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A Protobuf schema for capturing clinical phenotypes
// Generated by the protocol buffer compiler. DO NOT EDIT!
// source: base.proto
#include "base.pb.h"
#include
#include
#include
#include
#include
#include
#include
#include
#include
// @@protoc_insertion_point(includes)
#include
extern PROTOBUF_INTERNAL_EXPORT_google_2fprotobuf_2ftimestamp_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_Timestamp_google_2fprotobuf_2ftimestamp_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_Age_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<1> scc_info_AgeRange_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<2> scc_info_Evidence_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_ExternalReference_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_HgvsAllele_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<1> scc_info_HtsFile_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_IscnAllele_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_OntologyClass_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_Pedigree_Person_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<4> scc_info_PhenotypicFeature_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<1> scc_info_Procedure_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_Resource_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_SpdiAllele_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<1> scc_info_Update_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<5> scc_info_Variant_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_VcfAllele_base_2eproto;
namespace org {
namespace phenopackets {
namespace schema {
namespace v1 {
namespace core {
class MetaDataDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _MetaData_default_instance_;
class UpdateDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _Update_default_instance_;
class ResourceDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _Resource_default_instance_;
class OntologyClassDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _OntologyClass_default_instance_;
class PhenotypicFeatureDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
const ::org::phenopackets::schema::v1::core::Age* age_of_onset_;
const ::org::phenopackets::schema::v1::core::AgeRange* age_range_of_onset_;
const ::org::phenopackets::schema::v1::core::OntologyClass* class_of_onset_;
} _PhenotypicFeature_default_instance_;
class EvidenceDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _Evidence_default_instance_;
class ExternalReferenceDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _ExternalReference_default_instance_;
class IndividualDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
const ::org::phenopackets::schema::v1::core::Age* age_at_collection_;
const ::org::phenopackets::schema::v1::core::AgeRange* age_range_at_collection_;
} _Individual_default_instance_;
class BiosampleDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
const ::org::phenopackets::schema::v1::core::Age* age_of_individual_at_collection_;
const ::org::phenopackets::schema::v1::core::AgeRange* age_range_of_individual_at_collection_;
} _Biosample_default_instance_;
class ProcedureDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _Procedure_default_instance_;
class AgeDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _Age_default_instance_;
class AgeRangeDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _AgeRange_default_instance_;
class DiseaseDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
const ::org::phenopackets::schema::v1::core::Age* age_of_onset_;
const ::org::phenopackets::schema::v1::core::AgeRange* age_range_of_onset_;
const ::org::phenopackets::schema::v1::core::OntologyClass* class_of_onset_;
} _Disease_default_instance_;
class Pedigree_PersonDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _Pedigree_Person_default_instance_;
class PedigreeDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _Pedigree_default_instance_;
class HtsFile_IndividualToSampleIdentifiersEntry_DoNotUseDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse_default_instance_;
class HtsFileDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _HtsFile_default_instance_;
class GeneDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _Gene_default_instance_;
class VariantDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
const ::org::phenopackets::schema::v1::core::HgvsAllele* hgvs_allele_;
const ::org::phenopackets::schema::v1::core::VcfAllele* vcf_allele_;
const ::org::phenopackets::schema::v1::core::SpdiAllele* spdi_allele_;
const ::org::phenopackets::schema::v1::core::IscnAllele* iscn_allele_;
} _Variant_default_instance_;
class HgvsAlleleDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _HgvsAllele_default_instance_;
class VcfAlleleDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _VcfAllele_default_instance_;
class SpdiAlleleDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _SpdiAllele_default_instance_;
class IscnAlleleDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _IscnAllele_default_instance_;
} // namespace core
} // namespace v1
} // namespace schema
} // namespace phenopackets
} // namespace org
static void InitDefaultsscc_info_Age_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_Age_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::Age();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::Age::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_Age_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 0, InitDefaultsscc_info_Age_base_2eproto}, {}};
static void InitDefaultsscc_info_AgeRange_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_AgeRange_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::AgeRange();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::AgeRange::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<1> scc_info_AgeRange_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 1, InitDefaultsscc_info_AgeRange_base_2eproto}, {
&scc_info_Age_base_2eproto.base,}};
static void InitDefaultsscc_info_Biosample_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_Biosample_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::Biosample();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::Biosample::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<7> scc_info_Biosample_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 7, InitDefaultsscc_info_Biosample_base_2eproto}, {
&scc_info_OntologyClass_base_2eproto.base,
&scc_info_PhenotypicFeature_base_2eproto.base,
&scc_info_Age_base_2eproto.base,
&scc_info_AgeRange_base_2eproto.base,
&scc_info_Procedure_base_2eproto.base,
&scc_info_HtsFile_base_2eproto.base,
&scc_info_Variant_base_2eproto.base,}};
static void InitDefaultsscc_info_Disease_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_Disease_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::Disease();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::Disease::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<3> scc_info_Disease_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 3, InitDefaultsscc_info_Disease_base_2eproto}, {
&scc_info_OntologyClass_base_2eproto.base,
&scc_info_Age_base_2eproto.base,
&scc_info_AgeRange_base_2eproto.base,}};
static void InitDefaultsscc_info_Evidence_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_Evidence_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::Evidence();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::Evidence::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<2> scc_info_Evidence_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 2, InitDefaultsscc_info_Evidence_base_2eproto}, {
&scc_info_OntologyClass_base_2eproto.base,
&scc_info_ExternalReference_base_2eproto.base,}};
static void InitDefaultsscc_info_ExternalReference_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_ExternalReference_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::ExternalReference();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::ExternalReference::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_ExternalReference_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 0, InitDefaultsscc_info_ExternalReference_base_2eproto}, {}};
static void InitDefaultsscc_info_Gene_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_Gene_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::Gene();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::Gene::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_Gene_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 0, InitDefaultsscc_info_Gene_base_2eproto}, {}};
