org.bridgedb.rdf.3.1.4.source-code.DataSource.ttl Maven / Gradle / Ivy
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@prefix bridgeDB: .
@prefix ChemInf: .
bridgeDB:DataSource_AERS a bridgeDB:DataSource ;
bridgeDB:fullName "AERS" ;
bridgeDB:systemCode "AERS" ;
bridgeDB:idExample "ADENINE" ;
bridgeDB:primary "true"^^ ;
bridgeDB:hasPrimaryUriPattern .
bridgeDB:DataSource_Affy a bridgeDB:DataSource ;
bridgeDB:fullName "Affy" ;
bridgeDB:systemCode "X" ;
bridgeDB:mainUrl "http://www.affymetrix.com/" ;
bridgeDB:idExample "1851_s_at" ;
bridgeDB:primary "false"^^ ;
bridgeDB:type "probe" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_Agilent a bridgeDB:DataSource ;
bridgeDB:fullName "Agilent" ;
bridgeDB:systemCode "Ag" ;
bridgeDB:idExample "A_24_P98555" ;
bridgeDB:primary "false"^^ ;
bridgeDB:type "probe" .
bridgeDB:DataSource_BIND a bridgeDB:DataSource ;
bridgeDB:fullName "BIND" ;
bridgeDB:systemCode "Bi" ;
bridgeDB:mainUrl "http://www.bind.ca/" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "interaction" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_BioCyc a bridgeDB:DataSource ;
bridgeDB:fullName "BioCyc" ;
bridgeDB:systemCode "Bc" ;
bridgeDB:mainUrl "https://biocyc.org" ;
bridgeDB:idExample "ECOLI:CYT-D-UBIOX-CPLX" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_BioGrid a bridgeDB:DataSource ;
bridgeDB:fullName "BioGrid" ;
bridgeDB:systemCode "Bg" ;
bridgeDB:mainUrl "https://thebiogrid.org/" ;
bridgeDB:idExample "31623" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "interaction" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern .
bridgeDB:DataSource_BioModels_Database a bridgeDB:DataSource ;
bridgeDB:fullName "BioModels Database" ;
bridgeDB:systemCode "Bm" ;
bridgeDB:mainUrl "https://www.ebi.ac.uk/biomodels/" ;
bridgeDB:idExample "BIOMD0000000048" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "pathway" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_Bioontology_MESH a bridgeDB:DataSource ;
bridgeDB:fullName "MeSH" ;
bridgeDB:systemCode "Me" ;
bridgeDB:idExample "C536282" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "other" ;
bridgeDB:hasRegexPattern "^(C|D)\\d{6}$" ;
bridgeDB:hasUriPattern ;
bridgeDB:mainUrl "http://id.nlm.nih.gov/mesh/" ;
bridgeDB:hasUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "https://id.nlm.nih.gov/mesh/" ;
bridgeDB:hasSuffix ".html" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "http://id.nlm.nih.gov/mesh/" ;
bridgeDB:hasSuffix ".html" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "https://id.nlm.nih.gov/mesh/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "http://id.nlm.nih.gov/mesh/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "http://identifiers.org/mesh/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "http://purl.bioontology.org/ontology/MSH/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "http://bioportal.bioontology.org/ontologies/1351?p=terms&conceptid=" .
bridgeDB:DataSource_Bioontology_UMLS_NCIM a bridgeDB:DataSource ;
bridgeDB:fullName "Bioontology UMLS NCIM" ;
bridgeDB:systemCode "NCIM" ;
bridgeDB:idExample "C3203102" ;
bridgeDB:primary "true"^^ ;
bridgeDB:hasUriPattern ;
#bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern .
bridgeDB:DataSource_CAS a bridgeDB:DataSource ;
bridgeDB:fullName "CAS" ;
bridgeDB:systemCode "Ca" ;
bridgeDB:mainUrl "https://commonchemistry.cas.org/" ;
bridgeDB:idExample "50-00-0" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "metabolite" ;
bridgeDB:hasDataType ChemInf:SIO_010004 ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern .
