webclient.js-i2b2.cells.ONT.i2b2_msgs.js Maven / Gradle / Ivy

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Standalone service to to run the AKTIN broker and aggregator together with an i2b2 query frontend.
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/**
 * @projectDescription	Messages used by the ONT cell communicator object.
 * @inherits 	i2b2.ONT.cfg
 * @namespace	i2b2.ONT.cfg.msgs
 * @author		Nick Benik, Griffin Weber MD PhD
 * @version 	1.3
 * ----------------------------------------------------------------------------------------
 * updated 9-15-08: RC4 launch [Nick Benik] 
 */


// create the communicator Object
i2b2.ONT.ajax = i2b2.hive.communicatorFactory("ONT");
i2b2.ONT.cfg.msgs = {};
i2b2.ONT.cfg.parsers = {};
i2b2.ONT.cfg.parsers.ExtractConcepts = function(){
	if (!this.error) {
		this.model = [];		
		// extract records from XML msg
		var c = this.refXML.getElementsByTagName('concept');
		for(var i=0; i<1*c.length; i++) {
			var o = new Object;
			o.xmlOrig = c[i];
			o.name = i2b2.h.getXNodeVal(c[i],'name');
			o.hasChildren = i2b2.h.getXNodeVal(c[i],'visualattributes');
			if(typeof o.hasChildren !== "undefined")
				o.hasChildren = i2b2.h.getXNodeVal(c[i],'visualattributes').substring(0,2);
			o.level = i2b2.h.getXNodeVal(c[i],'level');
			o.key = i2b2.h.getXNodeVal(c[i],'key');
			o.tooltip = i2b2.h.getXNodeVal(c[i],'tooltip');
			o.synonym = i2b2.h.getXNodeVal(c[i],'synonym_cd');
			o.visual_attributes = i2b2.h.getXNodeVal(c[i],'visualattributes');
			o.totalnum = i2b2.h.getXNodeVal(c[i],'totalnum');
			o.basecode = i2b2.h.getXNodeVal(c[i],'basecode');;
			o.fact_table_column = i2b2.h.getXNodeVal(c[i],'facttablecolumn');
			o.table_name = i2b2.h.getXNodeVal(c[i],'tablename');
			o.column_name = i2b2.h.getXNodeVal(c[i],'columnname');
			o.column_datatype = i2b2.h.getXNodeVal(c[i],'columndatatype');
			o.operator = i2b2.h.getXNodeVal(c[i],'operator');
			o.dim_code = i2b2.h.getXNodeVal(c[i],'dimcode');
			o.protected_access = i2b2.h.getXNodeVal(c[i],'protected_access');
			// encapsulate the data node into SDX package
			var sdxDataPack = i2b2.sdx.Master.EncapsulateData('CONCPT',o);
			// save extracted info
			this.model.push(sdxDataPack);
		}
	} else {
		this.model = false;
		console.error("[ExtractConcepts] Could not parse() data!");
	}
	return this;
};


// ================================================================================================== //
i2b2.ONT.cfg.msgs.GetChildConcepts = '\n'+
'\n'+
'    \n'+
'        {{{proxy_info}}}'+
'        1.1\n'+
'        2.4\n'+
'        \n'+
'            i2b2 Ontology \n'+
'            {{{version}}}\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        \n'+
'            Ontology Cell\n'+
'            {{{version}}}\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        {{{header_msg_datetime}}}\n'+
'		\n'+
'			{{{sec_domain}}}\n'+
'			{{{sec_user}}}\n'+
'			{{{sec_pass_node}}}\n'+
'		\n'+
'        \n'+
'            {{{header_msg_id}}}\n'+
'            0\n'+
'        \n'+
'        \n'+
'            P\n'+
'            I\n'+
'        \n'+
'        AL\n'+
'        AL\n'+
'        US\n'+
'        {{{sec_project}}}\n'+
'    \n'+
'    \n'+
'        {{{result_wait_time}}}000\n'+
'    \n'+
'    \n'+
'        \n'+
'            {{{concept_key_value}}}\n'+
'        \n'+
'    \n'+
'';
i2b2.ONT.ajax._addFunctionCall(	"GetChildConcepts",
								"{{{URL}}}getChildren",
								i2b2.ONT.cfg.msgs.GetChildConcepts,
								null,
								i2b2.ONT.cfg.parsers.ExtractConcepts);




