arispe.slib-tools-ontofocus.0.9.1.source-code.ontofocus-constants.properties Maven / Gradle / Ivy

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ontofocus.version        = ${ontofocus.version}
ontofocus.name           = OntoFocus
ontofocus.description    = OntoFocus can be used to reduce any taxonomy considering a set of nodes of\ninterest. It can be useful to extract relevant information from large knowledge\nrepresentations which rely on a graph structure\, e.g.\, lightweight ontologies\,\nsemantic networks\, RDF graphs (taxonomic part).\n\nConsidering a query file which specifies a set of reductions to perform\,\nOntoFocus generates a DOT file for each reduction. The DOT file can next be used\nto create a (pdf\, png\, jpeg\, etc.) graphical representation of the reduction\nusing the tool dot (refer to GraphViz: http://www.graphviz.org).\n\nCredits: LGI2P Laboratory Ecole des Mines d'Al\u00e8s (France).\nLicense: CeCiLL (GPL-compatible)\nImplementation: Harispe S\u00e9bastien \n\nPlease cite:\nRanwez\, V.\, Ranwez\, S. & Janaqi\, S.\, (2012).\nSub-ontology extraction using hyponym and hypernym closure on is-a directed\nacyclic graphs.\nIEEE Transactions on Knowledge and Data Engineering\, 24(12)\, 2288\u20132300.\n\nExamples:\nQuery file (qfile.tsv):\n\nq1	GO:0032436\,GO:0017109\,GO:0006805\,GO:0009410\nq2	GO:0032436\,GO:0017109\n...\n\nExecution:\njava -jar ontoFocus.jar -onto gene_ontology_ext.obo -queries qfile.tsv -prefixes GO=http://go/ -addR -tr\n\nTwo files are generated q1.dot and q2.dot\, they contain the graph reductions (DOT format).\n\nTo Generate a pdf file with a graphical representation of the reduction (with dot installed)\ndot -Tpdf q1.dot -o q1.pdf\n\nCommand-line arguments are presented below\, have fun.