bridgeDB:DataSource_CCDS a bridgeDB:DataSource ;
bridgeDB:fullName "CCDS" ;
bridgeDB:systemCode "Cc" ;
bridgeDB:idExample "CCDS43989" ;
bridgeDB:primary "false"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern .
bridgeDB:DataSource_ChEBI a bridgeDB:DataSource ;
bridgeDB:fullName "ChEBI" ;
bridgeDB:systemCode "Ce" ;
bridgeDB:mainUrl "https://www.ebi.ac.uk/chebi/" ;
bridgeDB:idExample "CHEBI:36927" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "metabolite" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasUriPattern ; #Deprecated
bridgeDB:hasIdentifiersOrgPattern .
bridgeDB:CodeMapper_ChEBI a bridgeDB:CodeMapper ;
bridgeDB:systemCode "Ce" ;
bridgeDB:xrefPrefix "CHEBI:";
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_ChemIDplus a bridgeDB:DataSource ;
bridgeDB:fullName "ChemIDplus" ;
bridgeDB:mainUrl "http://chem.sis.nlm.nih.gov/chemidplus/chemidheavy.jsp" ;
bridgeDB:systemCode "chemidplus" ;
bridgeDB:idExample "000057272" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "metabolite" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern .
bridgeDB:DataSource_ChEMBL_compound a bridgeDB:DataSource ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasIdentifiersOrgPattern .
bridgeDB:DataSource_ChEMBL_compound a bridgeDB:DataSource ;
bridgeDB:fullName "ChEMBL compound" ;
bridgeDB:systemCode "Cl" ;
bridgeDB:mainUrl "https://www.ebi.ac.uk/chembldb/" ;
bridgeDB:idExample "CHEMBL308052" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "metabolite" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasUriPattern
,
,
,
,
;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasIdentifiersOrgInfoPattern ;
bridgeDB:hasRegexPattern "^CHEMBL\\d+$" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "http://identifiers.org/chembl.compound/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "http://info.identifiers.org/chembl.compound/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "https://www.ebi.ac.uk/chembl/compound/inspect/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "https://www.ebi.ac.uk/chembldb/compound/inspect/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "https://www.ebi.ac.uk/chembldb/index.php/compound/inspect/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "https://www.ebi.ac.uk/chembldb/compound/inspect/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "http://rdf.ebi.ac.uk/resource/chembl/molecule/" .
bridgeDB:DataSource_ChEMBL_target a bridgeDB:DataSource ;
bridgeDB:fullName "ChEMBL target" ;
bridgeDB:systemCode "chembl.target" ;
bridgeDB:idExample "CHEMBL3467" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "unknown" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasUriPattern
# chembl//target (sic) was for a while in IMS and at
# http://identifiers.org/chembl.target/
,
,
,
,
,
;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasIdentifiersOrgInfoPattern ;
bridgeDB:hasRegexPattern "^CHEMBL\\d+$" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "http://identifiers.org/chembl.target/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "http://info.identifiers.org/chembl.target/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "https://www.ebi.ac.uk/chembl/target/inspect/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "https://www.ebi.ac.uk/chembldb/target/inspect/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "https://www.ebi.ac.uk/chembldb/index.php/target/inspect/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "https://www.ebi.ac.uk/chembldb/target/inspect/" .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "http://rdf.ebi.ac.uk/resource/chembl/target/" .
bridgeDB:DataSource_Chembl_Protclass a bridgeDB:DataSource ;
bridgeDB:fullName "Chembl Protclass" ;
bridgeDB:systemCode "ChemblProtclass" ;
bridgeDB:idExample "CHEMBL_PC_1000" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "unknown" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasRegexPattern "^CHEMBL_PC_\\d+$" .
