webclient.js-i2b2.cells.plugins.community.WISEsearcher.WISEsearcher_ctrlr.js Maven / Gradle / Ivy
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Standalone service to to run the AKTIN broker and aggregator
together with an i2b2 query frontend.
The newest version!
/*====================================================================================================================
* @projectDescription Workplace Items Sharing Enhancement - Searcher
* (Tool for finding & listing all items in the Workplace that contain specified search terms in their annotations or names).
* @inherits i2b2
* @namespace i2b2.WISEsearcher
* @author S. Wayne Chan,
* Biomedical Research Informatics Development Group (BRIDG) and Biomedical Research Informatics Consulting & Knowledge Service (BRICKS),
* Div. of Health Informatics and Implementation Science (HIIS), Dept. of Quantitative Health Sciences (QHS),
* University of Massachusetts Medical School (UMMS), Worcester, MA
* [email protected]
* @version 1.1 (for i2b2 v1.3 - v1.6.0.2)
* @acknowledgement This module leveraged off
* - the general construct / format /style / template used in the i2b2 web client plugin examples by N. Benik & G. Weber
* - the XLS export feature of the ExportXLS plugin by M. Bucalo, Universita' di Pavia
* ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
* @copyright Copyright 2011, 2012 University of Massachusetts Medical School.
* @license/disclaimer This file is part of the WISE-Searcher plugin for i2b2 webclient.
*
* WISE-Searcher plugin for i2b2 webclient is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the
* Free Software Foundation , either version 3 of the License, or (at your option) any later version.
*
* WISE-Searcher plugin for the i2b2 webclient is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with WISE-Searcher plugin for the i2b2 webclient. If not, see 
";
return "query";
} else if ("PATIENT_COLL" == code) {
i2b2.WISEsearcher.model.WIicons[i] = "
";
return "patient set";
} else if ("FOLDER" == code) {
i2b2.WISEsearcher.model.WIicons[i] = "
";
return "folder";
} else if ("PATIENT" == code) {
i2b2.WISEsearcher.model.WIicons[i] = "
";
return "patient";
} else if ("CONCEPT" == code) {
i2b2.WISEsearcher.model.WIicons[i] = "
";
return "concept";
} else if ("PATIENT_COUNT_XML" == code) {
i2b2.WISEsearcher.model.WIicons[i] = "
";
return "patient count";
} else if ("QUERY_DEFINITION" == code) {
i2b2.WISEsearcher.model.WIicons[i] = "
";
return "query definition";
} else if ("GROUP_TEMPLATE" == code) {
i2b2.WISEsearcher.model.WIicons[i] = "
";
return "group template";
} else {
i2b2.WISEsearcher.model.WIicons[i] = "";
return code;
}
};
// -------------------------------------------------------------------------------------------------------------------
// This method finds the path of a Workplace item
// -------------------------------------------------------------------------------------------------------------------
i2b2.WISEsearcher.findPath = function(s) {
var path = " / ";
for (var i = 0; i < i2b2.WISEsearcher.model.WFindices.length; i ++) {
//alert(".findPath()--\n\ns="+s+"\ni2b2.WISEsearcher.model.WFindices["+i+"]="+i2b2.WISEsearcher.model.WFindices[i]);
if (s == i2b2.WISEsearcher.model.WFindices[i]) {
path = i2b2.WISEsearcher.model.WFpaths[i] + i2b2.WISEsearcher.model.WFnames[i] + path;