static void InitDefaultsscc_info_HgvsAllele_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_HgvsAllele_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::HgvsAllele();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::HgvsAllele::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_HgvsAllele_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 0, InitDefaultsscc_info_HgvsAllele_base_2eproto}, {}};
static void InitDefaultsscc_info_HtsFile_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_HtsFile_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::HtsFile();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::HtsFile::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<1> scc_info_HtsFile_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 1, InitDefaultsscc_info_HtsFile_base_2eproto}, {
&scc_info_HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse_base_2eproto.base,}};
static void InitDefaultsscc_info_HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse();
}
::org::phenopackets::schema::v1::core::HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 0, InitDefaultsscc_info_HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse_base_2eproto}, {}};
static void InitDefaultsscc_info_Individual_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_Individual_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::Individual();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::Individual::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<4> scc_info_Individual_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 4, InitDefaultsscc_info_Individual_base_2eproto}, {
&scc_info_Timestamp_google_2fprotobuf_2ftimestamp_2eproto.base,
&scc_info_Age_base_2eproto.base,
&scc_info_AgeRange_base_2eproto.base,
&scc_info_OntologyClass_base_2eproto.base,}};
static void InitDefaultsscc_info_IscnAllele_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_IscnAllele_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::IscnAllele();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::IscnAllele::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_IscnAllele_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 0, InitDefaultsscc_info_IscnAllele_base_2eproto}, {}};
static void InitDefaultsscc_info_MetaData_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_MetaData_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::MetaData();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::MetaData::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<4> scc_info_MetaData_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 4, InitDefaultsscc_info_MetaData_base_2eproto}, {
&scc_info_Timestamp_google_2fprotobuf_2ftimestamp_2eproto.base,
&scc_info_Resource_base_2eproto.base,
&scc_info_Update_base_2eproto.base,
&scc_info_ExternalReference_base_2eproto.base,}};
static void InitDefaultsscc_info_OntologyClass_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::OntologyClass();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::OntologyClass::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_OntologyClass_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 0, InitDefaultsscc_info_OntologyClass_base_2eproto}, {}};
static void InitDefaultsscc_info_Pedigree_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_Pedigree_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::Pedigree();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::Pedigree::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<1> scc_info_Pedigree_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 1, InitDefaultsscc_info_Pedigree_base_2eproto}, {
&scc_info_Pedigree_Person_base_2eproto.base,}};
static void InitDefaultsscc_info_Pedigree_Person_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_Pedigree_Person_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::Pedigree_Person();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::Pedigree_Person::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_Pedigree_Person_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 0, InitDefaultsscc_info_Pedigree_Person_base_2eproto}, {}};
static void InitDefaultsscc_info_PhenotypicFeature_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_PhenotypicFeature_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::PhenotypicFeature();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::PhenotypicFeature::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<4> scc_info_PhenotypicFeature_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 4, InitDefaultsscc_info_PhenotypicFeature_base_2eproto}, {
&scc_info_OntologyClass_base_2eproto.base,
&scc_info_Age_base_2eproto.base,
&scc_info_AgeRange_base_2eproto.base,
&scc_info_Evidence_base_2eproto.base,}};
static void InitDefaultsscc_info_Procedure_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_Procedure_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::Procedure();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::Procedure::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<1> scc_info_Procedure_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 1, InitDefaultsscc_info_Procedure_base_2eproto}, {
&scc_info_OntologyClass_base_2eproto.base,}};
static void InitDefaultsscc_info_Resource_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_Resource_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::Resource();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::Resource::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_Resource_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 0, InitDefaultsscc_info_Resource_base_2eproto}, {}};
static void InitDefaultsscc_info_SpdiAllele_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_SpdiAllele_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::SpdiAllele();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::SpdiAllele::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_SpdiAllele_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 0, InitDefaultsscc_info_SpdiAllele_base_2eproto}, {}};
static void InitDefaultsscc_info_Update_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_Update_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::Update();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::Update::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<1> scc_info_Update_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 1, InitDefaultsscc_info_Update_base_2eproto}, {
&scc_info_Timestamp_google_2fprotobuf_2ftimestamp_2eproto.base,}};
static void InitDefaultsscc_info_Variant_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_Variant_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::Variant();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::Variant::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<5> scc_info_Variant_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 5, InitDefaultsscc_info_Variant_base_2eproto}, {
&scc_info_HgvsAllele_base_2eproto.base,
&scc_info_VcfAllele_base_2eproto.base,
&scc_info_SpdiAllele_base_2eproto.base,
&scc_info_IscnAllele_base_2eproto.base,
&scc_info_OntologyClass_base_2eproto.base,}};
static void InitDefaultsscc_info_VcfAllele_base_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::core::_VcfAllele_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::core::VcfAllele();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::core::VcfAllele::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_VcfAllele_base_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 0, InitDefaultsscc_info_VcfAllele_base_2eproto}, {}};
static ::PROTOBUF_NAMESPACE_ID::Metadata file_level_metadata_base_2eproto[23];
static const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor* file_level_enum_descriptors_base_2eproto[4];
static constexpr ::PROTOBUF_NAMESPACE_ID::ServiceDescriptor const** file_level_service_descriptors_base_2eproto = nullptr;
const ::PROTOBUF_NAMESPACE_ID::uint32 TableStruct_base_2eproto::offsets[] PROTOBUF_SECTION_VARIABLE(protodesc_cold) = {