bridgeDB:DataSource_ChEMBL_target_component a bridgeDB:DataSource ;
bridgeDB:fullName "ChEMBL target component" ;
bridgeDB:systemCode "chembl.targetcomponent" ;
bridgeDB:mainUrl "https://www.ebi.ac.uk/chembldb/" ;
bridgeDB:idExample "CHEMBL_TC_3597" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "unknown" ;
bridgeDB:hasPrimaryUriPattern .
a bridgeDB:UriPattern ;
bridgeDB:hasPrefix "http://rdf.ebi.ac.uk/resource/chembl/targetcomponent/" .
bridgeDB:DataSource_Chemspider a bridgeDB:DataSource ;
bridgeDB:fullName "Chemspider" ;
bridgeDB:systemCode "Cs" ;
bridgeDB:mainUrl "https://www.chemspider.com/" ;
bridgeDB:idExample "56586" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "metabolite" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_Cint a bridgeDB:DataSource ;
bridgeDB:fullName "Cint" ;
bridgeDB:systemCode "C" ;
bridgeDB:primary "false"^^ ;
bridgeDB:type "probe" .
bridgeDB:DataSource_CodeLink a bridgeDB:DataSource ;
bridgeDB:fullName "CodeLink" ;
bridgeDB:systemCode "Ge" ;
bridgeDB:idExample "GE86325" ;
bridgeDB:primary "false"^^ ;
bridgeDB:type "probe" .
bridgeDB:DataSource_COMPTOX a bridgeDB:DataSource ;
bridgeDB:fullName "COMPTOX" ;
bridgeDB:systemCode "Ctx" ;
bridgeDB:idExample "DTXCID10460459" ;
bridgeDB:primary "true"^^ ;
bridgeDB:hasPrimaryUriPattern .
bridgeDB:DataSource_ConceptWiki a bridgeDB:DataSource ;
bridgeDB:fullName "ConceptWiki" ;
bridgeDB:systemCode "ConceptWiki" ;
bridgeDB:idExample "33a28bb2-35ed-4d94-adfd-3c96053cbaaf" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "unknown" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_CTD_Gene a bridgeDB:DataSource ;
bridgeDB:fullName "CTD Gene" ;
bridgeDB:systemCode "ctd.gene";
bridgeDB:mainUrl "http://ctdbase.org/" ;
bridgeDB:idExample "101" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern .
bridgeDB:DataSource_dbSNP a bridgeDB:DataSource ;
bridgeDB:fullName "dbSNP" ;
bridgeDB:systemCode "Sn" ;
bridgeDB:mainUrl "http://www.ncbi.nlm.nih.gov/sites/entrez?db=snp" ;
bridgeDB:idExample "121909098" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern .
bridgeDB:DataSource_drugbankTarget a bridgeDB:DataSource ;
bridgeDB:fullName "Drugbank Target" ;
bridgeDB:systemCode "drugbankTarget" ;
bridgeDB:idExample "6511" ;
bridgeDB:mainUrl "http://www.drugbank.ca/" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "unknown" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_drugbankv4Target a bridgeDB:DataSource ;
bridgeDB:fullName "Drugbank Target v4" ;
bridgeDB:systemCode "drugbankv4.target" ;
bridgeDB:idExample "BE0000938" ;
bridgeDB:hasRegexPattern "^BE\\d{7}$" ;
bridgeDB:mainUrl "http://www.drugbank.ca/" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "unknown" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasIdentifiersOrgPattern .
bridgeDB:DataSource_drugbankDrugs a bridgeDB:DataSource ;
bridgeDB:fullName "DrugBank" ;
bridgeDB:systemCode "Dr" ;
bridgeDB:mainUrl "http://www.drugbank.ca/" ;
bridgeDB:idExample "DB00001" ;
bridgeDB:hasRegexPattern "^DB\\d{5,7}$" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "metabolite" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_drugbankEnzyme a bridgeDB:DataSource ;
bridgeDB:fullName "Drugbank Enzymes" ;
bridgeDB:systemCode "drugbankEnzymes" ;
bridgeDB:idExample "1" ;
bridgeDB:mainUrl "http://www.drugbank.ca/" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "unknown" ;
bridgeDB:hasPrimaryUriPattern .
