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ostosys.1.0.0.source-code.defaultConfiguration.xml Maven / Gradle / Ivy

<?xml version="1.0" encoding="UTF-8"?>

<!-- no Doctype, XML Schema used instead -->
<databaseConnectorConfiguration
	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:noNamespaceSchemaLocation="configuration.xsd">
	<DBSchemaInformation>
		<activePostgresSchema>test</activePostgresSchema>
		<activeTableSchema></activeTableSchema>
		<activeDataPostgresSchema>_data</activeDataPostgresSchema>
		<dataTable>_data</dataTable>
		<tableSchemas>
			<tableSchema name="medline_2017"
				forEach="/PubmedArticleSet/PubmedArticle/MedlineCitation">
				<field name="pmid" type="text" xpath="PMID" primaryKey="true"
					retrieve="true"></field>
				<field name="xml" type="bytea" xpath="." returnXMLFragment="true"
					retrieve="true" gzip="true"></field>
			</tableSchema>
			<tableSchema name="medline_2016" forEach="/MedlineCitationSet/MedlineCitation">
				<field name="pmid" type="text" xpath="PMID" primaryKey="true"
					retrieve="true"></field>
				<field name="xml" type="bytea" xpath="." returnXMLFragment="true"
					retrieve="true" gzip="true"></field>
			</tableSchema>
			<tableSchema name="pubmed_gzip"
				forEach="/PubmedArticleSet/PubmedArticle/MedlineCitation">
				<field name="pmid" type="text" xpath="PMID" primaryKey="true"
					retrieve="true"></field>
				<field name="xml" type="bytea" xpath="." returnXMLFragment="true"
					retrieve="true" gzip="true"></field>
			</tableSchema>
			<tableSchema name="xmi_text" forEach=".">
				<field name="pmid" type="text" xpath="PMID" primaryKey="true"
					retrieve="true"></field>
				<field name="xmi" type="text" xpath="." returnXMLFragment="true"
					retrieve="true"></field>
				<field name="max_xmi_id" type="integer" xpath="." retrieve="true"></field>
				<field name="sofa_mapping" type="text" xpath="." retrieve="true"></field>
			</tableSchema>
			<tableSchema name="xmi_annotation" forEach=".">
				<field name="pmid" type="text" xpath="PMID" primaryKey="true"
					retrieve="false"></field>
				<field name="xmi" type="text" xpath="." returnXMLFragment="true"
					retrieve="true"></field>
			</tableSchema>
			<tableSchema name="xmi_text_gzip" forEach=".">
				<field name="pmid" type="text" xpath="PMID" primaryKey="true"
					retrieve="true"></field>
				<field name="xmi" type="bytea" xpath="." returnXMLFragment="true"
					retrieve="true" gzip="true"></field>
				<field name="max_xmi_id" type="integer" xpath="." retrieve="true"></field>
				<field name="sofa_mapping" type="text" xpath="." retrieve="true"></field>
			</tableSchema>
			<!-- This schema is supposed to only get te max_xmi_id field value of 
				the xmi_text_gzip schema. -->
			<tableSchema name="max_id_addition" forEach=".">
				<field name="pmid" type="text" xpath="PMID" primaryKey="true"
					retrieve="false"></field>
				<field name="xmi" type="bytea" xpath="." returnXMLFragment="true"
					retrieve="false" gzip="true"></field>
				<field name="max_xmi_id" type="integer" xpath="." retrieve="true"></field>
			</tableSchema>
			<tableSchema name="xmi_annotation_gzip" forEach=".">
				<field name="pmid" type="text" xpath="PMID" primaryKey="true"
					retrieve="false"></field>
				<field name="xmi" type="bytea" xpath="." returnXMLFragment="true"
					retrieve="true" gzip="true"></field>
			</tableSchema>
			<tableSchema name="dbc_junit_gzip" forEach="/MedlineCitationSet/MedlineCitation">
				<field name="pmid" type="text" xpath="PMID" primaryKey="true"
					retrieve="true"></field>
				<field name="xml" type="bytea" xpath="." returnXMLFragment="true"
					retrieve="true" gzip="true"></field>
			</tableSchema>
		</tableSchemas>
	</DBSchemaInformation>
	<DBConnectionInformation>
		<activeDBConnection></activeDBConnection>
		<maxActiveDBConnections>1</maxActiveDBConnections>
		<DBConnections>
			<DBConnection url="" name="" />
		</DBConnections>
	</DBConnectionInformation>
</databaseConnectorConfiguration>