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::MetaData, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::MetaData, created_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::MetaData, created_by_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::MetaData, submitted_by_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::MetaData, resources_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::MetaData, updates_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::MetaData, phenopacket_schema_version_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::MetaData, external_references_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Update, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Update, timestamp_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Update, updated_by_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Update, comment_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Resource, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Resource, id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Resource, name_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Resource, url_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Resource, version_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Resource, namespace_prefix_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Resource, iri_prefix_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::OntologyClass, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::OntologyClass, id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::OntologyClass, label_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::PhenotypicFeature, _internal_metadata_),
~0u, // no _extensions_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::PhenotypicFeature, _oneof_case_[0]),
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::PhenotypicFeature, description_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::PhenotypicFeature, type_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::PhenotypicFeature, negated_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::PhenotypicFeature, severity_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::PhenotypicFeature, modifiers_),
offsetof(::org::phenopackets::schema::v1::core::PhenotypicFeatureDefaultTypeInternal, age_of_onset_),
offsetof(::org::phenopackets::schema::v1::core::PhenotypicFeatureDefaultTypeInternal, age_range_of_onset_),
offsetof(::org::phenopackets::schema::v1::core::PhenotypicFeatureDefaultTypeInternal, class_of_onset_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::PhenotypicFeature, evidence_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::PhenotypicFeature, onset_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Evidence, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Evidence, evidence_code_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Evidence, reference_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::ExternalReference, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::ExternalReference, id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::ExternalReference, description_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Individual, _internal_metadata_),
~0u, // no _extensions_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Individual, _oneof_case_[0]),
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Individual, id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Individual, alternate_ids_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Individual, date_of_birth_),
offsetof(::org::phenopackets::schema::v1::core::IndividualDefaultTypeInternal, age_at_collection_),
offsetof(::org::phenopackets::schema::v1::core::IndividualDefaultTypeInternal, age_range_at_collection_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Individual, sex_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Individual, karyotypic_sex_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Individual, taxonomy_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Individual, age_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, _internal_metadata_),
~0u, // no _extensions_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, _oneof_case_[0]),
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, individual_id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, description_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, sampled_tissue_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, phenotypic_features_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, taxonomy_),
offsetof(::org::phenopackets::schema::v1::core::BiosampleDefaultTypeInternal, age_of_individual_at_collection_),
offsetof(::org::phenopackets::schema::v1::core::BiosampleDefaultTypeInternal, age_range_of_individual_at_collection_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, histological_diagnosis_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, tumor_progression_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, tumor_grade_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, diagnostic_markers_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, procedure_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, hts_files_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, variants_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, is_control_sample_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Biosample, individual_age_at_collection_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Procedure, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Procedure, code_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Procedure, body_site_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Age, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Age, age_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::AgeRange, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::AgeRange, start_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::AgeRange, end_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Disease, _internal_metadata_),
~0u, // no _extensions_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Disease, _oneof_case_[0]),
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Disease, term_),
offsetof(::org::phenopackets::schema::v1::core::DiseaseDefaultTypeInternal, age_of_onset_),
offsetof(::org::phenopackets::schema::v1::core::DiseaseDefaultTypeInternal, age_range_of_onset_),
offsetof(::org::phenopackets::schema::v1::core::DiseaseDefaultTypeInternal, class_of_onset_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Disease, tumor_stage_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Disease, onset_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Pedigree_Person, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Pedigree_Person, family_id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Pedigree_Person, individual_id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Pedigree_Person, paternal_id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Pedigree_Person, maternal_id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Pedigree_Person, sex_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Pedigree_Person, affected_status_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Pedigree, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Pedigree, persons_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse, _has_bits_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse, key_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse, value_),
0,
1,
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::HtsFile, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::HtsFile, uri_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::HtsFile, description_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::HtsFile, hts_format_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::HtsFile, genome_assembly_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::HtsFile, individual_to_sample_identifiers_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Gene, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Gene, id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Gene, alternate_ids_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Gene, symbol_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Variant, _internal_metadata_),
~0u, // no _extensions_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Variant, _oneof_case_[0]),
~0u, // no _weak_field_map_
offsetof(::org::phenopackets::schema::v1::core::VariantDefaultTypeInternal, hgvs_allele_),
offsetof(::org::phenopackets::schema::v1::core::VariantDefaultTypeInternal, vcf_allele_),
offsetof(::org::phenopackets::schema::v1::core::VariantDefaultTypeInternal, spdi_allele_),
