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/** -----------------------------------------------------------------------------------------------------------------------
* @projectDescription View controller for the query graph window (which is a GUI-only component of the CRC module).
* @inherits i2b2.CRC.view
* @namespace i2b2.CRC.view.graphs
* @author Shawn Murphy MD PhD, Hannah Murphy
* @version 1.7
* @description This set of functions uses D3 and its derivative C3 to graph the text that results in the query-status-window
* of the i2b2 web client.
* The main function is "createGraphs".
* Because it makes extensive use of Vector Graphic in the D3 library it will only work in Microsoft Internet
* Explorer 9 and above. It assumes the STATUS window is a specific height which is 146px. In theory the
* Width can vary, but right not it is set to 535px in many places.
* It draws the graphs in a div (which should be the dimensions above), using a string which is essentially
* screen-scraped from the text what is placed in the query_status box of the web client. To distinguish the
* normal i2b2 vs. SHRINE text, a boolean flag is used. A regular i2b2 result (bIsMultiSite = false)
* or a SHRINE result (bIsMultiSite = true).
* Internally, everything works off an array the is produced from the test that is a six element array of
* **** 0 "query name", 1 "title", 2 "site", 3 "element name", 4 quantity, 5 "sentence" ****
* for example, one element would be:
* **** ["Circulatory sys@20:21:19", "Age patient breakdown", "MGH" "0-9 years old", 0, "0-9 years old: 0"] ****
* It also uses some jQuery, but only for the scroll bar function with *** jQuery Stuff ***
* in the comments.
* There are four web client javascript files in the CRC folder that have references to functions in this
* javascript file, and the default.htm folder in the main web client folder, they are:
* CRC_view_Status, CRC_ctlr_QryStatus, CRC_ctlr_QryTools, and cell_config_data
** -----------------------------------------------------------------------------------------------------------------------*/
console.group('Load & Execute component file: CRC > view > Graphs');
console.time('execute time');
//i2b2.PM.model.isObfuscated = true; // for testing
// Constants
var msSpecialBreakdownSite = ""; // this constant designates a site from which the breakdown arrays will always be obtained
var msStringDefineingNumberOfPatients = "number of patients"; // this constant is what appears in the breakdown text
// which is the number of patients and is lower cased and trimmed on both sides for comparison
// create and save the screen objects and more constants
i2b2.CRC.view.graphs = new i2b2Base_cellViewController(i2b2.CRC, 'graphs');
i2b2.CRC.view.graphs.visible = false;
i2b2.CRC.view.graphs.iObfuscatedFloorNumber = i2b2.UI.cfg.obfuscatedDisplayNumber; // this is the amount reported that the numbers are obfuscated by
i2b2.CRC.view.graphs.sObfuscatedText = "<"+i2b2.UI.cfg.obfuscatedDisplayNumber.toString(); // this is the text that is replaced for a small number in obfuscated mode
// so that it can be cleaned up before the next display
i2b2.CRC.view.graphs.sObfuscatedEnding = "±"+i2b2.UI.cfg.obfuscatedDisplayNumber.toString(); //this is the text that is added to all numbers in obfuscated mode
i2b2.CRC.view.graphs.bIsSHRINE = false; // this changes the way the graphs are made if the file is being run in SHRINE mode
// NOTE THAT THIS IS DEMO ONLY IN THIS VERSION - IT DOES NOT REALLY WORK
i2b2.CRC.view.graphs.asTitleOfShrineGroup = ["patient age count breakdown", "patient gender count breakdown", "patient race count breakdown",
"patient vital status count breakdown"];
// These functions manage the graph divs, but DECISIONS are made in the CRC_view_Status code
i2b2.CRC.view.graphs.show = function() {
i2b2.CRC.view.graphs.visible = true;
$('crcGraphsBox').show();
}
i2b2.CRC.view.graphs.hide = function() {
i2b2.CRC.view.graphs.visible = false;
$('crcGraphsBox').hide();
}
i2b2.CRC.view.graphs.showDisplay = function() {
var targs = $('infoQueryStatusChart').parentNode.parentNode.select('DIV.tabBox.active');
// remove all active tabs
targs.each(function(el) { el.removeClassName('active'); });
// set us as active
$('infoQueryStatusChart').parentNode.parentNode.select('DIV.tabBox.tabQueryGraphs')[0].addClassName('active');
$('infoQueryStatusChart').show();
}
i2b2.CRC.view.graphs.hideDisplay = function() {
$('infoQueryStatusChart').hide();
}
// ================================================================================================== //
/*********************************************************************************
FUNCTION createGraphs
Takes a Div, the text from the query status view, and a multisite flag and populates the Div
**********************************************************************************/
i2b2.CRC.view.graphs.createGraphs = function(sDivName, sInputString, bIsMultiSite) {
try {
if (sDivName === undefined || sDivName === null || sDivName === "") throw ("ERROR 201 - sDivName in function createGraphs is null");
//i2b2.CRC.view.graphs.sNameOfPreviousDiv = sDivName;
i2b2.CRC.view.graphs.clearGraphs(sDivName);
if (!i2b2.CRC.view.graphs.bisGTIE8) {
i2b2.CRC.view.graphs.aDivForIE8(sDivName);
return;
}
if (bIsMultiSite) sInputString = i2b2.CRC.view.graphs.returnTestString(true);
if (sInputString === undefined || sInputString === null || sInputString === "") throw ("ERROR 202 - sInputString in function createGraphs is null");
var asBreakdownArray = [[]];
var iBreakdown = 0;
// make the input array
var asInputArray = parseInputIntoArray(sInputString, bIsMultiSite);
// Pull out unique breakdown types
var asBreakdownTypes = [];
var iBreakdown = 0;
for (var i = 0; i < asInputArray.length; i++) {
asBreakdownTypes[iBreakdown] = asInputArray[i][1];
iBreakdown++;
}
var asUniqueBreakdownTypes = [];
for (var i=0; i < asBreakdownTypes.length; i++) {
if (asUniqueBreakdownTypes.indexOf(asBreakdownTypes[i]) === -1 && asBreakdownTypes[i] !== '')
asUniqueBreakdownTypes.push(asBreakdownTypes[i]);
}
if (asUniqueBreakdownTypes.length === 0) throw ("ERROR 203 in createGraphs, there are no breakdown types in *unique* array");
//console.log(asUniqueBreakdownTypes);
// rearrange unique array so that patient number is on the top
for (var i = 0; i < asUniqueBreakdownTypes.length; i++) {
if (asUniqueBreakdownTypes[i].toLowerCase().trim() == msStringDefineingNumberOfPatients.toLowerCase().trim()) {
var sTempVariable = asUniqueBreakdownTypes[0];
asUniqueBreakdownTypes[0] = asUniqueBreakdownTypes[i];
asUniqueBreakdownTypes[i] = sTempVariable;
break;
}
}
//Make Divs in the original div for the charts
oParentDiv = document.getElementById(sDivName);
for (var i=0; i100 && y<200) {
//do something else
jQuery(this).scrollTop(148);
} else {
jQuery(this).scrollTop(296);
}
}); */
}
catch(err) {
console.error(err);
}
} // END of function createGraphs
/*****************************************************************************************************
@Function parseInputIntoArray(sInputString, isMultiSite)
@Input (String *text from query status*, Boolean false = single site, true = multiple site)
@Output Create a two dimensional array out of these strings called asInputFragments
Each array element is a six element array of 0 "query name", 1 "title", 2 "site", 3 "element name", 4 quantity, 5 "sentence"
for example, one element would be ["Circulatory sys@20:21:19", "Age patient breakdown", "MGH" "0-9 years old", 0, "0-9 years old: 0"]
*****************************************************************************************************/
parseInputIntoArray = function(sInputString, isMultiSite) {
var sCheckForNothing = "something"; // this gets checked to be a zero length string
try {
var old_demo = false;
if (sInputString === undefined || sInputString === null || sInputString === "") throw ("ERROR - sInputString in function parseInputIntoArray is empty");
var asInputFragments = [[]];
if (!isMultiSite) {
var asTempArray = [];
var sLatestTitle, sLatestQueryName, sLatestElementName, iLatestQuantity, sLatestSite;
// process input one line at a time to look for the start of a block.
