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/**
* @projectDescription (GUI-only) Master Controller for CRC Query Tool's Value constraint dialog boxes.
* @inherits i2b2.CRC.view
* @namespace i2b2.CRC.view.modLabvaluesCtlr
* @author Bhaswati Ghosh
* @version
* ----------------------------------------------------------------------------------------
*/
i2b2.CRC.view.modLabvaluesCtlr = {
//Is called when a concept that has lab values associated is dropped in the query panel
selectValueBox: function(panelIndex, queryPanelController, key, extData, isModifier,pluginObj) {
if (!pluginObj && Object.isUndefined(i2b2.CRC.model.queryCurrent.panels[i2b2.CRC.ctrlr.QT.temporalGroup][panelIndex])) { return; }
//Determine the value type
var mdnodes = i2b2.h.XPath(extData.origData.xmlOrig, 'descendant::metadataxml/ValueMetadata[Version]');
if (mdnodes.length > 0) {
var dataType = i2b2.h.getXNodeVal(mdnodes[0], 'DataType');
if(dataType)
var valueType = this.getValueType(dataType);
else
var valueType = "NODATATYPE";
} else {
// no LabValue configuration
return false;
}
// notify the value type's controller class to activate
try {
if(valueType){
var GeneralValueType = valueType;
i2b2.CRC.view[GeneralValueType].showDialog(panelIndex, queryPanelController, key, extData, isModifier,pluginObj);
}
else
alert('An error has occurred while trying to determine the value type.');
} catch(e) {
alert('An error has occurred while trying to initialize the Valuebox.');
}
},
getValueType : function(dataType)
{
if(!i2b2.ValueTypes.type.hasOwnProperty(dataType))
var valuetype = i2b2.ValueTypes.type["DEFAULT"];
else
var valueType = i2b2.ValueTypes.type[dataType];
return valueType;
},
//Does the initial loading of the LabValues object for related concepts when a previous query is loaded in the query panel.
processLabValuesForQryLoad : function(lvd)
{
// pull the LabValue definition for concept, extract & translate
var t = i2b2.h.getXNodeVal(lvd,"value_constraint");
LabValues = {};
LabValues.NumericOp = i2b2.h.getXNodeVal(lvd,"value_operator");
LabValues.GeneralValueType = i2b2.h.getXNodeVal(lvd,"value_type");
switch(LabValues.GeneralValueType) {
case "NUMBER":
LabValues.MatchBy = "VALUE";
if (t.indexOf(' and ')!=-1) {
// extract high and low values
t = t.split(' and ');
LabValues.ValueLow = t[0];
LabValues.ValueHigh = t[1];
} else {
LabValues.Value = t;
}
LabValues.UnitsCtrl = i2b2.h.getXNodeVal(lvd,"value_unit_of_measure");
break;
case "STRING":
LabValues.MatchBy = "VALUE";
LabValues.ValueString = t;
break;
case "LARGETEXT":
LabValues.MatchBy = "VALUE";
LabValues.GeneralValueType = "LARGESTRING";
LabValues.DbOp = (i2b2.h.getXNodeVal(lvd,"value_operator") == "CONTAINS[database]" ? true : false );
LabValues.ValueString = t;
break;
case "TEXT": // this means Enum?
LabValues.MatchBy = "VALUE";
try {
LabValues.ValueEnum = eval("(Array"+t+")");
LabValues.GeneralValueType = "ENUM";
} catch(e) {
//is a string
LabValues.StringOp = i2b2.h.getXNodeVal(lvd,"value_operator");
LabValues.ValueString = t;
LabValues.GeneralValueType = "STRING";
}
break;
case "FLAG":
LabValues.MatchBy = "FLAG";
LabValues.ValueFlag = t
break;
default:
LabValues.Value = t;
}
return LabValues;
},
//Does the initial loading of the ModValues object for related concepts when a previous query is loaded in the query panel.
processModValuesForQryLoad : function(lvd)
{
ModValues = {};
// pull the LabValue definition for concept, extract & translate
var t = i2b2.h.getXNodeVal(lvd,"value_constraint");
ModValues.NumericOp = i2b2.h.getXNodeVal(lvd,"value_operator");
ModValues.GeneralValueType = i2b2.h.getXNodeVal(lvd,"value_type");
switch(ModValues.GeneralValueType) {
case "NUMBER":
ModValues.MatchBy = "VALUE";
if (t.indexOf(' and ')!=-1) {
// extract high and low values
t = t.split(' and ');
ModValues.ValueLow = t[0];
ModValues.ValueHigh = t[1];
} else {
ModValues.Value = t;
}
ModValues.UnitsCtrl = i2b2.h.getXNodeVal(lvd,"value_unit_of_measure");
break;
case "STRING":
ModValues.MatchBy = "VALUE";
ModValues.ValueString = t;
break;
case "LARGETEXT":
ModValues.MatchBy = "VALUE";
ModValues.GeneralValueType = "LARGESTRING";
ModValues.DbOp = (i2b2.h.getXNodeVal(lvd,"value_operator") == "CONTAINS[database]" ? true : false );
ModValues.ValueString = t;
break;
case "TEXT": // this means Enum?
