ostosys.1.2.1.source-code.defaultConfiguration.xml Maven / Gradle / Ivy
<?xml version="1.0" encoding="UTF-8"?>
<!-- no Doctype, XML Schema used instead -->
<databaseConnectorConfiguration
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns="http://julielab.de"
xsi:schemaLocation="http://julielab.de https://raw.githubusercontent.com/JULIELab/costosys/v1.0.1/src/main/resources/configuration.xsd">
<DBSchemaInformation>
<activePostgresSchema>public</activePostgresSchema>
<activeTableSchema/>
<activeDataPostgresSchema>_data</activeDataPostgresSchema>
<dataTable>_data</dataTable>
<tableSchemas>
<tableSchema name="medline_2017"
forEach="/PubmedArticleSet/PubmedArticle/MedlineCitation">
<field name="pmid" type="text" xpath="PMID" primaryKey="true"
retrieve="true"/>
<field name="xml" type="bytea" xpath="." returnXMLFragment="true"
retrieve="true" gzip="true"/>
</tableSchema>
<tableSchema name="medline_2016" forEach="/MedlineCitationSet/MedlineCitation">
<field name="pmid" type="text" xpath="PMID" primaryKey="true"
retrieve="true"/>
<field name="xml" type="bytea" xpath="." returnXMLFragment="true"
retrieve="true" gzip="true"/>
</tableSchema>
<tableSchema name="pubmed_gzip"
forEach="/PubmedArticleSet/PubmedArticle/MedlineCitation">
<field name="pmid" type="text" xpath="PMID" primaryKey="true"
retrieve="true"/>
<field name="xml" type="bytea" xpath="." returnXMLFragment="true"
retrieve="true" gzip="true"/>
</tableSchema>
<tableSchema name="xmi_complete_cas" forEach=".">
<field name="docid" type="text" primaryKey="true" retrieve="true"/>
<field name="xmi" type="xml" retrieve="true"/>
</tableSchema>
<tableSchema name="xmi_complete_cas_gzip" forEach=".">
<field name="docid" type="text" primaryKey="true" retrieve="true"/>
<field name="xmi" type="bytea" retrieve="true" gzip="true"/>
</tableSchema>
<tableSchema name="xmi_text" forEach=".">
<field name="docid" type="text" primaryKey="true" retrieve="true"/>
<field name="xmi" type="xml" retrieve="true"/>
<field name="max_xmi_id" type="integer" xpath="." retrieve="true"/>
<field name="sofa_mapping" type="text" xpath="." retrieve="true"/>
</tableSchema>
<tableSchema name="xmi_annotation" forEach=".">
<field name="docid" type="xml" primaryKey="true" retrieve="false"/>
<field name="xmi" type="xml" retrieve="true"/>
</tableSchema>
<tableSchema name="xmi_text_gzip" forEach=".">
<field name="docid" type="text" primaryKey="true" retrieve="true"/>
<field name="xmi" type="bytea" retrieve="true" gzip="true"/>
<field name="max_xmi_id" type="integer" xpath="." retrieve="true"/>
<field name="sofa_mapping" type="text" xpath="." retrieve="true"/>
</tableSchema>
<!-- This schema is supposed to only get the max_xmi_id field value of
the xmi_text_gzip schema. -->
<tableSchema name="max_id_addition" forEach=".">
<field name="docid" type="text" primaryKey="true" retrieve="false"/>
<field name="xmi" type="bytea" retrieve="false" gzip="true"/>
<field name="max_xmi_id" type="integer" retrieve="true"/>
</tableSchema>
<tableSchema name="xmi_annotation_gzip" forEach=".">
<field name="docid" type="text" primaryKey="true" retrieve="false"/>
<field name="xmi" type="bytea" retrieve="true" gzip="true"/>
</tableSchema>
<tableSchema name="dbc_junit_gzip" forEach="/MedlineCitationSet/MedlineCitation">
<field name="pmid" type="text" xpath="PMID" primaryKey="true"
retrieve="true"/>
<field name="xml" type="bytea" xpath="." returnXMLFragment="true"
retrieve="true" gzip="true"/>
</tableSchema>
</tableSchemas>
</DBSchemaInformation>
<DBConnectionInformation>
<activeDBConnection></activeDBConnection>
<maxActiveDBConnections>1</maxActiveDBConnections>
<DBConnections>
<DBConnection url="" name="" />
</DBConnections>
</DBConnectionInformation>
</databaseConnectorConfiguration>