org.bridgedb.uri.sql.3.1.2.source-code.lens_4_1.properties Maven / Gradle / Ivy
#This file configures the lens and the default Lens Base Uri (see bottom of this file)
#Additional lens as well as additional justifcations to an existing lens can added in local.properties
#The format of the keys here are in 3 of four parts (seperated by a full stop:
#part 1: "lens" identifies this as a lens key. All keys that do not start with "lens." are ignored
#part 2: The identifier for the lens
#Used as part of the Lens URI
#No lens defined here will ever have an identifier starting with local
#So lens defined in local.properties can safely use local* keys
#parts 3: The actual property keys
#name Name of the lens. Can include spaces
#defaults to part 2
#description Longer description of the lens. Can include multiple sententes.
#default value will be created based on part 2
#createdBy and created are for information only and are optional
#any other key that starts with lens. will cause an exception
#part 4: This servers purely to keep the justifcation keys unique as property files allow only single values per key
#The numbers serve no additional purpose and need can be replaced with text
#The strings are purely for human readability and never appear in the system
#All justifcations within a Lens are equal
#No lens defined here will ever have an part 4 starting with local
#So additional justification for the default lens defined in local.properties can safely use local* part4
#It is not recommened to locally extend any lens other that default as lens are subject to change.
#There is no defintion of ALL as it will be automatically added
lens.Default.createdBy https://wiki.openphacts.org/index.php/User:Alasdair_Gray
lens.Default.createdOn 2013-08-06T015:30:000+01:00
lens.Default.description The lens used by default in the Open PHACTS Discovery Platform.
lens.Default.name OPS Default
lens.Default.justification.Inchikey http://semanticscience.org/resource/CHEMINF_000059
lens.Default.justification.ChemicalEntity http://semanticscience.org/resource/SIO_010004
lens.Default.justification.Disease http://semanticscience.org/resource/SIO_010299
lens.Default.justification.Gene http://semanticscience.org/resource/SIO_010035
lens.Default.justification.Protein http://semanticscience.org/resource/SIO_010043
lens.Default.justification.ProteingCodingGene http://semanticscience.org/resource/SIO_000985
lens.Default.justification.FunctionalRNACodingGene http://semanticscience.org/resource/SIO_000986
lens.Default.justification.mRNA http://semanticscience.org/resource/SIO_010099
lens.Default.justification.Pathway http://semanticscience.org/resource/SIO_001107
lens.Default.justification.PathwayOrNetworkName http://edamontology.org/data_2342
lens.Default.justification.DatabaseCrossReference http://semanticscience.org/resource/SIO_001171
lens.Default.justification.ConceptWikiGene http://example.com/ConceptWikiProtein
lens.ChemistryStrict.createdBy https://wiki.openphacts.org/index.php/User:Christian
lens.ChemistryStrict.createdOn 2014-02-05T015:30:000+01:00
lens.ChemistryStrict.description This lens excludes all Chemistry Parent Child relationships.
lens.ChemistryStrict.name Chemistry Strict
lens.ChemistryStrict.justification.Inchikey http://semanticscience.org/resource/CHEMINF_000059
lens.ChemistryStrict.justification.ChemicalEntity http://semanticscience.org/resource/SIO_010004
lens.ChemistryStrict.justification.Gene http://semanticscience.org/resource/SIO_010035
lens.ChemistryStrict.justification.Protein http://semanticscience.org/resource/SIO_010043
lens.ChemistryStrict.justification.ProteingCodingGene http://semanticscience.org/resource/SIO_000985
lens.ChemistryStrict.justification.FunctionalRNACodingGene http://semanticscience.org/resource/SIO_000986
lens.ChemistryStrict.justification.mRNA http://semanticscience.org/resource/SIO_010099
lens.ChemistryStrict.justification.Pathway http://semanticscience.org/resource/SIO_001107
lens.ChemistryStrict.justification.PathwayOrNetworkName http://edamontology.org/data_2342
lens.ChemistryStrict.justification.DatabaseCrossReference http://semanticscience.org/resource/SIO_001171
lens.ChemistryStrict.justification.ConceptWikiGene http://example.com/ConceptWikiProtein
lens.ChemistryTautomer.createdBy https://wiki.openphacts.org/index.php/User:Christian
lens.ChemistryTautomer.createdOn 2014-02-05T015:30:000+01:00
lens.ChemistryTautomer.description This lens includes only the Tautomer (bidirectinal) Chemistry Parent Child relationships.
