org.sbml.jsbml.ext.spatial.CSGPseudoPrimitive Maven / Gradle / Ivy
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/*
* ----------------------------------------------------------------------------
* This file is part of JSBML. Please visit
* for the latest version of JSBML and more information about SBML.
*
* Copyright (C) 2009-2022 jointly by the following organizations:
* 1. The University of Tuebingen, Germany
* 2. EMBL European Bioinformatics Institute (EBML-EBI), Hinxton, UK
* 3. The California Institute of Technology, Pasadena, CA, USA
* 4. The University of California, San Diego, La Jolla, CA, USA
* 5. The Babraham Institute, Cambridge, UK
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online as .
* ----------------------------------------------------------------------------
*/
package org.sbml.jsbml.ext.spatial;
import java.text.MessageFormat;
import java.util.Map;
import org.apache.log4j.Logger;
import org.sbml.jsbml.PropertyUndefinedError;
/**
* @author Alex Thomas
* @since 1.0
*/
public class CSGPseudoPrimitive extends CSGNode{
/**
* A {@link Logger} for this class.
*/
private static final transient Logger logger = Logger.getLogger(CSGPseudoPrimitive.class);
/**
*
*/
private static final long serialVersionUID = 303742063326104808L;
/**
*
*/
private String csgObjectRef;
/**
*
*/
public CSGPseudoPrimitive() {
super();
}
/**
* @param csgp
*/
public CSGPseudoPrimitive(CSGPseudoPrimitive csgp) {
super(csgp);
if (csgp.isSetCsgObjectRef()) {
setCsgObjectRef(csgp.getCsgObjectRef());
}
}
/**
* @param level
* @param version
*/
public CSGPseudoPrimitive(int level, int version) {
super(level, version);
}
/**
*
* @param id
* @param level
* @param version
*/
public CSGPseudoPrimitive(String id, int level, int version) {
super(id, level, version);
}
@Override
public CSGPseudoPrimitive clone() {
return new CSGPseudoPrimitive(this);
}
@Override
public boolean equals(Object object) {
boolean equal = super.equals(object);
if (equal) {
CSGPseudoPrimitive csgp = (CSGPseudoPrimitive) object;
equal &= csgp.isSetCsgObjectRef() == isSetCsgObjectRef();
if (equal && isSetCsgObjectRef()) {
equal &= csgp.getCsgObjectRef().equals(getCsgObjectRef());
}
}
return equal;
}
/**
* Returns the value of csgObjectRef
*
* @return the value of csgObjectRef
*/
public String getCsgObjectRef() {
if (isSetCsgObjectRef()) {
return csgObjectRef;
}
// This is necessary if we cannot return null here.
throw new PropertyUndefinedError(SpatialConstants.primitiveType, this);
}
/**
* Returns whether csgObjectRef is set
*
* @return whether csgObjectRef is set
*/
public boolean isSetCsgObjectRef() {
return csgObjectRef != null;
}
/**
* Sets the value of csgObjectRef
* @param csgObjectRef
*/
public void setCsgObjectRef(String csgObjectRef) {
String oldCsgObjectRef = this.csgObjectRef;
this.csgObjectRef = csgObjectRef;
firePropertyChange(SpatialConstants.primitiveType, oldCsgObjectRef, this.csgObjectRef);
}
/**
* Unsets the variable csgObjectRef
*
* @return {@code true}, if csgObjectRef was set before,
* otherwise {@code false}
*/
public boolean unsetCsgObjectRef() {
if (isSetCsgObjectRef()) {
String oldCsgObjectRef = csgObjectRef;
csgObjectRef = null;
firePropertyChange(SpatialConstants.primitiveType, oldCsgObjectRef, csgObjectRef);
return true;
}
return false;
}
@Override
public int hashCode() {
final int prime = 1741;
int hashCode = super.hashCode();
if (isSetCsgObjectRef()) {
hashCode += prime * getCsgObjectRef().hashCode();
}
return hashCode;
}
@Override
public Map writeXMLAttributes() {
Map attributes = super.writeXMLAttributes();
if (isSetCsgObjectRef()) {
attributes.remove("csgObjectRef");
attributes.put(SpatialConstants.shortLabel + ":csgObjectRef", getCsgObjectRef());
}
return attributes;
}
@Override
public boolean readAttribute(String attributeName, String prefix, String value) {
boolean isAttributeRead = (super.readAttribute(attributeName, prefix, value))
&& (SpatialConstants.shortLabel == prefix);
if (!isAttributeRead) {
isAttributeRead = true;
if (attributeName.equals(SpatialConstants.primitiveType)) {
try {
setCsgObjectRef(value);
} catch (Exception e) {
logger.warn(MessageFormat.format(
SpatialConstants.bundle.getString("COULD_NOT_READ_ATTRIBUTE"), value, SpatialConstants.primitiveType, getElementName()));
}
}
else {
isAttributeRead = false;
}
}
return isAttributeRead;
}
/* (non-Javadoc)
* @see org.sbml.jsbml.AbstractSBase#getElementName()
*/
@Override
public String getElementName() {
return SpatialConstants.csgPseudoPrimitive;
}
}