uepf.clicy.2.5.0.1.source-code.clij2.xml Maven / Gradle / Ivy
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CLIJ2 bridge to Icy sequences and protocols
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<root description="CLIJ2" name="clij2"> <task name="CLIJ2 filters"> <band name="CLIJ2"> <item classname="plugins.haesleinhuepf.Recorder" priority="top"/> </band> <band name="Filter"> <item classname="plugins.haesleinhuepf.buttons.GaussianBlur2D" priority="top"/> <item classname="plugins.haesleinhuepf.buttons.GaussianBlur3D" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.Mean2DBox" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.Mean3DBox" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.Minimum2DBox" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.Minimum3DBox" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.Maximum2DBox" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.Maximum3DBox" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.LaplaceBox" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.Sobel" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.VoronoiOctagon" priority="med"/> </band> <band name="Background"> <item classname="plugins.haesleinhuepf.buttons.DifferenceOfGaussian2D" priority="top"/> <item classname="plugins.haesleinhuepf.buttons.DifferenceOfGaussian3D" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.TopHatBox" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.BottomHatBox" priority="med"/> </band> </task> <task name="CLIJ2 math"> <band name="CLIJ2"> <item classname="plugins.haesleinhuepf.Recorder" priority="top"/> </band> <band name="Math"> <item classname="plugins.haesleinhuepf.buttons.Absolute" priority="top"/> <item classname="plugins.haesleinhuepf.buttons.AddImagesWeighted" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.AddImageAndScalar" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.DivideImages" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.Invert" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.MultiplyImages" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.EqualizeMeanIntensitiesOfSlices" priority="top"/> <item classname="plugins.haesleinhuepf.buttons.Exponential" priority="top"/> <item classname="plugins.haesleinhuepf.buttons.Power" priority="top"/> <item classname="plugins.haesleinhuepf.buttons.Logarithm" priority="top"/> <item classname="plugins.haesleinhuepf.buttons.EqualizeMeanIntensitiesOfSlices" priority="top"/> </band> <band name="Projections"> <item classname="plugins.haesleinhuepf.buttons.MaximumZProjection" priority="top"/> <item classname="plugins.haesleinhuepf.buttons.MeanZProjection" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.MinimumZProjection" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.StandardDeviationZProjection" priority="med"/> </band> </task> <task name="CLIJ2 transformation / segmentation"> <band name="CLIJ2"> <item classname="plugins.haesleinhuepf.Recorder" priority="top"/> </band> <band name="Transformation"> <item classname="plugins.haesleinhuepf.buttons.AffineTransform2D" priority="top"/> <item classname="plugins.haesleinhuepf.buttons.AffineTransform3D" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.ApplyVectorField2D" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.ApplyVectorField3D" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.Flip2D" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.Flip3D" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.RotateClockwise" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.RotateCounterClockwise" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.Resample" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.TransposeXY" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.TransposeXZ" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.TransposeYZ" priority="med"/> </band> <band name="Binary"> <item classname="plugins.haesleinhuepf.buttons.BinaryAnd" priority="top"/> <item classname="plugins.haesleinhuepf.buttons.BinaryOr" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.BinaryXOr" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.BinaryNot" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.BinarySubtract" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.BinaryEdgeDetection" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.ErodeBox" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.DilateBox" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.ClosingBox" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.OpeningBox" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.Mask" priority="med"/> </band> <band name="Segmentation"> <item classname="plugins.haesleinhuepf.buttons.AutomaticThreshold" priority="top"/> <item classname="plugins.haesleinhuepf.buttons.Threshold" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdDefault" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdOtsu" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdHuang" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdIntermodes" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdIsoData" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdIJ_IsoData" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdLi" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdMaxEntropy" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdMean" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdMinError" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdMinimum" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdMoments" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdPercentile" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdRenyiEntropy" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdShanbhag" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdTriangle" priority="low"/> <item classname="plugins.haesleinhuepf.buttons.ThresholdYen" priority="low"/> </band> <band name="Labelling"> <item classname="plugins.haesleinhuepf.buttons.ConnectedComponentsLabelingBox" priority="top"/> <item classname="plugins.haesleinhuepf.buttons.ExcludeLabelsOnEdges" priority="med"/> <item classname="plugins.haesleinhuepf.buttons.StatisticsOfLabelledPixels" priority="med"/> </band> </task> </root>