// ================================================================================================== //
i2b2.ONT.cfg.msgs.GetChildModifiers = '\n'+
'\n'+
'    \n'+
'        {{{proxy_info}}}'+
'        1.1\n'+
'        2.4\n'+
'        \n'+
'            i2b2 Ontology \n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        \n'+
'            Ontology Cell\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        {{{header_msg_datetime}}}\n'+
'		\n'+
'			{{{sec_domain}}}\n'+
'			{{{sec_user}}}\n'+
'			{{{sec_pass_node}}}\n'+
'		\n'+
'        \n'+
'            {{{header_msg_id}}}\n'+
'            0\n'+
'        \n'+
'        \n'+
'            P\n'+
'            I\n'+
'        \n'+
'        AL\n'+
'        AL\n'+
'        US\n'+
'        {{{sec_project}}}\n'+
'    \n'+
'    \n'+
'        {{{result_wait_time}}}000\n'+
'    \n'+
'    \n'+
'        \n'+
'            {{{modifier_key_value}}}\n'+
'			{{{modifier_applied_path}}}\n'+
'			{{{modifier_applied_concept}}}\n'+
'        \n'+
'    \n'+
'';
i2b2.ONT.ajax._addFunctionCall(	"GetChildModifiers",
								"{{{URL}}}getModifierChildren",
								i2b2.ONT.cfg.msgs.GetChildModifiers,
								null,
								i2b2.ONT.cfg.parsers.GetModifiers);





// ================================================================================================== //
i2b2.ONT.cfg.msgs.GetCategories = '\n'+
'\n'+
'    \n'+
'        {{{proxy_info}}}\n'+
'        1.1\n'+
'        2.4\n'+
'        \n'+
'            i2b2 Ontology\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        \n'+
'            Ontology Cell\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        {{{header_msg_datetime}}}\n'+
'		\n'+
'			{{{sec_domain}}}\n'+
'			{{{sec_user}}}\n'+
'			{{{sec_pass_node}}}\n'+
'		\n'+
'        \n'+
'            {{{header_msg_id}}}\n'+
'            0\n'+
'        \n'+
'        \n'+
'            P\n'+
'            I\n'+
'        \n'+
'        AL\n'+
'        AL\n'+
'        US\n'+
'        {{{sec_project}}}\n'+
'    \n'+
'    \n'+
'        {{{result_wait_time}}}000\n'+
'    \n'+
'    \n'+
'        \n'+
'    \n'+
'';
/*
i2b2.ONT.cfg.parsers.GetCategories = function(){
	if (!this.error) {
		this.model = [];		
		// extract records from XML msg
		var c = this.refXML.getElementsByTagName('concept');
		for(var i=0; i<1*c.length; i++) {
			var o = new Object;
			o.xmlOrig = c[i];
			o.level = i2b2.h.getXNodeVal(c[i],'level');
			o.key = i2b2.h.getXNodeVal(c[i],'key');
			o.name = i2b2.h.getXNodeVal(c[i],'name');
			o.total_num = i2b2.h.getXNodeVal(c[i],'totalnum');
			// save extracted info
			this.model.push(0);
		}
	} else {
		this.model = false;
		console.error("[GetCategories] Could not parse() data!");
	}
	return this;
};
*/
i2b2.ONT.ajax._addFunctionCall(	"GetCategories",
								"{{{URL}}}getCategories",
								i2b2.ONT.cfg.msgs.GetCategories,
								null,
								i2b2.ONT.cfg.parsers.ExtractConcepts);


