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s.SnpEff.4.3.1.source-code.translocations_report.ftl Maven / Gradle / Ivy

    
    
    
    

    
    

    
    
    






 
 SnpEff: Translocation report 
 


Summary


	
 
		
 SnpEff version
		
 
${version}
 
	
	
 
		
 Date & Time 
		
 ${date} 
	
	
 
		
 Command line arguments 
		
 
${args}
 
	
	

		
 Number of translocations 
		
 ${countTranslocations} 
	

Index


<#list translocations as transloc>
	

	
 
		
 Effect 
		
 Genes 
		
 Transcripts 
		
 Coordiantes 
	
 
		
  ${transloc.variantEffect} 
		
 ${transloc.geneName1} - ${transloc.geneName2}  
		
 ${transloc.trId1} - ${transloc.trId2} 
		
 ${transloc.chr1}:${transloc.pos1OneBased} - ${transloc.chr2}:${transloc.pos2OneBased} 
	




Details

<#list translocations as transloc>
	
${transloc.index}
	

		
 
			
 
			
 BND Endpoint 1 
			
 BND Endpoint 2 
		
		
 
			
 Genes 
			
 ${transloc.geneName1} 
			
 ${transloc.geneName2} 
 
		
		
 
			
 Transcript IDs 
			
 ${transloc.trId1} 
			
 ${transloc.trId2} 
 
		
		
 
			
 Genomic coordinates 
			
 ${transloc.chr1} : ${transloc.pos1OneBased} 
			
 ${transloc.chr2} : ${transloc.pos2OneBased} 
 
		
		

			
 Putative effect 
 
			
 ${transloc.variantEffect} 
		
		

			
 Putative impact 
 
			
 ${transloc.impact} 
		
		

			
 HGVS.p 
 
			
 ${transloc.hgvsP} 
		
		

			
 HGVS.c 
 
			
 ${transloc.hgvsC} 
		
	

	 Vcf annotation entry (raw data) 
	
 ${transloc.vcfEffect} 

	${transloc.svgPlot}