lens.ChemistryTautomer.name Chemistry Tautomer
lens.ChemistryTautomer.justification.Inchikey http://semanticscience.org/resource/CHEMINF_000059
lens.ChemistryTautomer.justification.ChemicalEntity http://semanticscience.org/resource/SIO_010004
lens.ChemistryTautomer.justification.Gene http://semanticscience.org/resource/SIO_010035
lens.ChemistryTautomer.justification.Protein http://semanticscience.org/resource/SIO_010043
lens.ChemistryTautomer.justification.ProteingCodingGene http://semanticscience.org/resource/SIO_000985
lens.ChemistryTautomer.justification.FunctionalRNACodingGene http://semanticscience.org/resource/SIO_000986
lens.ChemistryTautomer.justification.mRNA http://semanticscience.org/resource/SIO_010099
lens.ChemistryTautomer.justification.Pathway http://semanticscience.org/resource/SIO_001107
lens.ChemistryTautomer.justification.PathwayOrNetworkName http://edamontology.org/data_2342
lens.ChemistryTautomer.justification.DatabaseCrossReference http://semanticscience.org/resource/SIO_001171
lens.ChemistryTautomer.justification.ConceptWikiGene http://example.com/ConceptWikiProtein
lens.ChemistryTautomer.justification.is_tautomer_of http://purl.obolibrary.org/obo#is_tautomer_of
lens.ConceptWikiGene.createdBy https://wiki.openphacts.org/index.php/User:Christian
lens.ConceptWikiGene.createdOn 2013-08-06T015:30:000+01:00
lens.ConceptWikiGene.description The lens used to Add ConcepWiki Gene URIs into the Open PHACTS Discovery Platform.
lens.ConceptWikiGene.name OPS With ConceptWiki genes
lens.ConceptWikiGene.justification.Inchikey http://semanticscience.org/resource/CHEMINF_000059
lens.ConceptWikiGene.justification.ChemicalEntity http://semanticscience.org/resource/SIO_010004
lens.ConceptWikiGene.justification.Disease http://semanticscience.org/resource/SIO_010299
lens.ConceptWikiGene.justification.Gene http://semanticscience.org/resource/SIO_010035
lens.ConceptWikiGene.justification.Protein http://semanticscience.org/resource/SIO_010043
lens.ConceptWikiGene.justification.ProteingCodingGene http://semanticscience.org/resource/SIO_000985
lens.ConceptWikiGene.justification.FunctionalRNACodingGene http://semanticscience.org/resource/SIO_000986
lens.ConceptWikiGene.justification.mRNA http://semanticscience.org/resource/SIO_010099
lens.ConceptWikiGene.justification.Pathway http://semanticscience.org/resource/SIO_001107
lens.ConceptWikiGene.justification.PathwayOrNetworkName http://edamontology.org/data_2342
lens.ConceptWikiGene.justification.DatabaseCrossReference http://semanticscience.org/resource/SIO_001171
lens.ConceptWikiGene.justification.ConceptWikiGene http://example.com/ConceptWikiGene
lens.ChemistryParentChildTautomer.createdBy https://wiki.openphacts.org/index.php/User:Christian
lens.ChemistryParentChildTautomer.createdOn 2014-02-05T015:30:000+01:00
lens.ChemistryParentChildTautomer.description This lens turns on the parent/child (unidirectional) and Tautomer (bidirectional) relationships as defined by the Chemical Registration Service.
