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• sorta-result-anonymous.js

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js.sorta-result-anonymous.js Maven / Gradle / Ivy

(function($, molgenis) {
	"use strict";
	
	var NOT_AVAILABLE = 'N/A';
	var container = null;
	var THRESHOLD = 100;
	
	molgenis.SortaAnonymous = function SortaAnonymous(form_container){
		container = form_container;
	};
	
	molgenis.SortaAnonymous.prototype.renderPage = function(){
		
		container.children('div.row:gt(0)').remove();
		
		var divContainerThreshold = $('
').addClass('row').css('margin-bottom','15px').appendTo(container);
		$('
').addClass('col-md-offset-3 col-md-4').append('Current threshold : ' + THRESHOLD + '%').css('padding-left','0px').appendTo(divContainerThreshold);
		var thresholdUpdateButton = $('').attr('type','button').addClass('btn btn-default').text('Update');
		var inputGroupButton = $('').addClass('input-group-btn').append(thresholdUpdateButton);		
		var thresholdValue = $('');
		var divContainerButtonFormGroup = $('
').addClass('input-group pull-right').append(inputGroupButton).append(thresholdValue);
		$('
').addClass('col-md-2').css('padding-right','0px').append(divContainerButtonFormGroup).appendTo(divContainerThreshold);
		
		var divContainerSummary = $('
').addClass('row').appendTo(container);
		var divContainerSummaryCenterStyleWell = $('
').addClass('col-md-offset-3 col-md-6 well').appendTo(divContainerSummary);
		
		var divContainerMatchButton = $('
').addClass('row').appendTo(divContainerSummaryCenterStyleWell);
		var matchButon = $('').attr('type', 'button').addClass('btn btn-primary pull-right').text('Show');
		var matchSpanContainer = $('');
		$('
').addClass('col-md-12').append('Total number of match results is ').append(matchSpanContainer).append(matchButon).appendTo(divContainerMatchButton);
		
		
		var divContainerUnMatchButton = $('
').addClass('row').prepend('
').appendTo(divContainerSummaryCenterStyleWell);
		var unmatchButon = $('').attr('type', 'button').addClass('btn btn-info pull-right').text('Show');
		var unmatchSpanContainer = $('');
		$('
').addClass('col-md-12').append('Total number of unmatch results is ').append(unmatchSpanContainer).append(unmatchButon).appendTo(divContainerUnMatchButton);
		
		var divContainerDownloadButton = $('
').addClass('row').prepend('
').appendTo(divContainerSummaryCenterStyleWell);
		var downloadButton = $('').attr('type', 'button').addClass('btn btn-primary').text('Download');
		var backToFrontPageButton = $('').attr('type', 'button').addClass('btn btn-default').html('New task ').append(' ');
		$('
').addClass('col-md-2').append(downloadButton).appendTo(divContainerDownloadButton);
		$('
').addClass('col-md-2').append(backToFrontPageButton).appendTo(divContainerDownloadButton);
		
		$(backToFrontPageButton).click(function(){
			container.attr({
				'action' : molgenis.getContextUrl(),
				'method' : 'GET'
			}).submit();
		});
		
		$(downloadButton).click(function(){
			container.attr({
				'action' : molgenis.getContextUrl() + '/download/',
				'method' : 'GET'
			}).submit();
		});
		
		$(inputGroupButton).click(function(){
			var customThreshold = Number($(thresholdValue).val());
			if(customThreshold && customThreshold !== THRESHOLD){
				THRESHOLD = customThreshold;
				molgenis.SortaAnonymous.prototype.renderPage();
			}
		});
		
		$(thresholdValue).keydown(function(e){
			if(e.keyCode === 13){
				$(inputGroupButton).click();
			}
		});
		
		getMatchResults(function(matchedResults){
			var perfectMatches = [];
			var partialMatches = [];
			$.each(matchedResults, function(index, matchedResult){
				if(matchedResult.ontologyTerm.length > 0){
					var matchedScore = matchedResult.ontologyTerm[0].Combined_Score;
					if(matchedScore && matchedScore.toFixed(2) >= THRESHOLD){
						perfectMatches.push(matchedResult);
					}else{
						partialMatches.push(matchedResult);
					}
				}else{
					partialMatches.push(matchedResult);
				}
			});
			
			matchSpanContainer.html('' + perfectMatches.length + '');
			
			unmatchSpanContainer.html('' + partialMatches.length + '');

			matchButon.click(function(){
				renderMatchedResultTable(perfectMatches, true);
			});
			
			unmatchButon.click(function(){
				renderMatchedResultTable(partialMatches, false);
			}).click();
		});

		
		function getMatchResults(callback){
			$.ajax({
				type : 'GET',
				url : molgenis.getContextUrl() + '/retrieve',
				contentType : 'application/json',
				success : function(matchedResults) {
					if(callback !== null && typeof callback === 'function'){
						callback(matchedResults)
					}
				}
			});
		}
		
		function renderMatchedResultTable(matches, isMatched){
			
			if($('#sorta-result-table')){			
				$('#sorta-result-table').remove();
			}
			var divContainerMatchResult =  $('
').attr('id', 'sorta-result-table').addClass('row').appendTo(container);
			