bridgeDB:DataSource_EcoGene a bridgeDB:DataSource ;
bridgeDB:fullName "EcoGene" ;
bridgeDB:systemCode "Ec" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:Organism bridgeDB:Organism_Ec .
bridgeDB:DataSource_EMBL a bridgeDB:DataSource ;
bridgeDB:fullName "EMBL" ;
bridgeDB:systemCode "Em" ;
bridgeDB:mainUrl "http://www.ebi.ac.uk/embl/" ;
bridgeDB:idExample "X58356" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_Ensembl a bridgeDB:DataSource ;
bridgeDB:fullName "Ensembl" ;
bridgeDB:systemCode "En" ;
bridgeDB:mainUrl "http://www.ensembl.org/" ;
bridgeDB:idExample "ENSG00000139618" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern ;
## '.../ensembl.transcript/$id' pattern added to fix: https://github.com/bridgedb/BridgeDb/issues/43
## '' pattern likely obsolete, not in uniprot in May, 2017.
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_Entrez_Gene a bridgeDB:DataSource ;
bridgeDB:fullName "Entrez Gene" ;
bridgeDB:systemCode "L" ;
bridgeDB:mainUrl "http://www.ncbi.nlm.nih.gov/gene" ;
bridgeDB:idExample "100010" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_Enzyme_Nomenclature a bridgeDB:DataSource ;
bridgeDB:fullName "Enzyme Nomenclature" ;
bridgeDB:systemCode "E" ;
bridgeDB:alternativeFullName "EC Number" ;
bridgeDB:mainUrl "http://www.ebi.ac.uk/intenz/" ;
bridgeDB:idExample "1.1.1.1" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_FlyBase a bridgeDB:DataSource ;
bridgeDB:fullName "FlyBase" ;
bridgeDB:systemCode "F" ;
bridgeDB:mainUrl "http://flybase.org/" ;
bridgeDB:idExample "FBgn0011293" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:Organism bridgeDB:Organism_Dm .
bridgeDB:DataSource_GenBank a bridgeDB:DataSource ;
bridgeDB:fullName "GenBank" ;
bridgeDB:systemCode "G" ;
bridgeDB:primary "false"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_Gene_Wiki a bridgeDB:DataSource ;
bridgeDB:fullName "Gene Wiki" ;
bridgeDB:systemCode "Gw" ;
bridgeDB:mainUrl "http://en.wikipedia.org/wiki/Portal:Gene_Wiki" ;
bridgeDB:idExample "1017" ;
bridgeDB:primary "false"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern .
bridgeDB:DataSource_GeneOntology a bridgeDB:DataSource ;
bridgeDB:fullName "GeneOntology" ;
bridgeDB:systemCode "T" ;
bridgeDB:mainUrl "http://www.ebi.ac.uk/QuickGO/" ;
bridgeDB:idExample "GO:0006915" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "ontology" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern .
bridgeDB:CodeMapper_GeneOntology a bridgeDB:CodeMapper ;
bridgeDB:systemCode "T" ;
bridgeDB:xrefPrefix "GO:";
bridgeDB:hasUriPattern ; #Deprecated
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_GOA a bridgeDB:DataSource ;
bridgeDB:fullName "GOA" ;
bridgeDB:systemCode "goa" ;
bridgeDB:mainUrl "http://www.ebi.ac.uk/GOA/" ;
bridgeDB:idExample "P12345" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "unknown" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_Gramene_Arabidopsis a bridgeDB:DataSource ;
bridgeDB:fullName "Gramene Arabidopsis" ;
bridgeDB:systemCode "EnAt" ;
bridgeDB:mainUrl "https://www.gramene.org/" ;
bridgeDB:idExample "ATMG01360-TAIR-G" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:Organism bridgeDB:Organism_At .