// ================================================================================================== //

i2b2.ONT.cfg.msgs.GetModifiers = '\n'+
'\n'+
'    \n'+
'        {{{proxy_info}}}\n'+
'        1.1\n'+
'        2.4\n'+
'        \n'+
'            i2b2 Ontology\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        \n'+
'            Ontology Cell\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        {{{header_msg_datetime}}}\n'+
'		\n'+
'			{{{sec_domain}}}\n'+
'			{{{sec_user}}}\n'+
'			{{{sec_pass_node}}}\n'+
'		\n'+
'       \n'+
'           {{{header_msg_id}}}\n'+
'           0\n'+
'       \n'+
'       \n'+
'           P\n'+
'           I\n'+
'       \n'+
'       AL\n'+
'       AL\n'+
'       US\n'+
'       {{{sec_project}}}\n'+
'   \n'+
'   \n'+
'       {{{result_wait_time}}}000\n'+
'   \n'+
'   \n'+
'         \n'+
'            {{{concept_key_value}}} \n'+
'        \n'+
'   \n'+
'';
i2b2.ONT.cfg.parsers.GetModifiers = function(){
	if (!this.error) {
		this.model = [];		
		// extract records from XML msg
		var c = this.refXML.getElementsByTagName('modifier');
		for(var i=0; i<1*c.length; i++) {
			var o = new Object;
			o.xmlOrig = c[i];
			o.level = i2b2.h.getXNodeVal(c[i],'level');
			o.basecode = i2b2.h.getXNodeVal(c[i],'basecode');
			o.name = i2b2.h.getXNodeVal(c[i],'name');
			o.total_num = i2b2.h.getXNodeVal(c[i],'totalnum');
			// save extracted info
			this.model.push(o);
		}
	} else {
		this.model = false;
		console.error("[GetModifiers] Could not parse() data!");
		return null;
	}
	return this;
};
i2b2.ONT.ajax._addFunctionCall(	"GetModifiers",
								"{{{URL}}}getModifiers",
								i2b2.ONT.cfg.msgs.GetModifiers,
								null,
								i2b2.ONT.cfg.parsers.GetModifiers);


// ================================================================================================== //

i2b2.ONT.cfg.msgs.GetSchemes = '\n'+
'\n'+
'    \n'+
'        {{{proxy_info}}}\n'+
'        1.1\n'+
'        2.4\n'+
'        \n'+
'            i2b2 Ontology\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        \n'+
'            Ontology Cell\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        {{{header_msg_datetime}}}\n'+
'		\n'+
'			{{{sec_domain}}}\n'+
'			{{{sec_user}}}\n'+
'			{{{sec_pass_node}}}\n'+
'		\n'+
'       \n'+
'           {{{header_msg_id}}}\n'+
'           0\n'+
'       \n'+
'       \n'+
'           P\n'+
'           I\n'+
'       \n'+
'       AL\n'+
'       AL\n'+
'       US\n'+
'       {{{sec_project}}}\n'+
'   \n'+
'   \n'+
'       {{{result_wait_time}}}000\n'+
'   \n'+
'   \n'+
'       \n'+
'   \n'+
'';
i2b2.ONT.cfg.parsers.GetSchemes = function(){
	if (!this.error) {
		this.model = [];		
		// extract records from XML msg
		var c = this.refXML.getElementsByTagName('concept');
		for(var i=0; i<1*c.length; i++) {
			var o = new Object;
			o.xmlOrig = c[i];
			o.level = i2b2.h.getXNodeVal(c[i],'level');
			o.key = i2b2.h.getXNodeVal(c[i],'key');
			o.name = i2b2.h.getXNodeVal(c[i],'name');
			o.total_num = i2b2.h.getXNodeVal(c[i],'totalnum');
			// save extracted info
			this.model.push(o);
		}
	} else {
		this.model = false;
		console.error("[GetSchemes] Could not parse() data!");
	}
	return this;
};
i2b2.ONT.ajax._addFunctionCall(	"GetSchemes",
								"{{{URL}}}getSchemes",
								i2b2.ONT.cfg.msgs.GetSchemes,
								null,
								i2b2.ONT.cfg.parsers.GetSchemes);