// you know it because it has two \"'s
// begin your parsing by separating into an array of sentences that were delimited with \n
var asInputSentences = sInputString.split("\n");
var iFragmentArrayCounter = 0;
for(var i = 0; i < asInputSentences.length; i++) {
if (asInputSentences[i].indexOf('for "') > 0) {
asTempArray = asInputSentences[i].split('for "');
sLatestTitle = asTempArray[0];
sLatestQueryName = asTempArray[1];
sLatestSite = ".";
//document.write(" Element " + i + " = " + asInputSentences[i]);
} else if (asInputSentences[i].indexOf(":") > 0) {
asTemp2Array = asInputSentences[i].split(":");
sLatestElementName = asTemp2Array[0];
iLatestQuantity = asTemp2Array[1];
//document.write(" Element " + i + " = " + asInputSentences[i]);
asInputFragments[iFragmentArrayCounter] = new Array (6);
asInputFragments[iFragmentArrayCounter][0] = sLatestQueryName;
asInputFragments[iFragmentArrayCounter][1] = sLatestTitle;
asInputFragments[iFragmentArrayCounter][2] = sLatestSite;
asInputFragments[iFragmentArrayCounter][3] = sLatestElementName;
asInputFragments[iFragmentArrayCounter][4] = i2b2.CRC.view.graphs.sValueOfi2b2Text(iLatestQuantity);
asInputFragments[iFragmentArrayCounter][5] = asInputSentences[i];
for(var j = 0; j < 6; j++) {
//console.log("Element " + i + "@" + j + " ===== " + asInputFragments[iFragmentArrayCounter][j]);
}
iFragmentArrayCounter++;
} else {
//document.write(" ERROR? " + i + " = " + asInputSentences[i]);
}
//document.write(" Element " + i + " = " + sLatestTitle + " " + sLatestQueryName + " " + sLatestElementName + " " + iLatestQuantity);
}
}
else if (old_demo == true) { // parsing for old_demo SHRINE strings
var asTempArray = [];
var asTemp2Array = [];
var sLatestTitle, sLatestQueryName, sLatestElementName, iLatestQuantity, sLatestSite;
// process input one line at a time to look for the start of a block.
// you know it because it has two \"'s
// begin your parsing by separating into an array of sentences that were delimited with \n
var asInputSentences = sInputString.split("\n");
var iFragmentArrayCounter = 0;
for (var i = 0; i < asInputSentences.length; i++) {
if (asInputSentences[i].indexOf('for "') > 0) {
asTempArray = asInputSentences[i].split('for "');
sLatestTitle = asTempArray[0];
if (asTempArray[1].indexOf("=") > 0) {
asTemp2Array = asTempArray[1].split("=");
sLatestQueryName = asTemp2Array[0];
sLatestSite = asTemp2Array[1];
}
else {
sLatestQueryName = asTempArray[1];
sLatestSite = "xxx";
}
//document.write(" Element " + i + " = " + asInputSentences[i]);
} else if (asInputSentences[i].indexOf(":") > 0) {
asTemp2Array = asInputSentences[i].split(":");
sLatestElementName = asTemp2Array[0];
iLatestQuantity = asTemp2Array[1];
//document.write(" Element " + i + " = " + asInputSentences[i]);
asInputFragments[iFragmentArrayCounter] = new Array (6);
asInputFragments[iFragmentArrayCounter][0] = sLatestQueryName;
asInputFragments[iFragmentArrayCounter][1] = sLatestTitle;
asInputFragments[iFragmentArrayCounter][2] = sLatestSite;
asInputFragments[iFragmentArrayCounter][3] = sLatestElementName;
asInputFragments[iFragmentArrayCounter][4] = iLatestQuantity;
asInputFragments[iFragmentArrayCounter][5] = asInputSentences[i];
for(var j = 0; j < 6; j++) {
//console.log("Element " + i + "@" + j + " ===== " + asInputFragments[iFragmentArrayCounter][j]);
}
iFragmentArrayCounter++;
} else {
//document.write(" ERROR? " + i + " = " + asInputSentences[i]);
}
//document.write(" Element " + i + " = " + sLatestTitle + " " + sLatestQueryName + " " + sLatestElementName + " " + iLatestQuantity);
}
}
else { // parsing for SHRINE strings
var asTempArray = [];
var asTemp2Array = [];
var sLatestTitle, sLatestQueryName, sLatestElementName, iLatestQuantity, sLatestSite;
// process input one line at a time to look for the start of a block.