}
}
//alert("exiting .findPath()--\n\ns="+s+"\npath="+path);
return path;
};
// -------------------------------------------------------------------------------------------------------------------
// This method determines if a code is for folder or not
// -------------------------------------------------------------------------------------------------------------------
i2b2.WISEsearcher.isFolder = function(code) {
if ("FA" == code) {
return true;
} else {
return false;
}
};
// -------------------------------------------------------------------------------------------------------------------
// This method finds & logs all the Workplace items that matches at least one of the search terms
// -------------------------------------------------------------------------------------------------------------------
i2b2.WISEsearcher.matchOneSearch = function() {
//alert("entered .matchOneSearch()");
var currWImatched = false;
var currTermMatched = false;
var matchedInAnn = false;
var matchedInName = false;
var matchedCount = 0;
//var comma = ", ";
var semicolon = "; ";
var t;
var matchedPos;
var matchedStr1;
var matchedStr2;
var checkExcludes = false;
if (0 < i2b2.WISEsearcher.model.excludes.length) {
checkExcludes = true;
}
//alert("checkExcludes="+checkExcludes);
for (var i = 0; i < i2b2.WISEsearcher.model.WIindices.length; i ++) {
if (checkExcludes && i2b2.WISEsearcher.excludeItem(i)) {
continue;
}
currWImatched = false;
currTermMatched = false;
matchedInAnn = false;
matchedInName = false;
t = "";
//var dbg = "i="+i+",\n ann="+i2b2.WISEsearcher.model.WIorigAnns[i]+",\n name="+i2b2.WISEsearcher.model.WIorigNames[i];
for (var j = 0; j < i2b2.WISEsearcher.model.terms.length; j ++) {
matchedStr1 = "";
matchedPos = i2b2.WISEsearcher.model.WIanns[i].indexOf(i2b2.WISEsearcher.model.terms[j]);
//dbg += ",\n terms["+j+"]="+i2b2.WISEsearcher.model.terms[j]+", ann-matched-pos="+matchedPos;
if (-1 < matchedPos) {
matchedInAnn = true;
currTermMatched = true;
matchedStr1 = i2b2.WISEsearcher.model.WIorigAnns[i].substr(matchedPos, i2b2.WISEsearcher.model.terms[j].length);
}
matchedStr2 = "";
matchedPos = i2b2.WISEsearcher.model.WInames[i].indexOf(i2b2.WISEsearcher.model.terms[j]);
//dbg += ", name-matched-pos="+matchedPos;
if (-1 < matchedPos) {
matchedInName = true;
currTermMatched = true;
matchedStr2 = i2b2.WISEsearcher.model.WIorigNames[i].substr(matchedPos, i2b2.WISEsearcher.model.terms[j].length);
}
if (currTermMatched) {
//alert("matchedStr1=" + matchedStr1 + "\nmatchedStr2=" + matchedStr2);
if (matchedStr1 != matchedStr2) {
if ("" == matchedStr1) {
matchedStr1 = matchedStr2;
} else if ("" != matchedStr2) {
//matchedStr1 += comma + matchedStr2;
matchedStr1 += semicolon + matchedStr2;
}
}
if (currWImatched) {
if ("" != matchedStr1) {
//t += comma + matchedStr1;
t += semicolon + matchedStr1;
}
} else {
t += matchedStr1;
currWImatched = true;
}
currTermMatched = false; // reset it
}
}
//alert("t=" + t);
//alert(dbg);
if (currWImatched) {
i2b2.WISEsearcher.saveMatched(matchedCount, i, t, matchedInAnn, matchedInName);
matchedCount ++;
}
}
//alert("exiting .matchOneSearch()--\n\nmatchedCount="+matchedCount);
i2b2.WISEsearcher.tabulateResult("1");
};
// -------------------------------------------------------------------------------------------------------------------
