js.biobank-connect.min.js Maven / Gradle / Ivy
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Show all versions of molgenis-ontology Show documentation
Plugin module containing SORTA (system for ontology-based re-coding and technical
annotation)
plugins.
(function($,molgenis,w){var restApi=new molgenis.RestClient();var nrItemsPerPage=10;molgenis.getTotalNumberOfItems=function(dataSetId){var number=0;var request={dataSetId:dataSetId,query:{pageSize:100000}};$.ajax({type:"POST",url:molgenis.adaptContextUrl()+"/allattributes",async:false,data:JSON.stringify(request),contentType:"application/json",success:function(data){number=data.searchHits.length}});return number};molgenis.createMatrixForDataItems=function(options){var request={dataSetId:options.dataSetId,queryString:options.queryText,query:{offset:options.page?options.page.start:0,pageSize:nrItemsPerPage,sort:options.sortRule}};$.ajax({type:"POST",url:molgenis.adaptContextUrl()+"/allattributes",async:false,data:JSON.stringify(request),contentType:"application/json",success:function(data,textStatus,request){if(data.searchHits){var searchHits=data.searchHits;var table=$("
").addClass("table table-bordered");options.container.find("table").remove();options.container.prepend(table);var body=$("");table.append(createTableHeader(options)).append(body);if(options.createTableRow===undefined||options.createTableRow===null){options.createTableRow=createTableRow}$.each(searchHits,function(){$(options.createTableRow($(this)[0]["columnValueMap"],table)).appendTo(body)});initPager(options,data.totalHitCount)}else{molgenis.createAlert([{message:"There is no dataset available!"}],"warning",$("#wizardForm"))}}});function initPager(options,totalHitCount){if(options.updatePager||options.container.find("#pager-"+options.dataSetId).length===0){options.updatePager=false;var tablePager=$("").attr("id","pager-"+options.dataSetId);options.container.find(".pagination").parents("div:eq(1)").remove();options.container.append(tablePager);tablePager.pager({nrItems:totalHitCount,nrItemsPerPage:nrItemsPerPage,onPageChange:function(page){options.page=page;molgenis.createMatrixForDataItems(options)}})}}function createTableHeader(options){var headerRow=$(""+options.tableHeaders[0]+" ").css("width",firstColumnWidth+"%").appendTo(headerRow);if(options.sortRule){if(options.sortRule.orders[0].direction=="ASC"){$('').appendTo(firstColumn)}else{$('').appendTo(firstColumn)}}else{$('').appendTo(firstColumn)}var columnWidth=(100-firstColumnWidth)/options.tableHeaders.length;$.each(options.tableHeaders,function(index,eachHeader){if(index>0){$("Message : ');items.push("Other user is currently running BiobankConnect using the same account, please be patient or login as another user! ");$("#wizardForm").html(items.join(""));setTimeout(function(){molgenis.ontologyMatcherRunning(callback)},5000)}else{var childElements=$("#wizardForm").data("childElements");$("#wizardForm").data("childElements",null);if(childElements!==null&&childElements!==undefined){$("#wizardForm").empty().append(childElements)}$("ul.pager a").on("click",function(e){e.preventDefault();if(!$(this).parent().hasClass("disabled")){$("#wizardForm").attr("action",$(this).attr("href")).submit()}return false});if(callback!==undefined&&callback!==null){callback()}}}})};molgenis.getFeatureFromIndex=function(feature,callback){$.ajax({type:"POST",url:molgenis.adaptContextUrl()+"/attribute",async:false,data:JSON.stringify(molgenis.hrefToId(feature.href)),contentType:"application/json",success:function(data,textStatus,request){$.each(data.searchHits,function(index,hit){callback(hit);return false})}})};molgenis.dataItemsTypeahead=function(dataSetId,query,response,approximate){$.ajax({type:"POST",url:molgenis.adaptContextUrl()+"/allattributes",async:false,data:JSON.stringify({dataSetId:dataSetId,queryString:query,approximate:(approximate!==undefined&&approximate!==null)}),contentType:"application/json",success:function(data,textStatus,request){var result=[];$.each(data.searchHits,function(index,hit){var value=hit.columnValueMap.name;if($.inArray(value,result)===-1){result.push(hit.columnValueMap)}});response(result)}})};molgenis.ontologyTermTypeahead=function(field,query,response){$.ajax({type:"POST",url:molgenis.adaptContextUrl()+"/ontologyterm",async:false,data:JSON.stringify({queryString:query}),contentType:"application/json",success:function(data,textStatus,request){var results=[];var uniqueOntologyTerms=[];$.each(data.searchHits,function(index,hit){var ontologyName=hit.columnValueMap.ontologyName;var ontologyTermSynonym=hit.columnValueMap.ontologyTermSynonym;var identifier=ontologyName===""?ontologyTermSynonym:ontologyName+":"+ontologyTermSynonym;hit.columnValueMap.identifier=identifier;if($.inArray(identifier,uniqueOntologyTerms)===-1){uniqueOntologyTerms.push(identifier);results.push(hit.columnValueMap)}});response(results)}})};molgenis.adaptContextUrl=function(){return molgenis.getContextUrl().replace(/biobankconnect$/g,"algorithm")};$(function(){var buttonGroup=$(".bwizard-buttons");$("#wizardForm").prepend(buttonGroup);buttonGroup.before("");$(".wizard-page").removeClass("well");$("div.wizard-page").css("min-height",300);$(document).keyup(function(e){if(e.which==27){$("div.modal").modal("hide")}})})}($,window.top.molgenis=window.top.molgenis||{},window.top));