// + 'Hospital 1 \"Diseases of the@19:12:10\"\n' + \\ Pattern is in these two lines
// + 'Patient Count: - 67 +-3 patients\n' + \\ to define new hospital
// + '\n' +
// + 'Patient Age Count Breakdown:\n' +
// + '0-9 years old: - 10 patients or fewer\n' +
// + '10-17 years old: - 10 patients or fewer\n' +
// you know it because it has two \"'s
// begin your parsing by separating into an array of sentences that were delimited with \n
var asInputSentences = sInputString.split("\n");
var iFragmentArrayCounter = 0;
for(var i = 0; i < asInputSentences.length; i++) {
if (asInputSentences[i].indexOf('\"') > 1) { // There are two or more quotations means it is
asTempArray = asInputSentences[i].split('\"'); // the hospital and the name of the query
sLatestSite = asTempArray[0];
if (asTempArray[1].indexOf('\"') > 0) {
asTemp2Array = asTempArray[1].split('\"');
sLatestQueryName = asTemp2Array[0];
}
else {
sLatestQueryName = asTempArray[1];
}
//document.write(" Element " + i + " = " + asInputSentences[i]);
document.write(" Element " + i + " Site = " + sLatestSite + " Name = " + sLatestQueryName);
} else if (asInputSentences[i].indexOf("Patient Count:") > -1) { // Finding the "patient count" line is
asTemp2Array = asInputSentences[i].split(":"); // unique in the SHRINE
sLatestTitle = 'Patient Count';
sLatestElementName = 'Patient Count';
iLatestQuantity = asTemp2Array[1];
//document.write(" Element " + i + " = " + asInputSentences[i]);
asInputFragments[iFragmentArrayCounter] = new Array (6);
asInputFragments[iFragmentArrayCounter][0] = sLatestQueryName;
asInputFragments[iFragmentArrayCounter][1] = sLatestTitle;
asInputFragments[iFragmentArrayCounter][2] = sLatestSite;
asInputFragments[iFragmentArrayCounter][3] = sLatestElementName;
asInputFragments[iFragmentArrayCounter][4] = iLatestQuantity;
asInputFragments[iFragmentArrayCounter][5] = asInputSentences[i];
for(var j = 0; j < 6; j++) {
document.write(" Element " + i + "@" + j + " ===== " + asInputFragments[iFragmentArrayCounter][j] + "=====");
}
iFragmentArrayCounter++; // don't want to advance array counter
/*} else if (i2b2.CRC.view.graphs.asTitleOfShrineGroup.indexOf(asInputSentences[i].toLowerCase().trim()) > -1) {
asTemp2Array = asInputSentences[i].split(":"); // Finding a type of breakdown
sLatestTitle = asTemp2Array[0].trim();
sCheckForNothing = asTemp2Array[1];
if (sCheckForNothing.length() != 0) {
//console.log("Supposed to be nothing, but is ->" + sCheckForNothing + "<-")
} else {
document.write(" Got this for title of breakdown -=" + sLatestTitle + "=-")
}
iFragmentArrayCounter++;*/
} else if (asInputSentences[i].indexOf(":") > -1) { // parsing the values
asTemp2Array = asInputSentences[i].split(":");
sLatestElementName = asTemp2Array[0];
iLatestQuantity = asTemp2Array[1];
if (i2b2.CRC.view.graphs.asTitleOfShrineGroup.indexOf(sLatestElementName.toLowerCase().trim()) > -1) {
sLatestTitle = sLatestElementName.trim();
sCheckForNothing = iLatestQuantity;
/*if (sCheckForNothing.length() != 0) {
alert("a " + sLatestElementName.toLowerCase().trim());
//console.log("Supposed to be nothing, but is ->" + sCheckForNothing + "<-")
} else {
document.write(" Got this for title of breakdown -=" + sLatestTitle + "=-");
alert("b " + sLatestElementName.toLowerCase().trim());
}*/
}
//document.write(" Element " + i + " = " + asInputSentences[i]);
asInputFragments[iFragmentArrayCounter] = new Array (6);
asInputFragments[iFragmentArrayCounter][0] = sLatestQueryName;
asInputFragments[iFragmentArrayCounter][1] = sLatestTitle;
asInputFragments[iFragmentArrayCounter][2] = sLatestSite;
asInputFragments[iFragmentArrayCounter][3] = sLatestElementName;
asInputFragments[iFragmentArrayCounter][4] = iLatestQuantity;
asInputFragments[iFragmentArrayCounter][5] = asInputSentences[i];
for(var j = 0; j < 6; j++) {
document.write(" Element " + i + "@" + j + " ===== " + asInputFragments[iFragmentArrayCounter][j] + "=====");
}
iFragmentArrayCounter++;
} else {
document.write(" ERROR? " + i + " = " + asInputSentences[i]);
}
//document.write(" Element " + i + " = " + sLatestTitle + " " + sLatestQueryName + " " + sLatestElementName + " " + iLatestQuantity);
}
}
// Just for debugging ...
for(var i = 0; i < iFragmentArrayCounter; i++) {
for(var j = 0; j < 6; j++) {
//console.log("Element " + i + "@" + j + " ===== " + (!asInputFragments[i][j] ? "NotDef" : asInputFragments[i][j]) );
}
}
return asInputFragments
}
catch(err) {
console.error(err);
}
} // END of function parseInputIntoArray
/*********************************************************************************
FUNCTION graph_singlesite_patient_number
Fills in the Div for a single patient number display
**********************************************************************************/
function graph_singlesite_patient_number(sDivName, sBreakdownType, asInputFragments) {
try {
if (sBreakdownType === undefined || sBreakdownType === null) throw ("ERROR - sBreakdownType in function graph_patient_breakdown is null");
var asBreakdownArray = [[]];
var iBreakdown = 0;
// for loop to only pull out data from the breakdown type specified in sBreakdownType variable
for (var i = 0; i < asInputFragments.length; i++) {
if (asInputFragments[i][1].toLowerCase().trim() === sBreakdownType.toLowerCase().trim()) {
//document.write(" OK? " + i + " = " + asInputFragments[i][0]);
asBreakdownArray[iBreakdown] = new Array (2);
asBreakdownArray[iBreakdown][0] = asInputFragments[i][3];
asBreakdownArray[iBreakdown][1] = asInputFragments[i][4];
iBreakdown++;
} else {
//document.write(" ERROR? " + i + " = " + asInputFragments[i][0]);
}
}
// establish style and draw out containing Div
var sDivStyle = "font-family: Verdana, Geneva, sans-serif;"
+ "font-size: 12px;"
+ "text-align: center;"
+ "vertical-align: middle;"
+ "background-color: white;"
+ "width: 100%;";
document.getElementById(sDivName).setAttribute("style",sDivStyle);
// establish table in Div and set up its style.