			if(matches.length > 0){
				
				var adjustedScoreHoverover = $('
Adjusted score ?
').css({'cursor':'pointer'}).popover({
					'title' : 'Explanation',
					'content' : '
Adjusted scores are derived from the original scores (lexical similarity) combined with the weight of the words (inverse document frequency)
',
					'placement' : 'top',
					'trigger' : 'hover',
					'html' : true
				});
				var tableTitle = $('
').css('font-size','20px').append('' + (isMatched ? 'Matched results' : 'Unmatched results') + '');
				var table = $('
').addClass('table');
				var tableHeader = $('').appendTo(table);
				$('').appendTo(table);
					var firstOntologyTerm = match.ontologyTerm ? match.ontologyTerm[0] : null;
					$('');
					$('
').append('Input term').appendTo(tableHeader);
				$('
').append('Ontologgy terms').appendTo(tableHeader);
				$('
').append('Score').appendTo(tableHeader);
				$('
').append(adjustedScoreHoverover).appendTo(tableHeader);
				$('
').append('Match').appendTo(tableHeader);
				$.each(matches, function(index, match){
					var row = $('
').append(getInputTermInfo(match.inputTerm)).appendTo(row);
					$('
').append(getOntologyTermInfo(firstOntologyTerm)).appendTo(row);
					$('
').append(getMatchScore(firstOntologyTerm)).appendTo(row);
					$('
').append(getMatchAdjustedScore(firstOntologyTerm)).appendTo(row);
					$('
').append(firstOntologyTerm ? 'Match' : NOT_AVAILABLE).appendTo(row);
					row.find('button:eq(0)').click(function(){
						var clearButton = $('').attr('type','button').addClass('btn btn-danger pull-right').css({'margin-top':'-10px','margin-bottom':'10px'}).text('Clear').insertBefore(table);
						table.find('tr:not(:first-child)').hide();
						table.find('tr >th:last-child').hide();
						table.append(renderCandidateMatchTable(match));
						clearButton.click(function(){
							table.find('tr:visible:not(:first-child)').remove();
							table.find('tr').show();
							table.find('th').show();
							$(this).remove();
						});
					});
				});
				$('
').addClass('col-md-offset-1 col-md-10').append(tableTitle).append(table).appendTo(divContainerMatchResult);
			}else{
				$('
').addClass('col-md-offset-3 col-md-6').text('No matches are found!').appendTo(divContainerMatchResult);
			}
			return divContainerMatchResult;
		}
		
		function renderCandidateMatchTable(match, table){
			var items = [];
			if(match.ontologyTerm){
				$.each(match.ontologyTerm, function(index, candidateMatch){
					if(index >= 10) return;
					var candidateMatchRow = $('
').append(index == 0 ? getInputTermInfo(match.inputTerm) : '').appendTo(candidateMatchRow);
					$('
').append(getOntologyTermInfo(candidateMatch)).appendTo(candidateMatchRow);
					$('
').append(getMatchScore(candidateMatch)).appendTo(candidateMatchRow);
					$('
').append(getMatchAdjustedScore(candidateMatch)).appendTo(candidateMatchRow);
					items.push(candidateMatchRow);
				});
			}
			return items;
		}
		
		function getInputTermInfo(inputTerm){
			var inputTermDiv = $('
');
			$.map(inputTerm, function(val, key){					
				inputTermDiv.append(key + ' : ' + val).append('
');
			});
			return inputTermDiv;
		}
		
		function getOntologyTermInfo(ontologyTerm){
			var inputTermDiv = $('
');
			if(ontologyTerm){
				var divContainerOTName = getOntologyTermName(ontologyTerm);
				var divContainerOTSynonym = getOntologyTermSynonyms(ontologyTerm);
				var divContainerOTAnnotation = getOntologyTermAnnotations(ontologyTerm);
				inputTermDiv.append(divContainerOTName).append(divContainerOTSynonym).append(divContainerOTAnnotation);
			}else{
				inputTermDiv.append(NOT_AVAILABLE);
			}
			return inputTermDiv;
		}
		
		function getOntologyTermName(ontologyTerm){
			return $('
').append('Name : ').append('' + ontologyTerm.ontologyTermName + '');
		}
		
		function getOntologyTermAnnotations(ontologyTerm){
			var divContainerOTAnnotations = [];
			if(ontologyTerm.ontologyTermDynamicAnnotation.length > 0){
				var annotationMap = {};
				$.each(ontologyTerm.ontologyTermDynamicAnnotation, function(index, annotation){
					if(!annotationMap[annotation.name]){
						annotationMap[annotation.name] = [];
					}
					annotationMap[annotation.name].push(annotation.value);
				});
				$.map(annotationMap, function(val, key){					
					divContainerOTAnnotations.push($('
').append(key + ' : ' + val.join(', ')));
				});
			}
			return divContainerOTAnnotations;
		}
		
		function getOntologyTermSynonyms(ontologyTerm){
			var divContainerOTSynonym = $('
Synonym : 
');
			if(ontologyTerm){
				var synonyms = [];
				$.each(ontologyTerm.ontologyTermSynonym, function(index, ontologyTermSynonym){
					synonyms.push(ontologyTermSynonym.ontologyTermSynonym);
				});
				if(synonyms.length == 1){
					divContainerOTSynonym.append(synonyms.join());		
				}else{
					divContainerOTSynonym.addClass('show-popover').append('' + synonyms.length + ' synonyms, see more details').popover({
						'content' : synonyms.join('

'),
						'placement' : 'auto',
						'trigger': 'hover',
						'html' : true
					});
				}
			}else{
				divContainerOTSynonym.append(NOT_AVAILABLE);
			}
			return divContainerOTSynonym;
		}
		
		function getMatchScore(ontologyTerm){
			return ontologyTerm ? $('
').append(ontologyTerm.Score.toFixed(2) + '%') : NOT_AVAILABLE;
		}
		
		function getMatchAdjustedScore(ontologyTerm){
			return ontologyTerm ? $('
').append(ontologyTerm.Combined_Score.toFixed(2) + '%') : NOT_AVAILABLE;
		}
	};
}($, window.top.molgenis = window.top.molgenis || {}));    

    







    
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