// This method saves the data of a matched item (for result tabulation later)
// -------------------------------------------------------------------------------------------------------------------
i2b2.WISEsearcher.saveMatched = function(matchedCount, i, matchedTerms, annMatch, nameMatch) {
var c = ", ";
var s = "";
i2b2.WISEsearcher.model.rowIcons[matchedCount] = s + i2b2.WISEsearcher.model.WIicons[i];
i2b2.WISEsearcher.model.rows[matchedCount] = s + i2b2.WISEsearcher.model.WIorigNames[i] + s + i2b2.WISEsearcher.model.WItypes[i] + s + i2b2.WISEsearcher.model.WIpaths[i];
i2b2.WISEsearcher.model.rowsCsv[matchedCount] = c + i2b2.WISEsearcher.model.WIorigNames[i] + c + i2b2.WISEsearcher.model.WItypes[i] +
c + i2b2.WISEsearcher.model.WIpaths[i];
if ("" != matchedTerms) {
i2b2.WISEsearcher.model.rows[matchedCount] += s + matchedTerms;
i2b2.WISEsearcher.model.rowsCsv[matchedCount] += c + matchedTerms;
}
i2b2.WISEsearcher.model.rows[matchedCount] += s + i2b2.WISEsearcher.yesOrBlank(annMatch) + s + i2b2.WISEsearcher.yesOrBlank(nameMatch) + " ";
i2b2.WISEsearcher.model.rowsCsv[matchedCount] += c + i2b2.WISEsearcher.yesOrBlankCsv(annMatch) + c + i2b2.WISEsearcher.yesOrBlankCsv(nameMatch);
i2b2.WISEsearcher.model.rowPaths[matchedCount] = i2b2.WISEsearcher.model.WIpaths[i]; // for sorting by the paths & names only
};
// -------------------------------------------------------------------------------------------------------------------
// This method maps 'YES' / ' ' to true / false, for result tabulation
// -------------------------------------------------------------------------------------------------------------------
i2b2.WISEsearcher.yesOrBlank = function(t) {
if (t) {
//return "YES";
return "YES";
} else {
//return " ";
return " ";
}
};
// -------------------------------------------------------------------------------------------------------------------
// This method maps 'YES' / '' to true / false, for result tabulation
// -------------------------------------------------------------------------------------------------------------------
i2b2.WISEsearcher.yesOrBlankCsv = function(t) {
if (t) {
return "YES";
} else {
return " ";
}
};
// -------------------------------------------------------------------------------------------------------------------
// This method finds & logs all the Workplace items that matches all the search terms
// -------------------------------------------------------------------------------------------------------------------
i2b2.WISEsearcher.matchAllSearch = function() {
//alert("entered .matchAllSearch()");
var currWImatched = true;
var currTermMatched = false;
var matchedInAnn = true;
var matchedInName = true;
var matchedCount = 0;
//var comma = ", ";
//var t;
var matchedPos;
//var matchedStr1;
//var matchedStr2;
var checkExcludes = false;
if (0 < i2b2.WISEsearcher.model.excludes.length) {
checkExcludes = true;
}
for (var i = 0; i < i2b2.WISEsearcher.model.WIindices.length; i ++) {
if (checkExcludes && i2b2.WISEsearcher.excludeItem(i)) {
continue;
}
currWImatched = true;
currTermMatched = false;
matchedInAnn = true;
matchedInName = true;
//t = "";
//var dbg = "i="+i+",\n ann="+i2b2.WISEsearcher.model.WIorigAnns[i]+",\n name="+i2b2.WISEsearcher.model.WIorigNames[i];
for (var j = 0; j < i2b2.WISEsearcher.model.terms.length; j ++) {
if (matchedInAnn) {