bridgeDB:DataSource_Gramene_Genes_DB a bridgeDB:DataSource ;
bridgeDB:fullName "Gramene Genes DB" ;
bridgeDB:systemCode "Gg" ;
bridgeDB:mainUrl "https://www.gramene.org/" ;
bridgeDB:idExample "GR:0060184" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern .
bridgeDB:DataSource_Gramene_Literature a bridgeDB:DataSource ;
bridgeDB:fullName "Gramene Literature" ;
bridgeDB:systemCode "Gl" ;
bridgeDB:mainUrl "https://www.gramene.org/" ;
bridgeDB:idExample "6200" ;
bridgeDB:primary "false"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern .
bridgeDB:DataSource_Gramene_Maize a bridgeDB:DataSource ;
bridgeDB:fullName "Gramene Maize" ;
bridgeDB:systemCode "EnZm" ;
bridgeDB:mainUrl "https://www.ensembl.org" ;
bridgeDB:idExample "GRMZM2G174107" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern .
bridgeDB:DataSource_Gramene_Pathway a bridgeDB:DataSource ;
bridgeDB:fullName "Gramene Pathway" ;
bridgeDB:systemCode "Gp" ;
bridgeDB:mainUrl "https://www.gramene.org/pathway" ;
bridgeDB:idExample "AAH72400" ;
bridgeDB:primary "false"^^ ;
bridgeDB:type "pathway" .
bridgeDB:DataSource_Gramene_Rice a bridgeDB:DataSource ;
bridgeDB:fullName "Gramene Rice" ;
bridgeDB:systemCode "EnOj" ;
bridgeDB:mainUrl "https://www.gramene.org/" ;
bridgeDB:idExample "osa-MIR171a" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern .
bridgeDB:DataSource_HGNC a bridgeDB:DataSource ;
bridgeDB:fullName "HGNC" ;
bridgeDB:systemCode "H" ;
bridgeDB:mainUrl "http://www.genenames.org" ;
bridgeDB:idExample "DAPK1" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:Organism bridgeDB:Organism_Hs ;
bridgeDB:hasIdentifiersOrgPattern .
bridgeDB:DataSource_HGNC_Accession_number a bridgeDB:DataSource ;
bridgeDB:fullName "HGNC Accession number" ;
bridgeDB:systemCode "Hac" ;
bridgeDB:mainUrl "http://www.genenames.org" ;
bridgeDB:idExample "HGNC:2674" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:Organism bridgeDB:Organism_Hs ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_HMDB a bridgeDB:DataSource ;
bridgeDB:fullName "HMDB" ;
bridgeDB:systemCode "Ch" ;
bridgeDB:mainUrl "http://www.hmdb.ca/" ;
bridgeDB:idExample "HMDB00001" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "metabolite" ;
bridgeDB:hasDataType ChemInf:SIO_010004 ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern .
bridgeDB:DataSource_HomoloGene a bridgeDB:DataSource ;
bridgeDB:fullName "HomoloGene" ;
bridgeDB:systemCode "Hg" ;
bridgeDB:mainUrl "http://www.ncbi.nlm.nih.gov/homologene/" ;
bridgeDB:idExample "1000" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_HsGene a bridgeDB:DataSource ;
bridgeDB:fullName "HsGene" ;
bridgeDB:systemCode "Hs" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:Organism bridgeDB:Organism_Hs .
bridgeDB:DataSource_Human_Disease_Ontology a bridgeDB:DataSource ;
bridgeDB:fullName "Human Disease Ontology" ;
bridgeDB:systemCode "Do" ;
bridgeDB:idExample "DOID:11337" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "unknown" ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
#Note this is an incomplete record to add an Obsolete URI. The rest should come from miriam.