ModValues.MatchBy = "VALUE";
try {
ModValues.ValueEnum = eval("(Array"+t+")");
ModValues.GeneralValueType = "ENUM";
}
catch(e) {
ModValues.StringOp = i2b2.h.getXNodeVal(lvd,"value_operator");
ModValues.ValueString = t;
}
break;
case "FLAG":
ModValues.MatchBy = "FLAG";
ModValues.ValueFlag = t
break;
default:
ModValues.Value = t;
}
return ModValues;
},
//Creates the text to be displayed in the query panel when a previous query with concepts having labvalues is dropped
getTitleForValues : function(values,sdxConcept)
{
var title = "";
switch(values.MatchBy) {
case "FLAG":
title = ' = '+i2b2.h.Escape(values.ValueFlag);
//mm ??not sure tvChildren[i].html = ' = '+i2b2.h.Escape(values.ValueFlag) + "
";
break;
case "VALUE":
if ((values.GeneralValueType== "LARGESTRING") || (values.GeneralValueType=="TEXT")) {
title = ' = ("' + values.ValueString +'")';
try
{
var conceptPath = sdxConcept.origData.key;
if(conceptPath && conceptPath.indexOf("genomics")>=0)
title = ' [contains "' + values.ValueString +'"]';
}
catch(e)
{}
} else if (values.GeneralValueType=="STRING") {
if (values.StringOp == undefined )
{
var stringOp = "";
}
else
{
switch(values.StringOp) {
case "LIKE[exact]":
var stringOp = "Exact: ";
break;
case "LIKE[begin]":
var stringOp = "Starts With: ";
break;
case "LIKE[end]":
var stringOp = "Ends With: ";
break;
case "LIKE[contains]":
var stringOp = "Contains: ";
break;
default:
var stringOp = "";
break;
}
}
title += ' ['+stringOp + i2b2.h.Escape(values.ValueString) + "]";
} else if (values.GeneralValueType=="GENOTYPE") {
title = ' [contains "' + values.WholeValueString +'"]';
} else if (values.GeneralValueType=="ENUM") {
try {
var sEnum = [];
for (var i2=0;i2"
title = sEnum;
} catch (e) {
}
} else {
if (values.NumericOp == 'BETWEEN') {
title = ' '+i2b2.h.Escape(values.ValueLow)+' - '+i2b2.h.Escape(values.ValueHigh);
} else {
switch(values.NumericOp) {
case "LT":
var numericOp = " < ";
break;
case "LE":
var numericOp = " <= ";
break;
case "EQ":
var numericOp = " = ";
break;
case "GT":
var numericOp = " > ";
break;
case "GE":
var numericOp = " >= ";
break;
case "":
break;
}
title = numericOp +i2b2.h.Escape(values.Value);
}
if (!Object.isUndefined(values.UnitsCtrl))
{
title += " " + values.UnitsCtrl;
}
}
break;
case "":
break;
}
return title;
},
//Creates the xml part for the concept with a lab value when a query request xml is generated
getModLabValuesForXML : function(lvd) {
if(!lvd.MatchBy) return;
var s = '\t\t\t\n';
switch(lvd.MatchBy) {
case "FLAG":
s += '\t\t\t\tFLAG\n';
s += '\t\t\t\tEQ\n';
s += '\t\t\t\t'+i2b2.h.Escape(lvd.ValueFlag)+'\n';
break;
case "VALUE":
if (lvd.GeneralValueType=="ENUM") {
var sEnum = [];
for (var i2=0;i2\n';
s += '\t\t\t\tIN\n';
} else if ((lvd.GeneralValueType=="STRING") || (lvd.GeneralValueType=="TEXT")){
s += '\t\t\t\tTEXT\n';
s += '\t\t\t\t'+lvd.StringOp+'\n';
s += '\t\t\t\t\n';
} else if (lvd.GeneralValueType=="LARGESTRING") {
if (lvd.DbOp) {
s += '\t\t\t\tCONTAINS[database]\n';
} else {
s += '\t\t\t\tCONTAINS\n';
}
s += '\t\t\t\tLARGETEXT\n';
s += '\t\t\t\t\n';
} else if (lvd.GeneralValueType=="GENOTYPE") {
s += '\t\t\t\tCONTAINS[database]\n'; //mandate the contains[database] operation
s += '\t\t\t\tLARGETEXT\n';
var cdataText = lvd.cdataTextValue;
if(!cdataText)
cdataText = lvd.WholeValueString;
s += '\t\t\t\t\n';
} else {
s += '\t\t\t\t'+lvd.GeneralValueType+'\n';
s += '\t\t\t\t'+lvd.UnitsCtrl+'\n';
s += '\t\t\t\t'+lvd.NumericOp+'\n';
if (lvd.NumericOp == 'BETWEEN') {
s += '\t\t\t\t'+i2b2.h.Escape(lvd.ValueLow)+' and '+i2b2.h.Escape(lvd.ValueHigh)+'\n';
} else {
s += '\t\t\t\t'+i2b2.h.Escape(lvd.Value)+'\n';
}
}
break;
case "":
break;
}
s += '\t\t\t\n';
return s;
}
};