lens.ChemistryParentChildTautomer.name Chemistry Parent/Child Plus Tautomer Relationships
lens.ChemistryParentChildTautomer.justification.Inchikey http://semanticscience.org/resource/CHEMINF_000059
lens.ChemistryParentChildTautomer.justification.ChemicalEntity http://semanticscience.org/resource/SIO_010004
lens.ChemistryParentChildTautomer.justification.hasOPSNormalizedCounterpart http://semanticscience.org/resource/CHEMINF_000458
lens.ChemistryParentChildTautomer.justification.hasMajorTautomerAtpH7_4 http://semanticscience.org/resource/CHEMINF_000486
lens.ChemistryParentChildTautomer.justification.is_tautomer_of http://purl.obolibrary.org/obo#is_tautomer_of
lens.ChemistryParentChildTautomer.justification.has_isotopically_unspecified_parent http://semanticscience.org/resource/CHEMINF_000459
lens.ChemistryParentChildTautomer.justification.has_stereoundefined_parent http://semanticscience.org/resource/CHEMINF_000456
lens.ChemistryParentChildTautomer.justification.hasComponentWithUnchargedCounterpart http://semanticscience.org/resource/CHEMINF_000480
lens.ChemistryParentChildTautomer.justification.has_uncharged_counterpart http://semanticscience.org/resource/CHEMINF_000460
lens.ChemistryParentChildTautomer.justification.Gene http://semanticscience.org/resource/SIO_010035
lens.ChemistryParentChildTautomer.justification.Protein http://semanticscience.org/resource/SIO_010043
lens.ChemistryParentChildTautomer.justification.ProteingCodingGene http://semanticscience.org/resource/SIO_000985
lens.ChemistryParentChildTautomer.justification.FunctionalRNACodingGene http://semanticscience.org/resource/SIO_000986
lens.ChemistryParentChildTautomer.justification.mRNA http://semanticscience.org/resource/SIO_010099
lens.ChemistryParentChildTautomer.justification.Pathway http://semanticscience.org/resource/SIO_001107
lens.ChemistryParentChildTautomer.justification.PathwayOrNetworkName http://edamontology.org/data_2342
lens.ChemistryParentChildTautomer.justification.ConceptWikiGene http://example.com/ConceptWikiProtein
lens.ChemistryParentChildTautomer.justification.hasPart http://purl.obolibrary.org/obo#has_part
lens.ChemistryParentChild.createdBy https://wiki.openphacts.org/index.php/User:Christian
lens.ChemistryParentChild.createdOn 2014-02-05T015:30:000+01:00
lens.ChemistryParentChild.description This lens turns on the parent/child (unidirectional) (but not Tautomer) relationships defined by the Chemical Registration Service.
lens.ChemistryParentChild.name Chemistry Parent/Child Relationships
lens.ChemistryParentChild.justification.Inchikey http://semanticscience.org/resource/CHEMINF_000059
lens.ChemistryParentChild.justification.ChemicalEntity http://semanticscience.org/resource/SIO_010004
lens.ChemistryParentChild.justification.hasOPSNormalizedCounterpart http://semanticscience.org/resource/CHEMINF_000458
lens.ChemistryParentChild.justification.hasMajorTautomerAtpH7_4 http://semanticscience.org/resource/CHEMINF_000486
lens.ChemistryParentChild.justification.has_isotopically_unspecified_parent http://semanticscience.org/resource/CHEMINF_000459
lens.ChemistryParentChild.justification.has_stereoundefined_parent http://semanticscience.org/resource/CHEMINF_000456
lens.ChemistryParentChild.justification.hasComponentWithUnchargedCounterpart http://semanticscience.org/resource/CHEMINF_000480
lens.ChemistryParentChild.justification.has_uncharged_counterpart http://semanticscience.org/resource/CHEMINF_000460
lens.ChemistryParentChild.justification.Gene http://semanticscience.org/resource/SIO_010035
lens.ChemistryParentChild.justification.Protein http://semanticscience.org/resource/SIO_010043
lens.ChemistryParentChild.justification.ProteingCodingGene http://semanticscience.org/resource/SIO_000985
lens.ChemistryParentChild.justification.FunctionalRNACodingGene http://semanticscience.org/resource/SIO_000986
lens.ChemistryParentChild.justification.mRNA http://semanticscience.org/resource/SIO_010099
lens.ChemistryParentChild.justification.Pathway http://semanticscience.org/resource/SIO_001107
lens.ChemistryParentChild.justification.PathwayOrNetworkName http://edamontology.org/data_2342
lens.ChemistryParentChild.justification.ConceptWikiGene http://example.com/ConceptWikiProtein
lens.ChemistryParentChild.justification.hasPart http://purl.obolibrary.org/obo#has_part
lens.ChemistryChildParent.createdBy https://wiki.openphacts.org/index.php/User:Christian
lens.ChemistryChildParent.createdOn 2014-02-05T015:30:000+01:00
lens.ChemistryChildParent.description This lens turns on the child/parent (unidirectional) (but not Tautomer) relationships defined by the Chemical Registration Service.
