org.molgenis.oneclickimporter.service.CsvService Maven / Gradle / Ivy

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Plugin module for importing data with automatic metadata determination (not part of the importer framework).

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package org.molgenis.oneclickimporter.service;

import java.io.File;
import java.io.IOException;
import java.util.List;

public interface CsvService {

  Character CSV_SEPARATOR = ',';

  /**
   * Creates a List with String[] containing the lines of a CSV file Including the header
   *
   * Uses the {@link au.com.bytecode.opencsv.CSVReader} which is also used in the {@link
   * org.molgenis.data.csv.CsvIterator}
   *
   * @param file can be a zip or a regular file
   * @throws IOException if something goes wrong reading the file
   * @throws org.molgenis.data.MolgenisDataException if validation of the file content fails
   */
  List buildLinesFromFile(File file) throws IOException;
}