js.biobank-connect.js Maven / Gradle / Ivy
(function($, molgenis, w) {
"use strict";
var restApi = new molgenis.RestClient();
var nrItemsPerPage = 10;
molgenis.getTotalNumberOfItems = function(dataSetId){
var number = 0;
var request = {
'dataSetId' : dataSetId,
'query' : {
'pageSize' : 100000,
}
};
$.ajax({
type : 'POST',
url : molgenis.adaptContextUrl() + '/allattributes',
async : false,
data : JSON.stringify(request),
contentType : 'application/json',
success : function(data){
number = data.searchHits.length;
}
});
return number;
};
molgenis.createMatrixForDataItems = function(options){
var request = {
'dataSetId' : options.dataSetId,
'queryString' : options.queryText,
'query' : {
'offset' : options.page ? options.page.start : 0 ,
'pageSize' : nrItemsPerPage,
'sort' : options.sortRule
}
};
$.ajax({
type : 'POST',
url : molgenis.adaptContextUrl() + '/allattributes',
async : false,
data : JSON.stringify(request),
contentType : 'application/json',
success : function(data, textStatus, request){
if(data.searchHits){
var searchHits = data.searchHits;
var table = $('
').addClass('table table-bordered');
options.container.find('table').remove();
options.container.prepend(table);
var body = $('');
table.append(createTableHeader(options)).append(body);
if(options.createTableRow === undefined || options.createTableRow === null){
options.createTableRow = createTableRow;
}
$.each(searchHits, function(){
$(options.createTableRow($(this)[0]['columnValueMap'], table)).appendTo(body);
});
initPager(options, data.totalHitCount);
}else{
molgenis.createAlert([{'message' : 'There is no dataset available!'}], 'warning', $('#wizardForm'));
}
}
});
function initPager(options, totalHitCount){
if(options.updatePager || options.container.find('#pager-' + options.dataSetId).length === 0){
options.updatePager = false;
var tablePager = $('').attr('id', 'pager-' + options.dataSetId);
options.container.find('.pagination').parents('div:eq(1)').remove();
options.container.append(tablePager);
tablePager.pager({
'nrItems' : totalHitCount,
'nrItemsPerPage' : nrItemsPerPage,
'onPageChange' : function(page) {
options.page = page;
molgenis.createMatrixForDataItems(options);
}
});
}
}
function createTableHeader(options){
var headerRow = $('' + options.tableHeaders[0] + ' ').css('width', firstColumnWidth + '%').appendTo(headerRow);
if(options.sortRule){
if (options.sortRule.orders[0].direction == 'ASC') {
$('').appendTo(firstColumn);
} else {
$('').appendTo(firstColumn);
}
} else {
$('').appendTo(firstColumn);
}
var columnWidth = (100 - firstColumnWidth) /options.tableHeaders.length;
$.each(options.tableHeaders, function(index, eachHeader){
if(index > 0){
$('Message : ');
items.push('Other user is currently running BiobankConnect using the same account, please be patient or login as another user! ');
$('#wizardForm').html(items.join(''));
setTimeout(function(){
molgenis.ontologyMatcherRunning(callback);
}, 5000);
}else{
var childElements = $('#wizardForm').data('childElements');
$('#wizardForm').data('childElements', null);
if(childElements !== null && childElements !== undefined) $('#wizardForm').empty().append(childElements);
$('ul.pager a').on('click', function(e) {
e.preventDefault();
if (!$(this).parent().hasClass('disabled')) {
$('#wizardForm').attr('action', $(this).attr('href')).submit();
}
return false;
});
if(callback !== undefined && callback !== null) {
callback();
}
}
}
});
};
molgenis.getFeatureFromIndex = function (feature, callback){
$.ajax({
type : 'POST',
url : molgenis.adaptContextUrl() + '/attribute',
async : false,
data : JSON.stringify(molgenis.hrefToId(feature.href)),
contentType : 'application/json',
success : function(data, textStatus, request){
$.each(data.searchHits, function(index, hit){
callback(hit);
return false;
});
}
});
};
molgenis.dataItemsTypeahead = function (dataSetId, query, response, approximate){
$.ajax({
type : 'POST',
url : molgenis.adaptContextUrl() + '/allattributes',
async : false,
data : JSON.stringify({'dataSetId' : dataSetId, 'queryString' : query, 'approximate' : (approximate !== undefined && approximate !== null)}),
contentType : 'application/json',
success : function(data, textStatus, request){
var result = [];
$.each(data.searchHits, function(index, hit){
var value = hit.columnValueMap.name;
if($.inArray(value, result) === -1){
result.push(hit.columnValueMap);
}
});
response(result);
}
});
};
molgenis.ontologyTermTypeahead = function (field, query, response){
$.ajax({
type : 'POST',
url : molgenis.adaptContextUrl() + '/ontologyterm',
async : false,
data : JSON.stringify({'queryString' : query}),
contentType : 'application/json',
success : function(data, textStatus, request){
var results = [];
var uniqueOntologyTerms = [];
$.each(data.searchHits, function(index, hit){
var ontologyName = hit.columnValueMap.ontologyName;
var ontologyTermSynonym = hit.columnValueMap.ontologyTermSynonym;
var identifier = ontologyName === '' ? ontologyTermSynonym : ontologyName + ':' + ontologyTermSynonym;
hit.columnValueMap.identifier = identifier;
if($.inArray(identifier, uniqueOntologyTerms) === -1){
uniqueOntologyTerms.push(identifier);
results.push(hit.columnValueMap);
}
});
response(results);
}
});
};
molgenis.adaptContextUrl = function (){
return molgenis.getContextUrl().replace(/biobankconnect$/g, "algorithm");
};
$(function(){
var buttonGroup = $('.bwizard-buttons');
$('#wizardForm').prepend(buttonGroup);
buttonGroup.before('');
$('.wizard-page').removeClass('well');
$('div.wizard-page').css('min-height', 300);
$(document).keyup(function(e) {
if(e.which == 27){
$('div.modal').modal('hide');
}
});
});
}($, window.top.molgenis = window.top.molgenis || {}, window.top));© 2015 - 2025 Weber Informatics LLC | Privacy Policy