//matchedStr1 = "";
matchedPos = i2b2.WISEsearcher.model.WIanns[i].indexOf(i2b2.WISEsearcher.model.terms[j]);
//dbg += ",\n terms["+j+"]="+i2b2.WISEsearcher.model.terms[j]+", ann-matched-pos="+matchedPos;
if (-1 < matchedPos) {
currTermMatched = true;
//matchedStr1 = i2b2.WISEsearcher.model.WIorigAnns[i].substr(matchedPos, i2b2.WISEsearcher.model.terms[j].length);
} else {
matchedInAnn = false; // it only takes 1 miss to stop checking against annotation
}
}
if (matchedInName) {
//matchedStr2 = "";
matchedPos = i2b2.WISEsearcher.model.WInames[i].indexOf(i2b2.WISEsearcher.model.terms[j]);
//dbg += ", name-matched-pos="+matchedPos;
if (-1 < matchedPos) {
currTermMatched = true;
//matchedStr2 = i2b2.WISEsearcher.model.WIorigNames[i].substr(matchedPos, i2b2.WISEsearcher.model.terms[j].length);
} else {
matchedInName = false; // it only takes 1 miss to stop checking against Name
}
}
if (currTermMatched) {
//if (matchedStr1 != matchedStr2) {
// if ("" == matchedStr1) {
// matchedStr1 = matchedStr2;
// } else if ("" != matchedStr2) {
// matchedStr1 += comma + matchedStr2;
// }
//}
//if ("" == t) {
// t += matchedStr1;
//} else {
// t += comma + matchedStr1;
//}
currTermMatched = false; // reset it for next term
} else {
currWImatched = false; // it only take 1 miss to disqualify current item
break;
}
}
//alert(dbg);
if (currWImatched) {
//i2b2.WISEsearcher.saveMatched(matchedCount, i, t, matchedInAnn, matchedInName);
i2b2.WISEsearcher.saveMatched(matchedCount, i, "", matchedInAnn, matchedInName);
matchedCount ++;
}
}
//alert("exiting .matchAllSearch()--\n\nmatchedCount="+matchedCount);
//i2b2.WISEsearcher.tabulateResult("1");
i2b2.WISEsearcher.tabulateResult("a");
};
// -------------------------------------------------------------------------------------------------------------------
// This method returns T / F if an item is to be exluded or not
// -------------------------------------------------------------------------------------------------------------------
i2b2.WISEsearcher.excludeItem = function(index) {
//alert("entered .excludeItem("+index+")");
var excludesCount = i2b2.WISEsearcher.model.excludes.length;
var matchedExcludes = 0;
var excludeByAny;
if ("1" == i2b2.WISEsearcher.model.exclude) {
excludeByAny = true;
} else {
excludeByAny = false;
}
//var dbg = "excludesCount="+excludesCount+"\nexcludeByAny="+excludeByAny+"\nindex="+index+"\n\nanns="+i2b2.WISEsearcher.model.WIorigAnns[index]+
// "\nname="+i2b2.WISEsearcher.model.WIorigNames[index]+"\n\n";
for (var j = 0; j < excludesCount; j ++) {
if ((-1 < i2b2.WISEsearcher.model.WIanns[index].indexOf(i2b2.WISEsearcher.model.excludes[j])) ||
(-1 < i2b2.WISEsearcher.model.WInames[index].indexOf(i2b2.WISEsearcher.model.excludes[j]))) {
if (excludeByAny) {
//alert(dbg+"\n.excludeItem("+index+") rtns true,\n matched exlude-item="+i2b2.WISEsearcher.model.excludes[j]);
return true;
} else {
//dbg += i2b2.WISEsearcher.model.excludes[j]+": matched\n";
matchedExcludes ++;
continue;
}
} else {
if (!excludeByAny) { // i.e. exclude only when all excludes are present
//alert(dbg+"\n.excludeItem("+index+") rtns false,\n no-match on exlude-item="+i2b2.WISEsearcher.model.excludes[j]);
return false; // don't exclude current term since at least this 1 exclude is not there
}
}
}
// at this point, last sanity check 7 return appropriate verdict