var sDisplayNumber = i2b2.CRC.view.graphs.sTexti2b2Value(asBreakdownArray[0][1]);
var sTableHtml = '
' +
'
' +
'
' +
'
' +
'
' +
'
'+sBreakdownType+'
' +
'
' +
'
' +
'
'+sDisplayNumber+'
' +
'
' +
'
' +
'
For Query '+asInputFragments[0][0]+'
' +
'
' +
'
' +
'
' +
'
' +
'
';
document.getElementById(sDivName).innerHTML = sTableHtml;
}
catch(err) {
console.error(err);
}
} // END of function graph_single_patient_number
/*********************************************************************************
FUNCTION graph_singlesite_patient_breakdown
function where the dataset is displayed
**********************************************************************************/
function graph_singlesite_patient_breakdown(sDivName,sBreakdownType,asInputFragments) {
try {
if (sBreakdownType === undefined || sBreakdownType === null) throw ("ERROR 101 in graph_patient_breakdown, sBreakdownType is null");
var asBreakdownArray = [[]];
var iBreakdown = 0;
// for loop to only pull out data from the breakdown type specified in sBreakdownType variable
// for multiple sites make a data array for each site
for (var i = 0; i < asInputFragments.length; i++) {
if (asInputFragments[i][1].toLowerCase().trim() === sBreakdownType.toLowerCase().trim()) {
//console.log("IN> " + i + " = " + asInputFragments[i][2]);
asBreakdownArray[iBreakdown] = new Array (3);
asBreakdownArray[iBreakdown][0] = asInputFragments[i][2]; // site
asBreakdownArray[iBreakdown][1] = asInputFragments[i][3]; // text
asBreakdownArray[iBreakdown][2] = asInputFragments[i][4]; // number
iBreakdown++;
} else {
//console.log("OUT> " + i + " = " + asInputFragments[i][0]); // items that were left out
}
}
// the text 'patient breakdown' is removed and remainder trimmed
var sBreakdownText = "";
var iPbLocation = sBreakdownType.toLowerCase().indexOf(" patient breakdown");
if (iPbLocation != -1) {
sBreakdownText = sBreakdownType.substring(0,iPbLocation);
//console.log(sBreakdownText + "|");
} else {
sBreakdownText = sBreakdownType;
//console.log(sBreakdownText + "it is");
}
// function where the dataset arrays are created:
var iBreakdown = 1;
var c3xaxis = new Array();
var c3values = new Array();
c3xaxis[0] = 'x';
c3values[0] = sBreakdownText;
for (var i = 0; i < asInputFragments.length; i++) {
if (asInputFragments[i][1].toLowerCase().trim() === sBreakdownType.toLowerCase().trim()) {
//document.write(" OK? " + i + " = " + asInputFragments[i][0]);
c3xaxis[iBreakdown] = asInputFragments[i][3];
c3values[iBreakdown] = asInputFragments[i][4];
iBreakdown++;
} else {
//document.write(" ERROR? " + i + " = " + asInputFragments[i][0]);
}
}
// Trying out some C3
var graph_color = 'darkblue';
//var graph_color = 'hsl(' + Math.floor( 360 * Math.random() ) + ', 85%, 55%)'; // random color
var chart = c3.generate({
bindto: '#' + sDivName,
size: {
//width: 535,
// height: 146
height: 196 //swc20171025 updated to prevent x-axis label clipping
},
data: {
x: 'x',
columns: [
c3xaxis,
c3values
],
type: 'bar',
color: function (color, d) {return graph_color;},
labels: {
format: {
y: function (v, id) {
if(i2b2.UI.cfg.useFloorThreshold){
if (v < i2b2.UI.cfg.floorThresholdNumber){
return i2b2.UI.cfg.floorThresholdText + i2b2.UI.cfg.floorThresholdNumber.toString();
}
}
if (i2b2.PM.model.isObfuscated) {
if(v == 0){
return i2b2.CRC.view.graphs.sObfuscatedText;
} else {
return v + i2b2.CRC.view.graphs.sObfuscatedEnding.replace(/\±/g, " +/- ");
}
} else {
return v;
}
}
}
}
},
legend: {
//position: 'inset'
position: 'right',
},
axis: {
x: {
type: 'category',
tick: {
// rotate: 25
rotate: -45,//swc20171027 updated to improve readability
multiline: false //swc20171027 added to improve readability (prevents random wrapping of labels)
},
// height: 45
height: 95 //swc20171025 updated to prevent x-axis label clipping
},
y: {
label: {
text: 'Number of Patients',
//position: 'outer-middle',
position: 'outer-bottom'
}
}
},
bar: {
width: {
ratio: 0.75 // this makes bar width 75% of length between ticks
}
}
});
}
catch(err) {
console.error(err);
}
}; // end of function graph_singlesite_patient_breakdown
/*********************************************************************************
FUNCTION graph_multiplesite_patient_number
Fills in the Div for multiple patient number display
**********************************************************************************/
function graph_multiplesite_patient_number(sDivName,sBreakdownType,asInputFragments) {
try {
if (sBreakdownType === undefined || sBreakdownType === null) throw ("ERROR - sBreakdownType in function graph_patient_breakdown is null");
var asBreakdownArray = [[]];
var iBreakdown = 0;
// for loop to only pull out data from the breakdown type specified in sBreakdownType variable
// for multiple sites make a data array for each site
for (var i = 0; i < asInputFragments.length; i++) {
if (asInputFragments[i][1].toLowerCase().trim() === sBreakdownType.toLowerCase().trim()) {
//console.log("IN> " + i + " = " + asInputFragments[i][2]);
asBreakdownArray[iBreakdown] = new Array (3);
asBreakdownArray[iBreakdown][0] = asInputFragments[i][2]; // site
asBreakdownArray[iBreakdown][1] = asInputFragments[i][3]; // text
asBreakdownArray[iBreakdown][2] = asInputFragments[i][4]; // number
iBreakdown++;
} else {
//console.log("OUT> " + i + " = " + asInputFragments[i][0]); // items that were left out
}
}
// function where the dataset arrays are created:
var c3values = new Array();
for (var i = 0; i < asBreakdownArray.length; i++) {
//console.log("Element " + i + " = " + asBreakdownArray[i][0] + " " + asBreakdownArray[i][2]);
c3values[i] = new Array(2);
c3values[i][0] = asBreakdownArray[i][0].trim() + " " + asBreakdownArray[i][1].trim();
c3values[i][1] = Number(asBreakdownArray[i][2]);
}
// C3 that makes pie chart
var chart = c3.generate({
bindto: '#' + sDivName,
size: {
width: 535,
// height: 146
height: 196 //swc20171025 updated to prevent x-axis label clipping
},
data: {
columns: c3values,
type: 'pie',
//labels: false
},
pie: {
label: {
format: d3.format('^g,')
},
},
legend: {
//position: 'inset'
position: 'right',
},
axis: {
x: {
type: 'category',
tick: {
// rotate: 25
rotate: -45,//swc20171027 updated to improve readability
multiline: false //swc20171027 added to improve readability (prevents random wrapping of labels)
},
// height: 45
height: 95 //swc20171025 updated to prevent x-axis label clipping
},
y: {
label: {
text: 'Number of Patients',
//position: 'outer-middle',
position: 'outer-bottom'
}
}
},
bar: {