offsetof(::org::phenopackets::schema::v1::core::VariantDefaultTypeInternal, iscn_allele_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Variant, zygosity_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::Variant, allele_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::HgvsAllele, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::HgvsAllele, id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::HgvsAllele, hgvs_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::VcfAllele, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::VcfAllele, vcf_version_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::VcfAllele, genome_assembly_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::VcfAllele, id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::VcfAllele, chr_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::VcfAllele, pos_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::VcfAllele, ref_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::VcfAllele, alt_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::VcfAllele, info_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::SpdiAllele, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::SpdiAllele, id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::SpdiAllele, seq_id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::SpdiAllele, position_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::SpdiAllele, deleted_sequence_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::SpdiAllele, inserted_sequence_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::IscnAllele, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::IscnAllele, id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::core::IscnAllele, iscn_),
};
static const ::PROTOBUF_NAMESPACE_ID::internal::MigrationSchema schemas[] PROTOBUF_SECTION_VARIABLE(protodesc_cold) = {
{ 0, -1, sizeof(::org::phenopackets::schema::v1::core::MetaData)},
{ 12, -1, sizeof(::org::phenopackets::schema::v1::core::Update)},
{ 20, -1, sizeof(::org::phenopackets::schema::v1::core::Resource)},
{ 31, -1, sizeof(::org::phenopackets::schema::v1::core::OntologyClass)},
{ 38, -1, sizeof(::org::phenopackets::schema::v1::core::PhenotypicFeature)},
{ 53, -1, sizeof(::org::phenopackets::schema::v1::core::Evidence)},
{ 60, -1, sizeof(::org::phenopackets::schema::v1::core::ExternalReference)},
{ 67, -1, sizeof(::org::phenopackets::schema::v1::core::Individual)},
{ 81, -1, sizeof(::org::phenopackets::schema::v1::core::Biosample)},
{ 103, -1, sizeof(::org::phenopackets::schema::v1::core::Procedure)},
{ 110, -1, sizeof(::org::phenopackets::schema::v1::core::Age)},
{ 116, -1, sizeof(::org::phenopackets::schema::v1::core::AgeRange)},
{ 123, -1, sizeof(::org::phenopackets::schema::v1::core::Disease)},
{ 134, -1, sizeof(::org::phenopackets::schema::v1::core::Pedigree_Person)},
{ 145, -1, sizeof(::org::phenopackets::schema::v1::core::Pedigree)},
{ 151, 158, sizeof(::org::phenopackets::schema::v1::core::HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse)},
{ 160, -1, sizeof(::org::phenopackets::schema::v1::core::HtsFile)},
{ 170, -1, sizeof(::org::phenopackets::schema::v1::core::Gene)},
{ 178, -1, sizeof(::org::phenopackets::schema::v1::core::Variant)},
{ 189, -1, sizeof(::org::phenopackets::schema::v1::core::HgvsAllele)},
{ 196, -1, sizeof(::org::phenopackets::schema::v1::core::VcfAllele)},
{ 209, -1, sizeof(::org::phenopackets::schema::v1::core::SpdiAllele)},
{ 219, -1, sizeof(::org::phenopackets::schema::v1::core::IscnAllele)},
};
static ::PROTOBUF_NAMESPACE_ID::Message const * const file_default_instances[] = {
reinterpret_cast(&::org::phenopackets::schema::v1::core::_MetaData_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_Update_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_Resource_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_PhenotypicFeature_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_Evidence_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_ExternalReference_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_Individual_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_Biosample_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_Procedure_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_Age_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_AgeRange_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_Disease_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_Pedigree_Person_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_Pedigree_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_HtsFile_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_Gene_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_Variant_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_HgvsAllele_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_VcfAllele_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_SpdiAllele_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::core::_IscnAllele_default_instance_),
};
const char descriptor_table_protodef_base_2eproto[] =
"\n\nbase.proto\022\037org.phenopackets.schema.v1"
".core\032\037google/protobuf/timestamp.proto\032\027"
"validate/validate.proto\"\316\002\n\010MetaData\022+\n\007"
"created\030\001 \001(\0132\032.google.protobuf.Timestam"
"p\022\022\n\ncreated_by\030\002 \001(\t\022\024\n\014submitted_by\030\003 "
"\001(\t\022<\n\tresources\030\004 \003(\0132).org.phenopacket"
"s.schema.v1.core.Resource\0228\n\007updates\030\005 \003"
"(\0132\'.org.phenopackets.schema.v1.core.Upd"
"ate\022\"\n\032phenopacket_schema_version\030\006 \001(\t\022"
"O\n\023external_references\030\007 \003(\01322.org.pheno"
"packets.schema.v1.core.ExternalReference"
"\"f\n\006Update\0227\n\ttimestamp\030\001 \001(\0132\032.google.p"
"rotobuf.TimestampB\010\372B\005\262\001\002\010\001\022\022\n\nupdated_b"
"y\030\002 \001(\t\022\017\n\007comment\030\003 \001(\t\"p\n\010Resource\022\n\n\002"
"id\030\001 \001(\t\022\014\n\004name\030\002 \001(\t\022\013\n\003url\030\003 \001(\t\022\017\n\007v"
"ersion\030\004 \001(\t\022\030\n\020namespace_prefix\030\005 \001(\t\022\022"
"\n\niri_prefix\030\006 \001(\t\"*\n\rOntologyClass\022\n\n\002i"
"d\030\001 \001(\t\022\r\n\005label\030\002 \001(\t\"\223\004\n\021PhenotypicFea"
"ture\022\023\n\013description\030\001 \001(\t\022<\n\004type\030\002 \001(\0132"
"..org.phenopackets.schema.v1.core.Ontolo"
"gyClass\022\017\n\007negated\030\003 \001(\010\022@\n\010severity\030\004 \001"
"(\0132..org.phenopackets.schema.v1.core.Ont"
"ologyClass\022A\n\tmodifiers\030\005 \003(\0132..org.phen"
"opackets.schema.v1.core.OntologyClass\022<\n"
"\014age_of_onset\030\006 \001(\0132$.org.phenopackets.s"
"chema.v1.core.AgeH\000\022G\n\022age_range_of_onse"
"t\030\007 \001(\0132).org.phenopackets.schema.v1.cor"
"e.AgeRangeH\000\022H\n\016class_of_onset\030\t \001(\0132..o"
"rg.phenopackets.schema.v1.core.OntologyC"
"lassH\000\022;\n\010evidence\030\n \003(\0132).org.phenopack"
"ets.schema.v1.core.EvidenceB\007\n\005onset\"\230\001\n"
"\010Evidence\022E\n\revidence_code\030\001 \001(\0132..org.p"
"henopackets.schema.v1.core.OntologyClass"
"\022E\n\treference\030\002 \001(\01322.org.phenopackets.s"
"chema.v1.core.ExternalReference\"4\n\021Exter"
"nalReference\022\n\n\002id\030\001 \001(\t\022\023\n\013description\030"
"\002 \001(\t\"\267\003\n\nIndividual\022\n\n\002id\030\001 \001(\t\022\025\n\ralte"
"rnate_ids\030\002 \003(\t\0221\n\rdate_of_birth\030\003 \001(\0132\032"
".google.protobuf.Timestamp\022A\n\021age_at_col"
"lection\030\004 \001(\0132$.org.phenopackets.schema."
"v1.core.AgeH\000\022L\n\027age_range_at_collection"
"\030\005 \001(\0132).org.phenopackets.schema.v1.core"
".AgeRangeH\000\0221\n\003sex\030\006 \001(\0162$.org.phenopack"
"ets.schema.v1.core.Sex\022F\n\016karyotypic_sex"
"\030\007 \001(\0162..org.phenopackets.schema.v1.core"
".KaryotypicSex\022@\n\010taxonomy\030\010 \001(\0132..org.p"
"henopackets.schema.v1.core.OntologyClass"
"B\005\n\003age\"\352\007\n\tBiosample\022\n\n\002id\030\001 \001(\t\022\025\n\rind"
"ividual_id\030\002 \001(\t\022\023\n\013description\030\003 \001(\t\022F\n"
"\016sampled_tissue\030\004 \001(\0132..org.phenopackets"
".schema.v1.core.OntologyClass\022O\n\023phenoty"
"pic_features\030\005 \003(\01322.org.phenopackets.sc"
"hema.v1.core.PhenotypicFeature\022@\n\010taxono"
"my\030\006 \001(\0132..org.phenopackets.schema.v1.co"
"re.OntologyClass\022O\n\037age_of_individual_at"
"_collection\030\007 \001(\0132$.org.phenopackets.sch"
"ema.v1.core.AgeH\000\022Z\n%age_range_of_indivi"
"dual_at_collection\030\010 \001(\0132).org.phenopack"
"ets.schema.v1.core.AgeRangeH\000\022N\n\026histolo"
"gical_diagnosis\030\t \001(\0132..org.phenopackets"
".schema.v1.core.OntologyClass\022I\n\021tumor_p"
"rogression\030\n \001(\0132..org.phenopackets.sche"
"ma.v1.core.OntologyClass\022C\n\013tumor_grade\030"
"\013 \001(\0132..org.phenopackets.schema.v1.core."