if (excludeByAny) {
if (0 < matchedExcludes) {
//alert(dbg+"\n.excludeItem("+index+") rtns true\n matchedExcludes="+matchedExcludes);
return true;
} else {
//alert(dbg+"\n.excludeItem("+index+") rtns false\n matchedExcludes="+matchedExcludes);
return false;
}
} else {
if (excludesCount == matchedExcludes) {
//alert(dbg+"\n.excludeItem("+index+") rtns true\n matchedExcludes="+matchedExcludes);
return true;
} else {
//alert(dbg+"\n.excludeItem("+index+") rtns false\n matchedExcludes="+matchedExcludes);
return false;
}
}
};
// -------------------------------------------------------------------------------------------------------------------
// This method tabulates & displays the search result
// -------------------------------------------------------------------------------------------------------------------
i2b2.WISEsearcher.tabulateResult = function(style) {
//alert("entered .tabulateResult('"+style+"')--\n\nitems processed = "+i2b2.WISEsearcher.model.WIindices.length+"\nmatched items = "+i2b2.WISEsearcher.model.matchedWInames.length);
var ok = i2b2.WISEsearcher.sortByPaths();
// set up the tables, their captions & headers
var ti = "Workplace Items matching the following criteria:"; // no id needed for the icon table
var tx = "Workplace Items matching the following criteria:"; // id needed for XLS table
var tc = "\r\n Workplace Items matching the following criteria:"; // id needed for CSV table
var si = " Workplace Item Type Path "; // extra column for icon (for the icon'd table)
var sx = " Workplace Item Type Path "; // no icon column for XLS table
var sc = "#, Workplace Item, Type, Path, "; // no icon column for CSV table
var r = "Annotation Match Name Match ";
var rc = "Annotation Match, Name Match";
var z;
var zc;
var searchTerms = i2b2.WISEsearcher.model.allTerms.replace(/,/g, ";");
var skipTerms = i2b2.WISEsearcher.model.allExcludes.replace(/,/g, ";");
if ("o" == i2b2.WISEsearcher.model.Case) {
z = " case-sensitive
Search terms: '" + i2b2.WISEsearcher.model.allTerms;
zc = " case-sensitive\r\n Search terms: '" + searchTerms;
} else { // "i"
z = " case-insensitive
Search terms: '" + i2b2.WISEsearcher.model.allTerms;
zc = " case-insensitive\r\n Search terms: '" + searchTerms;
}
if ("a" == style) {
ti += z + "';
Match option: 'Match all the specified terms.'";
tx += z + "';
Match option: 'Match all the specified terms.'";
tc += zc + "';\r\n Match option: 'Match all the specified terms.'";
} else {
ti += z + "';
Match option: 'Match at least one of the specified terms.'";
tx += z + "';
Match option: 'Match at least one of the specified terms.'";
tc += zc + "';\r\n Match option: 'Match at least one of the specified terms.'";
}
if (0 < i2b2.WISEsearcher.model.excludes.length) {
z = "
Exclude terms: '" + skipTerms + "';
Exclude option: 'Exclude any item that contains ";
zc = "\r\n Exclude terms: '" + skipTerms + "';\r\n Exclude option: 'Exclude any item that contains ";
if ("a" == style) {
ti += z + "all the specified terms.'" + si + r;
tx += z + "all the specified terms.'
" + sx + r; // extra line for XLS table
tc += zc + "all the specified terms.'\r\n ===========================\r\n\r\n" + sc + rc; // extra line for CSV table
} else {
ti += z + "any of the specified terms.'" + si + "Matched Terms " + r;
tx += z + "any of the specified terms.'