width: {
ratio: 0.75 // this makes bar width 75% of length between ticks
}
}
});
}
catch(err) {
console.error(err);
}
}; // end of function graph_multiplesite_patient_number
/*********************************************************************************
FUNCTION graph_multiplesite_patient_breakdown
function where the dataset is displayed
**********************************************************************************/
function graph_multiplesite_patient_breakdown(sDivName,sBreakdownType,asInputFragments) {
try {
if (sBreakdownType === undefined || sBreakdownType === null) throw ("ERROR 101 in graph_patient_breakdown, sBreakdownType is null");
var asBreakdownArray = [[]];
var iBreakdown = 0;
// for loop to only pull out data from the breakdown type specified in sBreakdownType variable
// for multiple sites make a data array for each site
for (var i = 0; i < asInputFragments.length; i++) {
if (asInputFragments[i][1].toLowerCase().trim() === sBreakdownType.toLowerCase().trim()) {
//console.log("IN> " + i + " = " + asInputFragments[i][2]);
asBreakdownArray[iBreakdown] = new Array (3);
asBreakdownArray[iBreakdown][0] = asInputFragments[i][2]; // site
asBreakdownArray[iBreakdown][1] = asInputFragments[i][3]; // text
asBreakdownArray[iBreakdown][2] = asInputFragments[i][4]; // number
iBreakdown++;
} else {
//console.log("OUT> " + i + " = " + asInputFragments[i][0]); // items that were left out
}
}
// the text 'patient breakdown' is removed and remainder trimmed
var sBreakdownText = "";
var iPbLocation = sBreakdownType.toLowerCase().indexOf(" patient breakdown");
if (iPbLocation != -1) {
sBreakdownText = sBreakdownType.substring(0,iPbLocation);
//console.log(sBreakdownText + "|");
} else {
sBreakdownText = sBreakdownType;
//console.log(sBreakdownText + "it is");
}
// Pull out unique sites from the breakdown array
var asBreakdownSites = [];
var iBreakdown = 0;
for (var i = 0; i < asBreakdownArray.length; i++) {
asBreakdownSites[iBreakdown] = asBreakdownArray[i][0].trim();
iBreakdown++;
}
var asUniqueBreakdownSites = [];
for (var i=0; i < asBreakdownSites.length; i++) {
if (asUniqueBreakdownSites.indexOf(asBreakdownSites[i]) === -1 && asBreakdownSites[i] !== '')
asUniqueBreakdownSites.push(asBreakdownSites[i]);
}
if (asUniqueBreakdownSites.length === 0) throw("ERROR 102 in graph_patient_breakdown, asUniqueBreakdownSites array is null");
console.log(asUniqueBreakdownSites);
// set up an array from one site which can be determined or just the first
var sSiteToGetBreakdownsFrom = "";
if (msSpecialBreakdownSite.trim().length != 0) {
sSiteToGetBreakdownsFrom = msSpecialBreakdownSite.trim();
}
else {
sSiteToGetBreakdownsFrom = asUniqueBreakdownSites[0].trim();
}
if (sSiteToGetBreakdownsFrom.length === 0) throw("ERROR 103 in graph_patient_breakdown, sSiteToGetBreakdownsFrom is empty");
// set up a data vector from the sSiteToGetBreakdownsFrom
var iBreakdown = 1;
var c3xaxis = new Array();
var c3values = new Array();
c3xaxis[0] = 'x';
c3values[0] = sSiteToGetBreakdownsFrom;
for (var i = 0; i < asBreakdownArray.length; i++) {
if (asBreakdownArray[i][0].toLowerCase().trim() === sSiteToGetBreakdownsFrom.toLowerCase().trim()) {
//document.write(" OK? " + i + " = " + asBreakdownArray[i][0]);
c3xaxis[iBreakdown] = asBreakdownArray[i][1];
c3values[iBreakdown] = asBreakdownArray[i][2];
iBreakdown++;
} else {
//document.write(" ERROR? " + i + " = " + asBreakdownArray[i][0]);
}
}
var c3dataarray = Array();
c3dataarray[0] = c3xaxis;
c3dataarray[1] = c3values;
if (asUniqueBreakdownSites.length > 1) {
for (var j = 1; j < asUniqueBreakdownSites.length; j++) {
var iBreakdown = 1;
var c3values = new Array();
c3values[0] = asUniqueBreakdownSites[j];
for (var i = 0; i < asBreakdownArray.length; i++) {
if (asUniqueBreakdownSites[j].toLowerCase().trim() === asBreakdownArray[i][0].toLowerCase().trim()) {
//document.write(" OK? " + i + " = " + asBreakdownArray[i][0]);
//c3xaxis[iBreakdown] = asBreakdownArray[i][1];
c3values[iBreakdown] = asBreakdownArray[i][2];
iBreakdown++;
} else {
//document.write(" ERROR? " + i + " = " + asBreakdownArray[i][0]);
}
}
c3dataarray[j+1] = c3values;
}
/*
var iBreakdown = 1;
var c3xaxis = new Array();
var c3values = new Array();
c3xaxis[0] = 'x';
c3values[0] = sBreakdownText;
for (var i = 0; i < asInputFragments.length; i++) {
if (asInputFragments[i][1].toLowerCase().trim() === sBreakdownType.toLowerCase().trim()) {
//document.write(" OK? " + i + " = " + asInputFragments[i][0]);
c3xaxis[iBreakdown] = asInputFragments[i][3];
c3values[iBreakdown] = asInputFragments[i][4];
iBreakdown++;
} else {
//document.write(" ERROR? " + i + " = " + asInputFragments[i][0]);
}
}
*/
}
// Trying out some C3
//var colors = ['darkblue', 'darkblue', 'darkblue', 'darkblue', 'darkblue', 'darkblue', 'darkblue', 'darkblue', 'darkblue'];
var chart = c3.generate({
bindto: '#' + sDivName,
size: {
width: 535,
// height: 146
height: 196 //swc20171025 updated to prevent x-axis label clipping
},
data: {
x: 'x',
columns: c3dataarray,
type: 'bar',
groups: [asUniqueBreakdownSites],
//groups: asUniqueBreakdownSites
//color: function (color, d) {return colors[d.index];}
//labels: false
},
legend: {
//position: 'inset'
position: 'right',
},
axis: {
x: {
type: 'category',
tick: {
// rotate: 25
rotate: -45,//swc20171027 updated to improve readability
multiline: false //swc20171027 added to improve readability (prevents random wrapping of labels)
},
// height: 45
height: 95 //swc20171025 updated to prevent x-axis label clipping
},
y: {
label: {
text: 'Number of Patients',
//position: 'outer-middle',
position: 'outer-bottom'
}
}
},
bar: {
width: {
ratio: 0.75 // this makes bar width 75% of length between ticks
}
}
});
}
catch(err) {
console.error(err);
}
}; // end of function graph_multiplesite_patient_breakdown
/*********************************************************************************
FUNCTION ie
function to test for the version of internet explorer
usage if ie < 9 then ...
**********************************************************************************/
var ie = (function(){
var undef,
v = 3,
div = document.createElement('div'),
all = div.getElementsByTagName('i');
while (
div.innerHTML = '',
all[0]
);
return v > 4 ? v : undef;
}());
/*********************************************************************************
FUNCTION bisGTIE8
function to specifically test for internet explorer gt 8 or any other browser
which returns "true"
usage if bisGTIE8 then ...