bridgeDB:DataSource_Illumina a bridgeDB:DataSource ;
bridgeDB:fullName "Illumina" ;
bridgeDB:systemCode "Il" ;
bridgeDB:idExample "ILMN_5668" ;
bridgeDB:primary "false"^^ ;
bridgeDB:type "probe" .
bridgeDB:DataSource_InterPro a bridgeDB:DataSource ;
bridgeDB:fullName "InterPro" ;
bridgeDB:systemCode "I" ;
bridgeDB:mainUrl "http://www.ebi.ac.uk/interpro/" ;
bridgeDB:idExample "IPR000100" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "protein" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_IPI a bridgeDB:DataSource ;
bridgeDB:fullName "IPI" ;
bridgeDB:systemCode "Ip" ;
bridgeDB:mainUrl "http://www.ebi.ac.uk/IPI" ;
bridgeDB:idExample "IPI00000001" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "protein" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_IRGSP_Gene a bridgeDB:DataSource ;
bridgeDB:fullName "IRGSP Gene" ;
bridgeDB:systemCode "Ir" ;
bridgeDB:mainUrl "http://rgp.dna.affrc.go.jp/IRGSP/" ;
bridgeDB:idExample "Os12g0561000" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" .
bridgeDB:DataSource_Kegg_Compound a bridgeDB:DataSource ;
bridgeDB:fullName "KEGG Compound" ;
bridgeDB:systemCode "Ck" ;
bridgeDB:mainUrl "http://www.genome.jp/kegg/ligand.html" ;
bridgeDB:idExample "C12345" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "metabolite" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_KEGG_Drug a bridgeDB:DataSource ;
bridgeDB:fullName "KEGG Drug" ;
bridgeDB:systemCode "Kd" ;
bridgeDB:mainUrl "http://www.genome.jp/kegg/drug/" ;
bridgeDB:idExample "D00123" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "metabolite" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_KEGG_Genes a bridgeDB:DataSource ;
bridgeDB:fullName "KEGG Genes" ;
bridgeDB:systemCode "Kg" ;
bridgeDB:mainUrl "http://www.genome.jp/kegg/genes.html" ;
bridgeDB:idExample "syn:ssr3451" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "gene" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasRegexUriPattern .
bridgeDB:DataSource_KEGG_Glycan a bridgeDB:DataSource ;
bridgeDB:fullName "KEGG Glycan" ;
bridgeDB:systemCode "Kl" ;
bridgeDB:mainUrl "http://www.genome.jp/kegg/glycan/" ;
bridgeDB:idExample "G00123" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "metabolite" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasUriPattern .
bridgeDB:DataSource_KEGG_Metagenome a bridgeDB:DataSource ;
bridgeDB:fullName "KEGG Metagenome" ;
bridgeDB:systemCode "kegg.metagenome" ;
bridgeDB:mainUrl "http://www.genome.jp/kegg/catalog/org_list3.html" ;
bridgeDB:idExample "T30002" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "unknown" ;
bridgeDB:hasRegexUrlPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasRegexUriPattern .
bridgeDB:DataSource_KEGG_Orthology a bridgeDB:DataSource ;
bridgeDB:fullName "KEGG Orthology" ;
bridgeDB:systemCode "kegg.orthology" ;
bridgeDB:mainUrl "http://www.genome.jp/kegg/ko.html" ;
bridgeDB:idExample "K00001" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "protein" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern ;
bridgeDB:hasRegexUriPattern .
bridgeDB:DataSource_KEGG_Pathway a bridgeDB:DataSource ;
bridgeDB:fullName "KEGG Pathway" ;
bridgeDB:systemCode "Kp" ;
bridgeDB:mainUrl "http://www.genome.jp/kegg/pathway.html" ;
bridgeDB:idExample "hsa00620" ;
bridgeDB:primary "true"^^ ;
bridgeDB:type "pathway" ;
bridgeDB:hasPrimaryUriPattern ;
bridgeDB:hasIdentifiersOrgPattern