" + sx + "Matched Terms " + r; // extra line for XLS table
tc += zc + "any of the specified terms.'\r\n ===========================\r\n\r\n" + sc + "Matched Terms, " + rc; // extra line for CSV table
}
} else {
if ("a" == style) {
ti += "
Exclude terms: NONE" + si + r;
tx += "
Exclude terms: NONE
" + sx + r; // extra space for XLS table
tc += "\r\n Exclude terms: NONE\r\n ===========================\r\n\r\n" + sc + rc; // extra space for CSV table
} else {
ti += "
Exclude terms: NONE" + si + "Matched Terms " + r;
tx += "
Exclude terms: NONE
" + sx + "Matched Terms " + r; // extra space for XLS table
tc += "\r\n Exclude terms: NONE\r\n ===========================\r\n\r\n" + sc + "Matched Terms, " + rc; // extra space for CSV table
}
}
// add the rows
var j;
for (var i = 0; i < i2b2.WISEsearcher.model.rows.length; i ++) {
j = i + 1;
tc += "\r\n" + j + i2b2.WISEsearcher.model.rowsCsv[i]; // no icon column for CSV table
j = "" + j;
ti += j + i2b2.WISEsearcher.model.rowIcons[i] + i2b2.WISEsearcher.model.rows[i]; // extra column for icon (for the icon'd table)
tx += j + i2b2.WISEsearcher.model.rows[i]; // no icon column for XLS table
}
j = "
";
ti += j;
tx += j;
tc += "
"; // the ".." prefix & "..
" postfix are needed for the jquery to work its magic, they are then stripped away in Save2Csv.php
i2b2.WISEsearcher.model.csv = tc;
$$("DIV#WISEsearcher-mainDiv DIV#WISEsearcher-TABS DIV.results-finished")[0].show();
$$("DIV#WISEsearcher-mainDiv DIV#WISEsearcher-TABS DIV.results-export-xls")[0].show();
var resultShow = $$("DIV#WISEsearcher-mainDiv DIV#results-display")[0];
//Element.select(resultShow, '.results-tabulation .searchResult')[0].innerHTML = '' + t + '
';
resultShow.select('.results-tabulation .searchResult')[0].innerHTML = ti;
resultShow.select('.searchResult-xls')[0].innerHTML = tx;
resultShow.select('.searchResult-xls')[0].hide(); // not for show (for export only) though
resultShow.select('.searchResult-csv')[0].innerHTML = tc;
resultShow.select('.searchResult-csv')[0].hide(); // not for show (for export only) though
i2b2.h.LoadingMask.hide(); // turn off the "LOADING" mask
i2b2.WISEsearcher.SetupSaveData2LocalPhps();
// following not necessary with the introduction of i2b2.WISEsearcher.IEwriteCsvTable
if (navigator.appName == 'Microsoft Internet Explorer') {
//resultShow.select('.results-warn')[0].show();
resultShow.select('.results-export-csv-IE')[0].show();
resultShow.select('.results-export-csv')[0].hide();
} else {
//resultShow.select('.results-warn')[0].hide();
resultShow.select('.results-export-csv-IE')[0].hide();
resultShow.select('.results-export-csv')[0].show();
}
resultShow.select('.results-export-csv2')[0].show();
//alert("exiting .tabulateResult('"+style+"')--\n\nt="+t);
};
// -------------------------------------------------------------------------------------------------------------------
// This method writes the csvTable into a file for IE only (since IE won't render the '\r\n' or 'PHP_EOL' correctly)
// -------------------------------------------------------------------------------------------------------------------
i2b2.WISEsearcher.IEwriteCsvTable = function() {
var w = window.open('', 'csvWindow', 'width=100,height=100'); // minimized popup, may be blocked though
// the following line does not actually do anything interesting with the parameter given in current browsers, but really should have.
// Maybe in some browser it will. It does not hurt anyway to give the mime type
w.document.open("csv/csv");
var s = i2b2.WISEsearcher.model.csv.slice("".length); // remove the prefix
s = s.substr(0, s.length - "
".length); // remove the postfix
w.document.write(s);
w.document.close();
//swc20120320 replaced next alert dialog, as it turns out that despite of the ".csv" extension not being displayed in the "Save As" dialog, it is in fact there!
//alert("Writing table to file --\n\nplease note that due to limitation in Internet Explorer (IE), you must enter the file extension '.csv' (no quote), " +
// "after the filename, yourself, before pressing the [Save] button in the \"Save As\" dialog (coming up next):\n\ne.g.\n " +
// "append '.csv' to end of 'i2b2data_WISE-search_20120117-121534'\n to make it 'i2b2data_WISE-search_20120117-121534.csv'\n\nThank you!");
//swc20120321 unfortunately, this alert dialog may result in the "Save As" dialog being hidden under the parent webcleint browser window!