"OntologyClass\022J\n\022diagnostic_markers\030\014 \003("
"\0132..org.phenopackets.schema.v1.core.Onto"
"logyClass\022=\n\tprocedure\030\r \001(\0132*.org.pheno"
"packets.schema.v1.core.Procedure\022;\n\thts_"
"files\030\016 \003(\0132(.org.phenopackets.schema.v1"
".core.HtsFile\022:\n\010variants\030\017 \003(\0132(.org.ph"
"enopackets.schema.v1.core.Variant\022\031\n\021is_"
"control_sample\030\020 \001(\010B\036\n\034individual_age_a"
"t_collection\"\214\001\n\tProcedure\022<\n\004code\030\001 \001(\013"
"2..org.phenopackets.schema.v1.core.Ontol"
"ogyClass\022A\n\tbody_site\030\002 \001(\0132..org.phenop"
"ackets.schema.v1.core.OntologyClass\"\022\n\003A"
"ge\022\013\n\003age\030\001 \001(\t\"r\n\010AgeRange\0223\n\005start\030\001 \001"
"(\0132$.org.phenopackets.schema.v1.core.Age"
"\0221\n\003end\030\002 \001(\0132$.org.phenopackets.schema."
"v1.core.Age\"\346\002\n\007Disease\022<\n\004term\030\001 \001(\0132.."
"org.phenopackets.schema.v1.core.Ontology"
"Class\022<\n\014age_of_onset\030\002 \001(\0132$.org.phenop"
"ackets.schema.v1.core.AgeH\000\022G\n\022age_range"
"_of_onset\030\003 \001(\0132).org.phenopackets.schem"
"a.v1.core.AgeRangeH\000\022H\n\016class_of_onset\030\004"
" \001(\0132..org.phenopackets.schema.v1.core.O"
"ntologyClassH\000\022C\n\013tumor_stage\030\005 \003(\0132..or"
"g.phenopackets.schema.v1.core.OntologyCl"
"assB\007\n\005onset\"\366\002\n\010Pedigree\022A\n\007persons\030\001 \003"
"(\01320.org.phenopackets.schema.v1.core.Ped"
"igree.Person\032\246\002\n\006Person\022\021\n\tfamily_id\030\001 \001"
"(\t\022\025\n\rindividual_id\030\002 \001(\t\022\023\n\013paternal_id"
"\030\003 \001(\t\022\023\n\013maternal_id\030\004 \001(\t\0221\n\003sex\030\005 \001(\016"
"2$.org.phenopackets.schema.v1.core.Sex\022X"
"\n\017affected_status\030\006 \001(\0162\?.org.phenopacke"
"ts.schema.v1.core.Pedigree.Person.Affect"
"edStatus\";\n\016AffectedStatus\022\013\n\007MISSING\020\000\022"
"\016\n\nUNAFFECTED\020\001\022\014\n\010AFFECTED\020\002\"\233\003\n\007HtsFil"
"e\022\013\n\003uri\030\001 \001(\t\022\023\n\013description\030\002 \001(\t\022F\n\nh"
"ts_format\030\003 \001(\01622.org.phenopackets.schem"
"a.v1.core.HtsFile.HtsFormat\022\027\n\017genome_as"
"sembly\030\004 \001(\t\022u\n individual_to_sample_ide"
"ntifiers\030\005 \003(\0132K.org.phenopackets.schema"
".v1.core.HtsFile.IndividualToSampleIdent"
"ifiersEntry\032D\n\"IndividualToSampleIdentif"
"iersEntry\022\013\n\003key\030\001 \001(\t\022\r\n\005value\030\002 \001(\t:\0028"
"\001\"P\n\tHtsFormat\022\013\n\007UNKNOWN\020\000\022\007\n\003SAM\020\001\022\007\n\003"
"BAM\020\002\022\010\n\004CRAM\020\003\022\007\n\003VCF\020\004\022\007\n\003BCF\020\005\022\010\n\004GVC"
"F\020\006\"9\n\004Gene\022\n\n\002id\030\001 \001(\t\022\025\n\ralternate_ids"
"\030\002 \003(\t\022\016\n\006symbol\030\003 \001(\t\"\343\002\n\007Variant\022B\n\013hg"
"vs_allele\030\002 \001(\0132+.org.phenopackets.schem"
"a.v1.core.HgvsAlleleH\000\022@\n\nvcf_allele\030\003 \001"
"(\0132*.org.phenopackets.schema.v1.core.Vcf"
"AlleleH\000\022B\n\013spdi_allele\030\004 \001(\0132+.org.phen"
"opackets.schema.v1.core.SpdiAlleleH\000\022B\n\013"
"iscn_allele\030\005 \001(\0132+.org.phenopackets.sch"
"ema.v1.core.IscnAlleleH\000\022@\n\010zygosity\030\006 \001"
"(\0132..org.phenopackets.schema.v1.core.Ont"
"ologyClassB\010\n\006allele\"&\n\nHgvsAllele\022\n\n\002id"
"\030\001 \001(\t\022\014\n\004hgvs\030\002 \001(\t\"\207\001\n\tVcfAllele\022\023\n\013vc"
"f_version\030\001 \001(\t\022\027\n\017genome_assembly\030\002 \001(\t"
"\022\n\n\002id\030\003 \001(\t\022\013\n\003chr\030\004 \001(\t\022\013\n\003pos\030\005 \001(\005\022\013"
"\n\003ref\030\006 \001(\t\022\013\n\003alt\030\007 \001(\t\022\014\n\004info\030\010 \001(\t\"o"
"\n\nSpdiAllele\022\n\n\002id\030\001 \001(\t\022\016\n\006seq_id\030\002 \001(\t"
"\022\020\n\010position\030\003 \001(\005\022\030\n\020deleted_sequence\030\004"
" \001(\t\022\031\n\021inserted_sequence\030\005 \001(\t\"&\n\nIscnA"
"llele\022\n\n\002id\030\001 \001(\t\022\014\n\004iscn\030\002 \001(\t*;\n\003Sex\022\017"
"\n\013UNKNOWN_SEX\020\000\022\n\n\006FEMALE\020\001\022\010\n\004MALE\020\002\022\r\n"
"\tOTHER_SEX\020\003*\214\001\n\rKaryotypicSex\022\025\n\021UNKNOW"
"N_KARYOTYPE\020\000\022\006\n\002XX\020\001\022\006\n\002XY\020\002\022\006\n\002XO\020\003\022\007\n"
"\003XXY\020\004\022\007\n\003XXX\020\005\022\010\n\004XXYY\020\006\022\010\n\004XXXY\020\007\022\010\n\004X"
"XXX\020\010\022\007\n\003XYY\020\t\022\023\n\017OTHER_KARYOTYPE\020\nB#\n\037o"
"rg.phenopackets.schema.v1.coreP\001b\006proto3"
;
static const ::PROTOBUF_NAMESPACE_ID::internal::DescriptorTable*const descriptor_table_base_2eproto_deps[2] = {
&::descriptor_table_google_2fprotobuf_2ftimestamp_2eproto,
&::descriptor_table_validate_2fvalidate_2eproto,
};
static ::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase*const descriptor_table_base_2eproto_sccs[23] = {
&scc_info_Age_base_2eproto.base,
&scc_info_AgeRange_base_2eproto.base,
&scc_info_Biosample_base_2eproto.base,
&scc_info_Disease_base_2eproto.base,
&scc_info_Evidence_base_2eproto.base,
&scc_info_ExternalReference_base_2eproto.base,
&scc_info_Gene_base_2eproto.base,
&scc_info_HgvsAllele_base_2eproto.base,
&scc_info_HtsFile_base_2eproto.base,
&scc_info_HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse_base_2eproto.base,
&scc_info_Individual_base_2eproto.base,
&scc_info_IscnAllele_base_2eproto.base,
&scc_info_MetaData_base_2eproto.base,
&scc_info_OntologyClass_base_2eproto.base,
&scc_info_Pedigree_base_2eproto.base,
&scc_info_Pedigree_Person_base_2eproto.base,
&scc_info_PhenotypicFeature_base_2eproto.base,
&scc_info_Procedure_base_2eproto.base,
&scc_info_Resource_base_2eproto.base,
&scc_info_SpdiAllele_base_2eproto.base,
&scc_info_Update_base_2eproto.base,
&scc_info_Variant_base_2eproto.base,
&scc_info_VcfAllele_base_2eproto.base,
};
static ::PROTOBUF_NAMESPACE_ID::internal::once_flag descriptor_table_base_2eproto_once;
static bool descriptor_table_base_2eproto_initialized = false;
const ::PROTOBUF_NAMESPACE_ID::internal::DescriptorTable descriptor_table_base_2eproto = {
&descriptor_table_base_2eproto_initialized, descriptor_table_protodef_base_2eproto, "base.proto", 5320,
&descriptor_table_base_2eproto_once, descriptor_table_base_2eproto_sccs, descriptor_table_base_2eproto_deps, 23, 2,
schemas, file_default_instances, TableStruct_base_2eproto::offsets,
file_level_metadata_base_2eproto, 23, file_level_enum_descriptors_base_2eproto, file_level_service_descriptors_base_2eproto,
};
// Force running AddDescriptors() at dynamic initialization time.
static bool dynamic_init_dummy_base_2eproto = ( ::PROTOBUF_NAMESPACE_ID::internal::AddDescriptors(&descriptor_table_base_2eproto), true);