**********************************************************************************/
i2b2.CRC.view.graphs.bisGTIE8 = (function(){
try {
if ( document.addEventListener ) {
//alert("you got IE9 or greater (or a modern browser)");
return true;
}
else {
return false;
}
}
catch (e) {
return false;
}
}());
/*********************************************************************************
FUNCTION sValueOfi2b2Text
Return a INTEGER number that was obfuscated = MAKES IT ZERO
**********************************************************************************/
i2b2.CRC.view.graphs.sValueOfi2b2Text = function(sValue) {
try {
if (sValue === undefined || sValue === null || sValue === "") {
iValue = "undefined in";
return iValue;
}
if (i2b2.PM.model.isObfuscated) {
var asTempArray = [];
if (sValue.toLowerCase().trim() == i2b2.CRC.view.graphs.sObfuscatedText.toLowerCase().trim()) {
iValue = "0";
}
else {
if (sValue.indexOf(i2b2.CRC.view.graphs.sObfuscatedEnding) > 0) {
var asTempArray = sValue.split(i2b2.CRC.view.graphs.sObfuscatedEnding);
iValue = asTempArray[0];
}
else {
iValue = sValue;
}
}
}
else {
iValue = sValue;
}
if(i2b2.UI.cfg.useFloorThreshold){
if (sValue.trim() == i2b2.UI.cfg.floorThresholdText + i2b2.UI.cfg.floorThresholdNumber.toString()){
iValue = "0";
}
}
function isNumber(obj) {return ! isNaN(obj-0) && obj; };
if (!isNumber(iValue)) {
iValue = "undefined #";
return iValue;
}
return iValue;
}
catch(err) {
console.error(err);
}
} // END of function sValueOfi2b2Text
/*********************************************************************************
FUNCTION sTexti2b2Value
Return a TEXT number that has obfuscated blurring - FOR DISPLAY ONLY
**********************************************************************************/
i2b2.CRC.view.graphs.sTexti2b2Value = function(iValue) {
try {
if (iValue === undefined || iValue === null || iValue === "") {
sValue = "undefined";
return sValue;
}
function isNumber(obj) {return ! isNaN(obj-0) && obj; };
if (!isNumber(iValue)) {
sValue = "undefined";
return sValue;
}
if (iValue >= i2b2.CRC.view.graphs.iObfuscatedFloorNumber) {
if (i2b2.PM.model.isObfuscated) {
sValue = iValue+i2b2.CRC.view.graphs.sObfuscatedEnding;
} else {
sValue = iValue;
}
} else {
if (i2b2.PM.model.isObfuscated) {
sValue = i2b2.CRC.view.graphs.sObfuscatedText;
} else {
sValue = iValue;
}
}
if(i2b2.UI.cfg.useFloorThreshold){
if(iValue < i2b2.UI.cfg.floorThresholdNumber){
sValue = i2b2.UI.cfg.floorThresholdText + i2b2.UI.cfg.floorThresholdNumber.toString()
}
}
return sValue;
}
catch(err) {
console.error(err);
}
} // END of function sTexti2b2Value
/*********************************************************************************
FUNCTION clearGraphs
Clear the previously used Div for the graphs
**********************************************************************************/
i2b2.CRC.view.graphs.clearGraphs = function(sDivNameToClear) {
try {
if (sDivNameToClear === undefined || sDivNameToClear === null || sDivNameToClear === "")
throw ("ERROR 291 - i2b2.CRC.view.graphs.sNameOfPreviousDiv in function clearGraphs is null");
//Clear Divs in the original div for the charts
var oClearDiv = document.getElementById(sDivNameToClear);
oClearDiv.innerHTML = "";
}
catch(err) {
console.error(err);
}
} // END of function clearGraphs
/*********************************************************************************
FUNCTION clearDivForIE8
Clear Div and put message in the middle that "The Graphs Cannot Display in IE8"
**********************************************************************************/
i2b2.CRC.view.graphs.aDivForIE8 = function(sDivNameToClear) {
try {
if (sDivNameToClear === undefined || sDivNameToClear === null || sDivNameToClear === "")
throw ("ERROR 291 - i2b2.CRC.view.graphs.sNameOfPreviousDiv in function clearGraphs is null");
// Clear Divs in the original div for the charts
var oClearDiv = document.getElementById(sDivNameToClear);
var child = document.createElement("div");
child.setAttribute("id","IE_Div");
child.setAttribute("width","auto");
oClearDiv.appendChild(child);
// establish style and draw out containing Div
var sDivStyle = "font-family: Verdana, Geneva, sans-serif;"
+ "font-size: 12px;"
+ "text-align: center;"
+ "vertical-align: middle;"
+ "background-color: white;"
+ "width: 100%;";
child.setAttribute("style",sDivStyle);
// establish table in Div and set up its style.
var sTableHtml = '
' +
'
' +
'
' +
'
' +
'
' +
'
Graph Results is not supported for this version
' +
'
' +
'
' +
'
of Internet Explorer. In order to display the graphs in
' +
'
' +
'
' +
'
Internet Explorer you will need to use version 11 or higher.