lens.ChemistryChildParent.name Chemistry Child/Parent Relationships
lens.ChemistryChildParent.justification.has_part http://purl.obolibrary.org/obo#has_part
lens.ChemistryChildParent.justification.Inchikey http://semanticscience.org/resource/CHEMINF_000059
lens.ChemistryChildParent.justification.ChemicalEntity http://semanticscience.org/resource/SIO_010004
lens.ChemistryChildParent.justification.Gene http://semanticscience.org/resource/SIO_010035
lens.ChemistryChildParent.justification.Protein http://semanticscience.org/resource/SIO_010043
lens.ChemistryChildParent.justification.ProteingCodingGene http://semanticscience.org/resource/SIO_000985
lens.ChemistryChildParent.justification.FunctionalRNACodingGene http://semanticscience.org/resource/SIO_000986
lens.ChemistryChildParent.justification.mRNA http://semanticscience.org/resource/SIO_010099
lens.ChemistryChildParent.justification.Pathway http://semanticscience.org/resource/SIO_001107
lens.ChemistryChildParent.justification.PathwayOrNetworkName http://edamontology.org/data_2342
lens.ChemistryChildParent.justification.DatabaseCrossReference http://semanticscience.org/resource/SIO_001171
lens.ChemistryChildParent.justification.ConceptWikiGene http://example.com/ConceptWikiProtein
lens.ChemistryChildParent.justification.isSstereoundefinedParentOf http://semanticscience.org/resource/CHEMINF_000491
lens.ChemistryChildParent.justification.isOpsNormalizedCounterpartOf http://semanticscience.org/resource/CHEMINF_000494
lens.ChemistryChildParent.justification.isIsotopicallyUnspecifiedParentOf http://semanticscience.org/resource/CHEMINF_000489
lens.ChemistryChildParent.justification.isUnchargedCounterpartOf http://semanticscience.org/resource/CHEMINF_000495
lens.ChemistryChildParent.justification.isPartOf http://purl.obolibrary.org/obo#part_of
lens.ChemistryChildParentTautomer.createdBy https://wiki.openphacts.org/index.php/User:Christian
lens.ChemistryChildParentTautomer.createdOn 2014-02-05T015:30:000+01:00
lens.ChemistryChildParentTautomer.description This lens turns on the child/parent (unidirectional) and Tautomer (bidirectional) relationships defined by the Chemical Registration Service.
lens.ChemistryChildParentTautomer.name Chemistry Child/Parent Plus Tautomer Relationships
lens.ChemistryChildParentTautomer.justification.has_part http://purl.obolibrary.org/obo#has_part
lens.ChemistryChildParentTautomer.justification.Inchikey http://semanticscience.org/resource/CHEMINF_000059
lens.ChemistryChildParentTautomer.justification.ChemicalEntity http://semanticscience.org/resource/SIO_010004
lens.ChemistryChildParentTautomer.justification.Gene http://semanticscience.org/resource/SIO_010035
lens.ChemistryChildParentTautomer.justification.Protein http://semanticscience.org/resource/SIO_010043
lens.ChemistryChildParentTautomer.justification.ProteingCodingGene http://semanticscience.org/resource/SIO_000985
lens.ChemistryChildParentTautomer.justification.FunctionalRNACodingGene http://semanticscience.org/resource/SIO_000986
lens.ChemistryChildParentTautomer.justification.mRNA http://semanticscience.org/resource/SIO_010099
lens.ChemistryChildParentTautomer.justification.Pathway http://semanticscience.org/resource/SIO_001107
lens.ChemistryChildParentTautomer.justification.PathwayOrNetworkName http://edamontology.org/data_2342
lens.ChemistryChildParentTautomer.justification.DatabaseCrossReference http://semanticscience.org/resource/SIO_001171
lens.ChemistryChildParentTautomer.justification.ConceptWikiGene http://example.com/ConceptWikiProtein
lens.ChemistryChildParentTautomer.justification.isSstereoundefinedParentOf http://semanticscience.org/resource/CHEMINF_000491
lens.ChemistryChildParentTautomer.justification.isOpsNormalizedCounterpartOf http://semanticscience.org/resource/CHEMINF_000494
lens.ChemistryChildParentTautomer.justification.isIsotopicallyUnspecifiedParentOf http://semanticscience.org/resource/CHEMINF_000489
lens.ChemistryChildParentTautomer.justification.isUnchargedCounterpartOf http://semanticscience.org/resource/CHEMINF_000495
lens.ChemistryChildParentTautomer.justification.is_tautomer_of http://purl.obolibrary.org/obo#is_tautomer_of
lens.ChemistryChildParentTautomer.justification.isPartOf http://purl.obolibrary.org/obo#part_of
lens.ChemistryAll.createdBy https://wiki.openphacts.org/index.php/User:Christian
lens.ChemistryAll.createdOn 2014-02-05T015:30:000+01:00
lens.ChemistryAll.description This lens turns on ALL Chemistry (bidirectional) relationship defined by the Chemical Registration Service.