namespace org {
namespace phenopackets {
namespace schema {
namespace v1 {
namespace core {
const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor* Pedigree_Person_AffectedStatus_descriptor() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&descriptor_table_base_2eproto);
return file_level_enum_descriptors_base_2eproto[0];
}
bool Pedigree_Person_AffectedStatus_IsValid(int value) {
switch (value) {
case 0:
case 1:
case 2:
return true;
default:
return false;
}
}
#if (__cplusplus < 201703) && (!defined(_MSC_VER) || _MSC_VER >= 1900)
constexpr Pedigree_Person_AffectedStatus Pedigree_Person::MISSING;
constexpr Pedigree_Person_AffectedStatus Pedigree_Person::UNAFFECTED;
constexpr Pedigree_Person_AffectedStatus Pedigree_Person::AFFECTED;
constexpr Pedigree_Person_AffectedStatus Pedigree_Person::AffectedStatus_MIN;
constexpr Pedigree_Person_AffectedStatus Pedigree_Person::AffectedStatus_MAX;
constexpr int Pedigree_Person::AffectedStatus_ARRAYSIZE;
#endif // (__cplusplus < 201703) && (!defined(_MSC_VER) || _MSC_VER >= 1900)
const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor* HtsFile_HtsFormat_descriptor() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&descriptor_table_base_2eproto);
return file_level_enum_descriptors_base_2eproto[1];
}
bool HtsFile_HtsFormat_IsValid(int value) {
switch (value) {
case 0:
case 1:
case 2:
case 3:
case 4:
case 5:
case 6:
return true;
default:
return false;
}
}
#if (__cplusplus < 201703) && (!defined(_MSC_VER) || _MSC_VER >= 1900)
constexpr HtsFile_HtsFormat HtsFile::UNKNOWN;
constexpr HtsFile_HtsFormat HtsFile::SAM;
constexpr HtsFile_HtsFormat HtsFile::BAM;
constexpr HtsFile_HtsFormat HtsFile::CRAM;
constexpr HtsFile_HtsFormat HtsFile::VCF;
constexpr HtsFile_HtsFormat HtsFile::BCF;
constexpr HtsFile_HtsFormat HtsFile::GVCF;
constexpr HtsFile_HtsFormat HtsFile::HtsFormat_MIN;
constexpr HtsFile_HtsFormat HtsFile::HtsFormat_MAX;
constexpr int HtsFile::HtsFormat_ARRAYSIZE;
#endif // (__cplusplus < 201703) && (!defined(_MSC_VER) || _MSC_VER >= 1900)
const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor* Sex_descriptor() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&descriptor_table_base_2eproto);
return file_level_enum_descriptors_base_2eproto[2];
}
bool Sex_IsValid(int value) {
switch (value) {
case 0:
case 1:
case 2:
case 3:
return true;
default:
return false;
}
}
const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor* KaryotypicSex_descriptor() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&descriptor_table_base_2eproto);
return file_level_enum_descriptors_base_2eproto[3];
}
bool KaryotypicSex_IsValid(int value) {
switch (value) {
case 0:
case 1:
case 2:
case 3:
case 4:
case 5:
case 6:
case 7:
case 8:
case 9:
case 10:
return true;
default:
return false;
}
}
// ===================================================================
void MetaData::InitAsDefaultInstance() {
::org::phenopackets::schema::v1::core::_MetaData_default_instance_._instance.get_mutable()->created_ = const_cast< PROTOBUF_NAMESPACE_ID::Timestamp*>(
PROTOBUF_NAMESPACE_ID::Timestamp::internal_default_instance());
}
class MetaData::HasBitSetters {
public:
static const PROTOBUF_NAMESPACE_ID::Timestamp& created(const MetaData* msg);
};
const PROTOBUF_NAMESPACE_ID::Timestamp&
MetaData::HasBitSetters::created(const MetaData* msg) {
return *msg->created_;
}
void MetaData::clear_created() {
if (GetArenaNoVirtual() == nullptr && created_ != nullptr) {
delete created_;
}
created_ = nullptr;
}
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int MetaData::kCreatedFieldNumber;
const int MetaData::kCreatedByFieldNumber;
const int MetaData::kSubmittedByFieldNumber;
const int MetaData::kResourcesFieldNumber;
const int MetaData::kUpdatesFieldNumber;
const int MetaData::kPhenopacketSchemaVersionFieldNumber;
const int MetaData::kExternalReferencesFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
MetaData::MetaData()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.MetaData)
}
MetaData::MetaData(const MetaData& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr),
resources_(from.resources_),
updates_(from.updates_),
external_references_(from.external_references_) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
created_by_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.created_by().size() > 0) {
created_by_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.created_by_);
}
submitted_by_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.submitted_by().size() > 0) {
submitted_by_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.submitted_by_);
}
phenopacket_schema_version_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.phenopacket_schema_version().size() > 0) {
phenopacket_schema_version_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.phenopacket_schema_version_);
}
if (from.has_created()) {
created_ = new PROTOBUF_NAMESPACE_ID::Timestamp(*from.created_);
} else {
created_ = nullptr;
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.MetaData)
}
void MetaData::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_MetaData_base_2eproto.base);
created_by_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
submitted_by_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
phenopacket_schema_version_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
created_ = nullptr;
}
MetaData::~MetaData() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.MetaData)
SharedDtor();
}
void MetaData::SharedDtor() {
created_by_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
submitted_by_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
phenopacket_schema_version_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (this != internal_default_instance()) delete created_;
}
void MetaData::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const MetaData& MetaData::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_MetaData_base_2eproto.base);
return *internal_default_instance();
}
void MetaData::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.MetaData)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
resources_.Clear();
updates_.Clear();
external_references_.Clear();
created_by_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
submitted_by_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
phenopacket_schema_version_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (GetArenaNoVirtual() == nullptr && created_ != nullptr) {
delete created_;
}
created_ = nullptr;
