowOf = SequenceVariant.class;
// Col: org.intermine.model.bio.SequenceVariant.genes
protected java.util.Set genes = new java.util.HashSet();
public java.util.Set getGenes() { return genes; }
public void setGenes(final java.util.Set genes) { this.genes = genes; }
public void addGenes(final org.intermine.model.bio.Gene arg) { genes.add(arg); }
// Attr: org.intermine.model.InterMineObject.id
protected java.lang.Integer id;
public java.lang.Integer getId() { return id; }
public void setId(final java.lang.Integer id) { this.id = id; }
@Override public boolean equals(Object o) { return (o instanceof SequenceVariant && id != null) ? id.equals(((SequenceVariant)o).getId()) : this == o; }
@Override public int hashCode() { return (id != null) ? id.hashCode() : super.hashCode(); }
@Override public String toString() { return "SequenceVariant [id=" + id + "]"; }
public Object getFieldValue(final String fieldName) throws IllegalAccessException {
if ("genes".equals(fieldName)) {
return genes;
}
if ("id".equals(fieldName)) {
return id;
}
if (!org.intermine.model.bio.SequenceVariant.class.equals(getClass())) {
return TypeUtil.getFieldValue(this, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
public Object getFieldProxy(final String fieldName) throws IllegalAccessException {
if ("genes".equals(fieldName)) {
return genes;
}
if ("id".equals(fieldName)) {
return id;
}
if (!org.intermine.model.bio.SequenceVariant.class.equals(getClass())) {
return TypeUtil.getFieldProxy(this, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
public void setFieldValue(final String fieldName, final Object value) {
if ("genes".equals(fieldName)) {
genes = (java.util.Set) value;
} else if ("id".equals(fieldName)) {
id = (java.lang.Integer) value;
} else {
if (!org.intermine.model.bio.SequenceVariant.class.equals(getClass())) {
DynamicUtil.setFieldValue(this, fieldName, value);
return;
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
}
public Class getFieldType(final String fieldName) {
if ("genes".equals(fieldName)) {
return java.util.Set.class;
}
if ("id".equals(fieldName)) {
return java.lang.Integer.class;
}
if (!org.intermine.model.bio.SequenceVariant.class.equals(getClass())) {
return TypeUtil.getFieldType(org.intermine.model.bio.SequenceVariant.class, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
public StringConstructor getoBJECT() {
if (!org.intermine.model.bio.SequenceVariantShadow.class.equals(getClass())) {
return NotXmlRenderer.render(this);
}
StringConstructor sb = new StringConstructor();
sb.append("$_^org.intermine.model.bio.SequenceVariant");
if (id != null) {
sb.append("$_^aid$_^").append(id);
}
return sb;
}
public void setoBJECT(String notXml, ObjectStore os) {
setoBJECT(NotXmlParser.SPLITTER.split(notXml), os);
}
public void setoBJECT(final String[] notXml, final ObjectStore os) {
if (!org.intermine.model.bio.SequenceVariantShadow.class.equals(getClass())) {
throw new IllegalStateException("Class " + getClass().getName() + " does not match code (org.intermine.model.bio.SequenceVariant)");
}
for (int i = 2; i < notXml.length;) {
int startI = i;
if ((i < notXml.length) && "aid".equals(notXml[i])) {
i++;
id = Integer.valueOf(notXml[i]);
i++;
}
if (startI == i) {
throw new IllegalArgumentException("Unknown field " + notXml[i]);
}
}
genes = new ProxyCollection(os, this, "genes", org.intermine.model.bio.Gene.class);
}
public void addCollectionElement(final String fieldName, final org.intermine.model.InterMineObject element) {
if ("genes".equals(fieldName)) {
genes.add((org.intermine.model.bio.Gene) element);
} else {
if (!org.intermine.model.bio.SequenceVariant.class.equals(getClass())) {
TypeUtil.addCollectionElement(this, fieldName, element);
return;
}
throw new IllegalArgumentException("Unknown collection " + fieldName);
}
}
public Class getElementType(final String fieldName) {
if ("genes".equals(fieldName)) {
return org.intermine.model.bio.Gene.class;
}
if (!org.intermine.model.bio.SequenceVariant.class.equals(getClass())) {
return TypeUtil.getElementType(org.intermine.model.bio.SequenceVariant.class, fieldName);
}
throw new IllegalArgumentException("Unknown field " + fieldName);
}
}