lens.ChemistryAll.name Chemistry All
lens.ChemistryAll.justification.has_part http://purl.obolibrary.org/obo#has_part
lens.ChemistryAll.justification.Inchikey http://semanticscience.org/resource/CHEMINF_000059
lens.ChemistryAll.justification.ChemicalEntity http://semanticscience.org/resource/SIO_010004
lens.ChemistryAll.justification.Disease http://semanticscience.org/resource/SIO_010299
lens.ChemistryAll.justification.Gene http://semanticscience.org/resource/SIO_010035
lens.ChemistryAll.justification.Protein http://semanticscience.org/resource/SIO_010043
lens.ChemistryAll.justification.ProteingCodingGene http://semanticscience.org/resource/SIO_000985
lens.ChemistryAll.justification.FunctionalRNACodingGene http://semanticscience.org/resource/SIO_000986
lens.ChemistryAll.justification.mRNA http://semanticscience.org/resource/SIO_010099
lens.ChemistryAll.justification.Pathway http://semanticscience.org/resource/SIO_001107
lens.ChemistryAll.justification.PathwayOrNetworkName http://edamontology.org/data_2342
lens.ChemistryAll.justification.DatabaseCrossReference http://semanticscience.org/resource/SIO_001171
lens.ChemistryAll.justification.ConceptWikiGene http://example.com/ConceptWikiProtein
lens.ChemistryAll.justification.isSstereoundefinedParentOf http://semanticscience.org/resource/CHEMINF_000491
lens.ChemistryAll.justification.isOpsNormalizedCounterpartOf http://semanticscience.org/resource/CHEMINF_000494
lens.ChemistryAll.justification.isIsotopicallyUnspecifiedParentOf http://semanticscience.org/resource/CHEMINF_000489
lens.ChemistryAll.justification.isUnchargedCounterpartOf http://semanticscience.org/resource/CHEMINF_000495
lens.ChemistryAll.justification.is_tautomer_of http://purl.obolibrary.org/obo#is_tautomer_of
lens.ChemistryAll.justification.hasOPSNormalizedCounterpart http://semanticscience.org/resource/CHEMINF_000458
lens.ChemistryAll.justification.hasMajorTautomerAtpH7_4 http://semanticscience.org/resource/CHEMINF_000486
lens.ChemistryAll.justification.has_isotopically_unspecified_parent http://semanticscience.org/resource/CHEMINF_000459
lens.ChemistryAll.justification.has_stereoundefined_parent http://semanticscience.org/resource/CHEMINF_000456
lens.ChemistryAll.justification.hasComponentWithUnchargedCounterpart http://semanticscience.org/resource/CHEMINF_000480
lens.ChemistryAll.justification.has_uncharged_counterpart http://semanticscience.org/resource/CHEMINF_000460
lens.ChemistryAll.justification.isUnchargedCounterpartOf http://purl.obolibrary.org/obo#has_part
#The LensBaseUri will be used for any method that returns a lens that can not get the contextPath from the server such as the rdf.
defaultLensBaseUri http://openphacts.org/specs/