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* MetaData::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// .google.protobuf.Timestamp created = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ctx->ParseMessage(mutable_created(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// string created_by = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_created_by(), ptr, ctx, "org.phenopackets.schema.v1.core.MetaData.created_by");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string submitted_by = 3;
case 3:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 26)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_submitted_by(), ptr, ctx, "org.phenopackets.schema.v1.core.MetaData.submitted_by");
CHK_(ptr);
} else goto handle_unusual;
continue;
// repeated .org.phenopackets.schema.v1.core.Resource resources = 4;
case 4:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 34)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(add_resources(), ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 34);
} else goto handle_unusual;
continue;
// repeated .org.phenopackets.schema.v1.core.Update updates = 5;
case 5:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 42)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(add_updates(), ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 42);
} else goto handle_unusual;
continue;
// string phenopacket_schema_version = 6;
case 6:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 50)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_phenopacket_schema_version(), ptr, ctx, "org.phenopackets.schema.v1.core.MetaData.phenopacket_schema_version");
CHK_(ptr);
} else goto handle_unusual;
continue;
// repeated .org.phenopackets.schema.v1.core.ExternalReference external_references = 7;
case 7:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 58)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(add_external_references(), ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 58);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool MetaData::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.MetaData)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// .google.protobuf.Timestamp created = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_created()));
} else {
goto handle_unusual;
}
break;
}
// string created_by = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_created_by()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->created_by().data(), static_cast(this->created_by().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.MetaData.created_by"));
} else {
goto handle_unusual;
}
break;
}
// string submitted_by = 3;
case 3: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (26 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_submitted_by()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->submitted_by().data(), static_cast(this->submitted_by().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.MetaData.submitted_by"));
} else {
goto handle_unusual;
}
break;
}
// repeated .org.phenopackets.schema.v1.core.Resource resources = 4;
case 4: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (34 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, add_resources()));
} else {
goto handle_unusual;
}
break;
}
// repeated .org.phenopackets.schema.v1.core.Update updates = 5;
case 5: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (42 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, add_updates()));
} else {
goto handle_unusual;
}
break;
}
// string phenopacket_schema_version = 6;
case 6: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (50 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_phenopacket_schema_version()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->phenopacket_schema_version().data(), static_cast(this->phenopacket_schema_version().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.MetaData.phenopacket_schema_version"));
} else {
goto handle_unusual;
}
break;
}
// repeated .org.phenopackets.schema.v1.core.ExternalReference external_references = 7;
case 7: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (58 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, add_external_references()));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.MetaData)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.MetaData)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void MetaData::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.MetaData)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .google.protobuf.Timestamp created = 1;
if (this->has_created()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
1, HasBitSetters::created(this), output);
}
// string created_by = 2;
if (this->created_by().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->created_by().data(), static_cast(this->created_by().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.MetaData.created_by");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
2, this->created_by(), output);
}
// string submitted_by = 3;
if (this->submitted_by().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->submitted_by().data(), static_cast(this->submitted_by().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.MetaData.submitted_by");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
3, this->submitted_by(), output);
}
// repeated .org.phenopackets.schema.v1.core.Resource resources = 4;
for (unsigned int i = 0,
n = static_cast(this->resources_size()); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
4,
this->resources(static_cast(i)),
output);
}
// repeated .org.phenopackets.schema.v1.core.Update updates = 5;
for (unsigned int i = 0,
n = static_cast(this->updates_size()); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
5,
this->updates(static_cast(i)),
output);
}
// string phenopacket_schema_version = 6;
if (this->phenopacket_schema_version().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->phenopacket_schema_version().data(), static_cast(this->phenopacket_schema_version().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.MetaData.phenopacket_schema_version");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
6, this->phenopacket_schema_version(), output);
}
// repeated .org.phenopackets.schema.v1.core.ExternalReference external_references = 7;
for (unsigned int i = 0,
n = static_cast(this->external_references_size()); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
7,
this->external_references(static_cast(i)),
output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.MetaData)
}
::PROTOBUF_NAMESPACE_ID::uint8* MetaData::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.MetaData)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .google.protobuf.Timestamp created = 1;
if (this->has_created()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
1, HasBitSetters::created(this), target);
}
// string created_by = 2;