// ================================================================================================== //
i2b2.ONT.cfg.msgs.GetNameInfo = '\n'+
'\n'+
'    \n'+
'        {{{proxy_info}}}\n'+
'        1.1\n'+
'        2.4\n'+
'        \n'+
'            i2b2 Ontology\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        \n'+
'            Ontology Cell\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        {{{header_msg_datetime}}}\n'+
'		\n'+
'			{{{sec_domain}}}\n'+
'			{{{sec_user}}}\n'+
'			{{{sec_pass_node}}}\n'+
'		\n'+
'        \n'+
'            {{{header_msg_id}}}\n'+
'            0\n'+
'        \n'+
'        \n'+
'            P\n'+
'            I\n'+
'        \n'+
'        AL\n'+
'        AL\n'+
'        US\n'+
'        {{{sec_project}}}\n'+
'    \n'+
'    \n'+
'        {{{result_wait_time}}}000\n'+
'    \n'+
'    \n'+
'        \n'+
'            {{{ont_search_string}}}\n'+
'        \n'+
'    \n'+
'';
i2b2.ONT.ajax._addFunctionCall(	"GetNameInfo",
								"{{{URL}}}getNameInfo", 
								i2b2.ONT.cfg.msgs.GetNameInfo,
								null,
								i2b2.ONT.cfg.parsers.ExtractConcepts);


// ================================================================================================== //
i2b2.ONT.cfg.msgs.GetModifierCodeInfo = '\n'+
'\n'+
'    \n'+
'        {{{proxy_info}}}\n'+
'        1.1\n'+
'        2.4\n'+
'        \n'+
'            i2b2 Ontology\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        \n'+
'            Ontology Cell\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        {{{header_msg_datetime}}}\n'+
'		\n'+
'			{{{sec_domain}}}\n'+
'			{{{sec_user}}}\n'+
'			{{{sec_pass_node}}}\n'+
'		\n'+
'        \n'+
'            {{{header_msg_id}}}\n'+
'            0\n'+
'        \n'+
'        \n'+
'            P\n'+
'            I\n'+
'        \n'+
'        AL\n'+
'        AL\n'+
'        US\n'+
'        {{{sec_project}}}\n'+
'    \n'+
'    \n'+
'        {{{result_wait_time}}}000\n'+
'    \n'+
'    \n'+
'        \n'+
'			{{{modifier_key_value}}}\n'+
'            {{{ont_search_string}}}\n'+
'        \n'+
'    \n'+
'';
i2b2.ONT.ajax._addFunctionCall(	"GetModifierCodeInfo",
								"{{{URL}}}getModifierCodeInfo", 
								i2b2.ONT.cfg.msgs.GetModifierCodeInfo,
								null,
								i2b2.ONT.cfg.parsers.GetModifiers);

// ================================================================================================== //
i2b2.ONT.cfg.msgs.GetModifierNameInfo = '\n'+
'\n'+
'    \n'+
'        {{{proxy_info}}}\n'+
'        1.1\n'+
'        2.4\n'+
'        \n'+
'            i2b2 Ontology\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        \n'+
'            Ontology Cell\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        {{{header_msg_datetime}}}\n'+
'		\n'+
'			{{{sec_domain}}}\n'+
'			{{{sec_user}}}\n'+
'			{{{sec_pass_node}}}\n'+
'		\n'+
'        \n'+
'            {{{header_msg_id}}}\n'+
'            0\n'+
'        \n'+
'        \n'+
'            P\n'+
'            I\n'+
'        \n'+
'        AL\n'+
'        AL\n'+
'        US\n'+
'        {{{sec_project}}}\n'+
'    \n'+
'    \n'+
'        {{{result_wait_time}}}000\n'+
'    \n'+
'    \n'+
'        \n'+
'			{{{modifier_key_value}}}\n'+
'            {{{ont_search_string}}}\n'+
'        \n'+
'    \n'+
'';
i2b2.ONT.ajax._addFunctionCall(	"GetModifierNameInfo",
								"{{{URL}}}getModifierNameInfo", 
								i2b2.ONT.cfg.msgs.GetModifierNameInfo,
								null,
								i2b2.ONT.cfg.parsers.GetModifiers);