' +
'
' +
'
' +
'
' +
'
' +
'
';
child.innerHTML = sTableHtml;
}
catch(err) {
console.error(err);
}
} // END of function clearDivForIE8
/*********************************************************************************
FUNCTION returnTestString
function to create some sample text input for a demo
**********************************************************************************/
i2b2.CRC.view.graphs.returnTestString = function (isSHRINE) {
var sInput = "";
if (!isSHRINE) {
sInput = "Patient Set for \"Circulatory sys@20:21:19\"\n"
+ "Age patient breakdown for \"Circulatory sys@20:21:19\"\n"
+ "0-9 years old: 0\n"
+ "10-17 years old: 1\n"
+ "18-34 years old: 20\n"
+ "35-44 years old: 12\n"
+ "45-54 years old: 12\n"
+ "55-64 years old: 5\n"
+ "65-74 years old: 9\n"
+ "75-84 years old: 4\n"
+ ">= 85 years old: 3\n"
+ "Not recorded: 0\n"
+ "Number of patients for \"Circulatory sys@20:21:19\"\n"
+ "patient_count: 66\n"
+ "Vital Status patient breakdown for \"Circulatory sys@20:21:19\"\n"
+ "Deceased: 1\n"
+ "Deferred: 0\n"
+ "Living: 65\n"
+ "Not recorded: 0";
}
else {
sInput = 'Finished Query: \"Diseases of the@19:12:10\"\n'
+ '[1.7 secs]\n'
+ '\n'
+ 'Compute Time: 1.7 secs\n'
+ '\n'
+ 'Hospital 1 \"Diseases of the@19:12:10\"\n' // Pattern is in these two lines
+ 'Patient Count: - 67 +-3 patients\n' // to define new hospital
+ '\n'
+ 'Patient Age Count Breakdown:\n'
+ '0-9 years old: - 10 patients or fewer\n'
+ '10-17 years old: - 10 patients or fewer\n'
+ '18-34 years old: - 15 +-3 patients\n'
+ '35-44 years old: - 13 +-3 patients\n'
+ '45-54 years old: - 15 +-3 patients\n'
+ '55-64 years old: - 10 patients or fewer\n'
+ '65-74 years old: - 10 patients or fewer\n'
+ '75-84 years old: - 10 patients or fewer\n'
+ '>= 65 years old: - 18 +-3 patients\n'
+ '>= 85 years old: - 10 patients or fewer\n'
+ 'Not recorded: - 10 patients or fewer\n'
+ '\n'
+ 'Patient Gender Count Breakdown:\n'
+ 'Female: - 26 +-3 patients\n'
+ 'Male: - 40 +-3 patients\n'
+ 'Unknown: - 10 patients or fewer\n'
+ '\n'
+ 'Patient Race Count Breakdown:\n'
+ 'Aleutian: - 10 patients or fewer\n'
+ 'American Indian: - 10 patients or fewer\n'
+ 'Asian: - 10 +-3 patients\n'
+ 'Asian Pacific Islander: - 10 patients or fewer\n'
+ 'Black: - 25 +-3 patients\n'
+ 'Eskimo: - 10 patients or fewer\n'
+ 'Hispanic: - 20 +-3 patients\n'
+ 'Indian: - 10 patients or fewer\n'
+ 'Middle Eastern: - 10 patients or fewer\n'
+ 'Multiracial: - 10 patients or fewer\n'
+ 'Native American: - 10 patients or fewer\n'
+ 'Navajo: - 10 patients or fewer\n'
+ 'Not recorded: - 10 patients or fewer\n'
+ 'Oriental: - 10 patients or fewer\n'
+ 'Other: - 10 patients or fewer\n'
+ 'White: - 10 patients or fewer\n'
+ '\n'
+ 'Patient Vital Status Count Breakdown:\n'
+ 'Deceased: - 10 patients or fewer\n'
+ 'Deferred: - 10 patients or fewer\n'
+ 'Living: - 64 +-3 patients\n'
+ 'Not recorded: - 10 patients or fewer\n'
+ '\n'
+ 'Hospital 3 \"Diseases of the@19:12:10\"\n'
+ 'Patient Count: - 66 +-3 patients\n'
+ '\n'
+ 'Patient Age Count Breakdown:\n'
+ '0-9 years old: - 10 patients or fewer\n'
+ '10-17 years old: - 10 patients or fewer\n'
+ '18-34 years old: - 14 +-3 patients\n'
+ '35-44 years old: - 13 +-3 patients\n'
+ '45-54 years old: - 17 +-3 patients\n'
+ '55-64 years old: - 10 patients or fewer\n'
+ '65-74 years old: - 10 patients or fewer\n'
+ '75-84 years old: - 10 patients or fewer\n'
+ '>= 65 years old: - 15 +-3 patients\n'
+ '>= 85 years old: - 10 patients or fewer\n'
+ 'Not recorded: - 10 patients or fewer\n'
+ '\n'
+ 'Patient Gender Count Breakdown:\n'
+ 'Female: - 26 +-3 patients\n'
+ 'Male: - 38 +-3 patients\n'
+ 'Unknown: - 10 patients or fewer\n'
+ '\n'
+ 'Patient Race Count Breakdown:\n'
+ 'Aleutian: - 10 patients or fewer\n'
+ 'American Indian: - 10 patients or fewer\n'
+ 'Asian: - 12 +-3 patients\n'
+ 'Asian Pacific Islander: - 10 patients or fewer\n'
+ 'Black: - 25 +-3 patients\n'
+ 'Eskimo: - 10 patients or fewer\n'
+ 'Hispanic: - 15 +-3 patients\n'
+ 'Indian: - 10 patients or fewer\n'
+ 'Middle Eastern: - 10 patients or fewer\n'
+ 'Multiracial: - 10 patients or fewer\n'
+ 'Native American: - 10 patients or fewer\n'
+ 'Navajo: - 10 patients or fewer\n'
+ 'Not recorded: - 10 patients or fewer\n'
+ 'Oriental: - 10 patients or fewer\n'
+ 'Other: - 10 patients or fewer\n'
+ 'White: - 10 patients or fewer\n'
+ '\n'
+ 'Patient Vital Status Count Breakdown:\n'
+ 'Deceased: - 10 patients or fewer\n'
+ 'Deferred: - 10 patients or fewer\n'
+ 'Living: - 66 +-3 patients\n'
+ 'Not recorded: - 10 patients or fewer\n'
+ '\n'
+ 'Hospital 4 \"Diseases of the@19:12:10\"\n'
+ 'Patient Count: - 67 +-3 patients\n'
+ '\n'
+ 'Patient Age Count Breakdown:\n'
+ '0-9 years old: - 10 patients or fewer\n'
+ '10-17 years old: - 10 patients or fewer\n'
+ '18-34 years old: - 17 +-3 patients\n'
+ '35-44 years old: - 15 +-3 patients\n'
+ '45-54 years old: - 14 +-3 patients\n'
+ '55-64 years old: - 10 patients or fewer\n'
+ '65-74 years old: - 10 patients or fewer\n'
+ '75-84 years old: - 10 patients or fewer\n'
+ '>= 65 years old: - 17 +-3 patients\n'
+ '>= 85 years old: - 10 patients or fewer\n'
+ 'Not recorded: - 10 patients or fewer\n'
+ '\n'
+ 'Patient Gender Count Breakdown:\n'
+ 'Female: - 23 +-3 patients\n'
+ 'Male: - 40 +-3 patients\n'
+ 'Unknown: - 10 patients or fewer\n'
