s.SnpEff.4.3.1.source-code.snpEff_genes.ftl Maven / Gradle / Ivy

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Variant annotation and effect prediction package.

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# The following table is formatted as tab separated values. <#assign geneRegionTab=changeStats.geneCountByRegionTable>	<#assign geneEffTab=changeStats.geneCountByEffectTable>	<#assign geneImpTab=changeStats.geneCountByImpactTable>	<#assign keyList=geneRegionTab.keyList>	<#assign regions=geneRegionTab.typeList> <#assign effects=geneEffTab.typeList>  <#assign impacts=geneImpTab.typeList>
#GeneName	GeneId	TranscriptId	BioType<#list impacts as imp>	variants_impact_${imp}<#list effects as eff>	variants_effect_${eff}
<#list keyList as key>${key}	${geneRegionTab.getBioType(key)}<#list impacts as imp>	${geneImpTab.getCounter(imp).get(key)}<#list effects as eff>	${geneEffTab.getCounter(eff).get(key)}