// ================================================================================================== //
i2b2.ONT.cfg.msgs.GetCodeInfo = '\n'+
'\n'+
'    \n'+
'        {{{proxy_info}}}\n'+
'        1.1\n'+
'        2.4\n'+
'        \n'+
'            i2b2 Ontology\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        \n'+
'            Ontology Cell\n'+
'            ' + i2b2.ClientVersion + '\n'+
'        \n'+
'        \n'+
'            i2b2 Hive\n'+
'        \n'+
'        {{{header_msg_datetime}}}\n'+
'        \n'+
'            {{{sec_domain}}}\n'+
'            {{{sec_user}}}\n'+
'            {{{sec_pass_node}}}\n'+
'        \n'+
'        \n'+
'            {{{header_msg_id}}}\n'+
'            0\n'+
'        \n'+
'        \n'+
'            P\n'+
'            I\n'+
'        \n'+
'        AL\n'+
'        AL\n'+
'        US\n'+
'        {{{sec_project}}}\n'+
'    \n'+
'    \n'+
'        {{{result_wait_time}}}000\n'+
'    \n'+
'    \n'+
'        \n'+
'            {{{ont_search_coding}}}{{{ont_search_string}}}\n'+
'        \n'+
'    \n'+
'';
i2b2.ONT.ajax._addFunctionCall(	"GetCodeInfo",
								"{{{URL}}}getCodeInfo", 
								i2b2.ONT.cfg.msgs.GetCodeInfo, 
								null, 
								i2b2.ONT.cfg.parsers.ExtractConcepts);


// ================================================================================================== //=
i2b2.ONT.cfg.msgs.GetTermInfo = '\n'+
'\n'+
'	\n'+
'		{{{proxy_info}}}\n'+
'		1.1\n'+
'		2.4\n'+
'		\n'+
'			i2b2 Ontology\n'+
'			' + i2b2.ClientVersion + '\n'+
'		\n'+
'		\n'+
'			i2b2 Hive\n'+
'		\n'+
'		\n'+
'			Ontology Cell\n'+
'			' + i2b2.ClientVersion + '\n'+
'		\n'+
'		\n'+
'			i2b2 Hive\n'+
'		\n'+
'		{{{header_msg_datetime}}}\n'+
'		\n'+
'			{{{sec_domain}}}\n'+
'			{{{sec_user}}}\n'+
'			{{{sec_pass_node}}}\n'+
'		\n'+
'		\n'+
'			{{{header_msg_id}}}\n'+
'			0\n'+
'		\n'+
'		\n'+
'			P\n'+
'			I\n'+
'		\n'+
'		AL\n'+
'		AL\n'+
'		US\n'+
'		{{{sec_project}}}\n'+
'	\n'+
'	\n'+
'		{{{result_wait_time}}}000\n'+
'	\n'+
'	\n'+
'		\n'+
'			{{{concept_key_value}}}\n'+
'		\n'+
'	\n'+
'';
i2b2.ONT.ajax._addFunctionCall(	"GetTermInfo",
								"{{{URL}}}getTermInfo",
								i2b2.ONT.cfg.msgs.GetTermInfo,
								null,
								i2b2.ONT.cfg.parsers.ExtractConcepts);

// ================================================================================================== //=
i2b2.ONT.cfg.msgs.GetModifierInfo = '\n'+
'\n'+
'	\n'+
'		{{{proxy_info}}}\n'+
'		1.1\n'+
'		2.4\n'+
'		\n'+
'			i2b2 Ontology\n'+
'			' + i2b2.ClientVersion + '\n'+
'		\n'+
'		\n'+
'			i2b2 Hive\n'+
'		\n'+
'		\n'+
'			Ontology Cell\n'+
'			' + i2b2.ClientVersion + '\n'+
'		\n'+
'		\n'+
'			i2b2 Hive\n'+
'		\n'+
'		{{{header_msg_datetime}}}\n'+
'		\n'+
'			{{{sec_domain}}}\n'+
'			{{{sec_user}}}\n'+
'			{{{sec_pass_node}}}\n'+
'		\n'+
'		\n'+
'			{{{header_msg_id}}}\n'+
'			0\n'+
'		\n'+
'		\n'+
'			P\n'+
'			I\n'+
'		\n'+
'		AL\n'+
'		AL\n'+
'		US\n'+
'		{{{sec_project}}}\n'+
'	\n'+
'	\n'+
'		{{{result_wait_time}}}000\n'+
'	\n'+
'	\n'+
'		\n'+
'			{{{modifier_key_value}}}\n'+
'			{{{modifier_applied_path}}}\n'+
'		\n'+
'	\n'+
'';
i2b2.ONT.ajax._addFunctionCall(	"GetModifierInfo",
								"{{{URL}}}getModifierInfo",
								i2b2.ONT.cfg.msgs.GetModifierInfo,
								null,
								i2b2.ONT.cfg.parsers.GetModifiers);