+ '\n'
+ 'Patient Race Count Breakdown:\n'
+ 'Aleutian: - 10 patients or fewer\n'
+ 'American Indian: - 10 patients or fewer\n'
+ 'Asian: - 13 +-3 patients\n'
+ 'Asian Pacific Islander: - 10 patients or fewer\n'
+ 'Black: - 24 +-3 patients\n'
+ 'Eskimo: - 10 patients or fewer\n'
+ 'Hispanic: - 18 +-3 patients\n'
+ 'Indian: - 10 patients or fewer\n'
+ 'Middle Eastern: - 10 patients or fewer\n'
+ 'Multiracial: - 10 patients or fewer\n'
+ 'Native American: - 10 patients or fewer\n'
+ 'Navajo: - 10 patients or fewer\n'
+ 'Not recorded: - 10 patients or fewer\n'
+ 'Oriental: - 10 patients or fewer\n'
+ 'Other: - 10 patients or fewer\n'
+ 'White: - 10 patients or fewer\n'
+ '\n'
+ 'Patient Vital Status Count Breakdown:\n'
+ 'Deceased: - 10 patients or fewer\n'
+ 'Deferred: - 10 patients or fewer\n'
+ 'Living: - 65 +-3 patients\n'
+ 'Not recorded: - 10 patients or fewer\n'
+ '\n'
+ 'Hospital 2 \"Diseases of the@19:12:10\"\n'
+ 'Patient Count: - 68 +-3 patients\n'
+ '\n'
+ 'Patient Age Count Breakdown:\n'
+ '0-9 years old: - 10 patients or fewer\n'
+ '10-17 years old: - 10 patients or fewer\n'
+ '18-34 years old: - 16 +-3 patients\n'
+ '35-44 years old: - 16 +-3 patients\n'
+ '45-54 years old: - 13 +-3 patients\n'
+ '55-64 years old: - 10 patients or fewer\n'
+ '65-74 years old: - 10 patients or fewer\n'
+ '75-84 years old: - 10 patients or fewer\n'
+ '>= 65 years old: - 16 +-3 patients\n'
+ '>= 85 years old: - 10 patients or fewer\n'
+ 'Not recorded: - 10 patients or fewer\n'
+ '\n'
+ 'Patient Gender Count Breakdown:\n'
+ 'Female: - 24 +-3 patients\n'
+ 'Male: - 40 +-3 patients\n'
+ 'Unknown: - 10 patients or fewer\n'
+ '\n'
+ 'Patient Race Count Breakdown:\n'
+ 'Aleutian: - 10 patients or fewer\n'
+ 'American Indian: - 10 patients or fewer\n'
+ 'Asian: - 14 +-3 patients\n'
+ 'Asian Pacific Islander: - 10 patients or fewer\n'
+ 'Black: - 25 +-3 patients\n'
+ 'Eskimo: - 10 patients or fewer\n'
+ 'Hispanic: - 18 +-3 patients\n'
+ 'Indian: - 10 patients or fewer\n'
+ 'Middle Eastern: - 10 patients or fewer\n'
+ 'Multiracial: - 10 patients or fewer\n'
+ 'Native American: - 10 patients or fewer\n'
+ 'Navajo: - 10 patients or fewer\n'
+ 'Not recorded: - 10 patients or fewer\n'
+ 'Oriental: - 10 patients or fewer\n'
+ 'Other: - 10 patients or fewer\n'
+ 'White: - 10 patients or fewer\n'
+ '\n'
+ 'Patient Vital Status Count Breakdown:\n'
+ 'Deceased: - 10 patients or fewer\n'
+ 'Deferred: - 10 patients or fewer\n'
+ 'Living: - 65 +-3 patients\n'
+ 'Not recorded: - 10 patients or fewer\n';
}
/*else { // this was the original guess of SHRINE output
sInput = "Patient Set for \"Circulatory sys@20:21:19\" = Partners\n"
+ "Age patient breakdown for \"Circulatory sys@20:21:19\" = Partners\n"
+ "0-9 years old: 422\n"
+ "10-17 years old: 1013\n"
+ "18-34 years old: 5009\n"
+ "35-44 years old: 12788\n"
+ "45-54 years old: 12768\n"
+ "55-64 years old: 5786\n"
+ "65-74 years old: 977\n"
+ "75-84 years old: 454\n"
+ ">= 85 years old: 356\n"
+ "Not recorded: 0\n"
+ "Number of patients for \"Circulatory sys@20:21:19\" = Partners\n"
+ "patient_count: 203866\n"
+ "Vital Status patient breakdown for \"Circulatory sys@20:21:19\" = Partners\n"
+ "Deceased: 1\n"
+ "Deferred: 0\n"
+ "Living: 65\n"
+ "Not recorded: 0\n"
+ "Patient Set for \"Circulatory sys@20:21:19\" = CHB\n"
+ "Age patient breakdown for \"Circulatory sys@20:21:19\" = CHB\n"
+ "0-9 years old: 7483\n"
+ "10-17 years old: 1544\n"
+ "18-34 years old: 2055\n"
+ "35-44 years old: 124\n"
+ "45-54 years old: 125\n"
+ "55-64 years old: 51\n"
+ "65-74 years old: 9\n"
+ "75-84 years old: 0\n"
+ ">= 85 years old: 0\n"
+ "Not recorded: 0\n"
+ "Number of patients for \"Circulatory sys@20:21:19\" = CHB\n"
+ "patient_count: 66876\n"
+ "Vital Status patient breakdown for \"Circulatory sys@20:21:19\" = CHB\n"
+ "Deceased: 1\n"
+ "Deferred: 0\n"
+ "Living: 65\n"
+ "Not recorded: 0\n"
+ "Patient Set for \"Circulatory sys@20:21:19\" = BIDMC\n"
+ "Age patient breakdown for \"Circulatory sys@20:21:19\" = BIDMC\n"
+ "0-9 years old: 0\n"
+ "10-17 years old: 156\n"
+ "18-34 years old: 2066\n"
+ "35-44 years old: 1266\n"
+ "45-54 years old: 12456\n"
+ "55-64 years old: 5655\n"
+ "65-74 years old: 9546\n"
+ "75-84 years old: 4555\n"
+ ">= 65 years old: 1653\n"
+ ">= 85 years old: 334\n"
+ "Not recorded: 45\n"
+ "Number of patients for \"Circulatory sys@20:21:19\" = BIDMC\n"
+ "patient_count: 676806\n"
+ "Vital Status patient breakdown for \"Circulatory sys@20:21:19\" = BIDMC\n"
+ "Deceased: 1\n"
+ "Deferred: 0\n"
+ "Living: 65\n"
+ "Not recorded: 0\n"
+ "Patient Set for \"Circulatory sys@20:21:19\" = DFCI\n"
+ "Age patient breakdown for \"Circulatory sys@20:21:19\" = DFCI\n"
+ "0-9 years old: 0\n"
+ "10-17 years old: 1\n"
+ "18-34 years old: 20\n"
+ "35-44 years old: 12\n"
+ "45-54 years old: 12\n"
+ "55-64 years old: 5\n"
+ "65-74 years old: 9\n"
+ "75-84 years old: 4\n"
+ ">= 65 years old: 16\n"
+ ">= 85 years old: 3\n"
+ "Not recorded: 0\n"
+ "Number of patients for \"Circulatory sys@20:21:19\" = DFCI\n"
+ "patient_count: 85647\n"
+ "Vital Status patient breakdown for \"Circulatory sys@20:21:19\" = DFCI\n"
+ "Deceased: 1\n"
+ "Deferred: 0\n"
+ "Living: 65\n"
+ "Not recorded: 0\n";
}*/
return sInput;
}
//console.timeEnd('execute time');
//console.groupEnd();