//alert("Exporting file --\n\nin the next dialog, please ignore the 'Save as type:' field content (an Internet Explorer shortcoming), and just click the [Save] button to save the .CSV file");
var t = new Date();
var fn = "i2b2data_WISE-search_" + t.getFullYear() + i2b2.WISEsearcher.getDoubleDigit(1 + t.getMonth()) + i2b2.WISEsearcher.getDoubleDigit(t.getDate()) + "-" +
i2b2.WISEsearcher.getDoubleDigit(t.getHours()) + i2b2.WISEsearcher.getDoubleDigit(t.getMinutes()) + i2b2.WISEsearcher.getDoubleDigit(t.getSeconds()) + ".csv";
w.document.execCommand("SaveAs", true, fn); // only works on IE, which always drop the ".csv" extension!
w.close();
}
// -------------------------------------------------------------------------------------------------------------------
// This method pads a single digit (like '1') into double digit with leading '0' (like '01')
// -------------------------------------------------------------------------------------------------------------------
i2b2.WISEsearcher.getDoubleDigit = function(n) {
var s;
if (n < 10) {
s = "0" + n;
} else {
s = n;
}
return s;
}
// -------------------------------------------------------------------------------------------------------------------
// This method sorts the result rows by the order of the paths of the Workplace items
// -------------------------------------------------------------------------------------------------------------------
i2b2.WISEsearcher.sortByPaths = function() {
var w = i2b2.WISEsearcher.model.rowPaths.slice(0); // clone
var x = i2b2.WISEsearcher.model.rowPaths.slice(0); // clone
x.sort(); // ordered
var avail = [];
var order = [];
var sortedIcons = [];
var sortedRows = [];
var sortedRowsCsv = [];
var i;
var j;
var n = w.length;
// initialize the ref arrays
for (i = 0; i < n; i ++) {
avail[i] = true;
order[i] = i;
}
// determine the orders of each element
for (i = 0; i < n; i ++) {
for (j = 0; j < n; j ++) {
if (avail[j] && w[j] == x[i]) {
avail[j] = false; // remove it from next considerations
order[i] = j;
break;
}
}
}
// re-arrange
for (i = 0; i < n; i ++) {
j = order[i];
sortedIcons[i] = i2b2.WISEsearcher.model.rowIcons[j];
sortedRows[i] = i2b2.WISEsearcher.model.rows[j];
sortedRowsCsv[i] = i2b2.WISEsearcher.model.rowsCsv[j];
}
// clone back sorted arrays to original arrays
i2b2.WISEsearcher.model.rowIcons = sortedIcons.slice(0); // clone
i2b2.WISEsearcher.model.rows = sortedRows.slice(0); // clone
i2b2.WISEsearcher.model.rowsCsv = sortedRowsCsv.slice(0); // clone
return true;
};
//-------------------------------------------------------------------------------------------------------------------
//This method returns the relative-path'd invocation strings of the saving php's
//-------------------------------------------------------------------------------------------------------------------
i2b2.WISEsearcher.SetupSaveData2LocalPhps = function() {
var xls_php = i2b2.PLUGINMGR.ctrlr.main.currentPluginCtrlr.cfg.config.assetDir + "SaveToExcel.php?ext=WISE-search";
var csv_php = i2b2.PLUGINMGR.ctrlr.main.currentPluginCtrlr.cfg.config.assetDir + "Save2Csv.php?ext=WISE-search";
//alert("xls_php='" + xls_php + "'\n\ncsv_php='" + csv_php + "'");
$j("#save2csv").attr("action", csv_php);
$j("#save2xls").attr("action", xls_php);
}
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