if (this->created_by().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->created_by().data(), static_cast(this->created_by().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.MetaData.created_by");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
2, this->created_by(), target);
}
// string submitted_by = 3;
if (this->submitted_by().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->submitted_by().data(), static_cast(this->submitted_by().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.MetaData.submitted_by");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
3, this->submitted_by(), target);
}
// repeated .org.phenopackets.schema.v1.core.Resource resources = 4;
for (unsigned int i = 0,
n = static_cast(this->resources_size()); i < n; i++) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
4, this->resources(static_cast(i)), target);
}
// repeated .org.phenopackets.schema.v1.core.Update updates = 5;
for (unsigned int i = 0,
n = static_cast(this->updates_size()); i < n; i++) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
5, this->updates(static_cast(i)), target);
}
// string phenopacket_schema_version = 6;
if (this->phenopacket_schema_version().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->phenopacket_schema_version().data(), static_cast(this->phenopacket_schema_version().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.MetaData.phenopacket_schema_version");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
6, this->phenopacket_schema_version(), target);
}
// repeated .org.phenopackets.schema.v1.core.ExternalReference external_references = 7;
for (unsigned int i = 0,
n = static_cast(this->external_references_size()); i < n; i++) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
7, this->external_references(static_cast(i)), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.MetaData)
return target;
}
size_t MetaData::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.MetaData)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// repeated .org.phenopackets.schema.v1.core.Resource resources = 4;
{
unsigned int count = static_cast(this->resources_size());
total_size += 1UL * count;
for (unsigned int i = 0; i < count; i++) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
this->resources(static_cast(i)));
}
}
// repeated .org.phenopackets.schema.v1.core.Update updates = 5;
{
unsigned int count = static_cast(this->updates_size());
total_size += 1UL * count;
for (unsigned int i = 0; i < count; i++) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
this->updates(static_cast(i)));
}
}
// repeated .org.phenopackets.schema.v1.core.ExternalReference external_references = 7;
{
unsigned int count = static_cast(this->external_references_size());
total_size += 1UL * count;
for (unsigned int i = 0; i < count; i++) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
this->external_references(static_cast(i)));
}
}
// string created_by = 2;
if (this->created_by().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->created_by());
}
// string submitted_by = 3;
if (this->submitted_by().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->submitted_by());
}
// string phenopacket_schema_version = 6;
if (this->phenopacket_schema_version().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->phenopacket_schema_version());
}
// .google.protobuf.Timestamp created = 1;
if (this->has_created()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*created_);
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void MetaData::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.MetaData)
GOOGLE_DCHECK_NE(&from, this);
const MetaData* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.MetaData)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.MetaData)
MergeFrom(*source);
}
}
void MetaData::MergeFrom(const MetaData& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.MetaData)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
resources_.MergeFrom(from.resources_);
updates_.MergeFrom(from.updates_);
external_references_.MergeFrom(from.external_references_);
if (from.created_by().size() > 0) {
created_by_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.created_by_);
}
if (from.submitted_by().size() > 0) {
submitted_by_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.submitted_by_);
}
if (from.phenopacket_schema_version().size() > 0) {
phenopacket_schema_version_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.phenopacket_schema_version_);
}
if (from.has_created()) {
mutable_created()->PROTOBUF_NAMESPACE_ID::Timestamp::MergeFrom(from.created());
}
}
void MetaData::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.MetaData)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void MetaData::CopyFrom(const MetaData& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.MetaData)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool MetaData::IsInitialized() const {
return true;
}
void MetaData::Swap(MetaData* other) {
if (other == this) return;
InternalSwap(other);
}
void MetaData::InternalSwap(MetaData* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
CastToBase(&resources_)->InternalSwap(CastToBase(&other->resources_));
CastToBase(&updates_)->InternalSwap(CastToBase(&other->updates_));
CastToBase(&external_references_)->InternalSwap(CastToBase(&other->external_references_));
created_by_.Swap(&other->created_by_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
submitted_by_.Swap(&other->submitted_by_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
phenopacket_schema_version_.Swap(&other->phenopacket_schema_version_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
swap(created_, other->created_);
}
::PROTOBUF_NAMESPACE_ID::Metadata MetaData::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void Update::InitAsDefaultInstance() {
::org::phenopackets::schema::v1::core::_Update_default_instance_._instance.get_mutable()->timestamp_ = const_cast< PROTOBUF_NAMESPACE_ID::Timestamp*>(
PROTOBUF_NAMESPACE_ID::Timestamp::internal_default_instance());
}
class Update::HasBitSetters {
public:
static const PROTOBUF_NAMESPACE_ID::Timestamp& timestamp(const Update* msg);
};
const PROTOBUF_NAMESPACE_ID::Timestamp&
Update::HasBitSetters::timestamp(const Update* msg) {
return *msg->timestamp_;
}
void Update::clear_timestamp() {
if (GetArenaNoVirtual() == nullptr && timestamp_ != nullptr) {
delete timestamp_;
}
timestamp_ = nullptr;
}
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int Update::kTimestampFieldNumber;
const int Update::kUpdatedByFieldNumber;
const int Update::kCommentFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
Update::Update()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.Update)
}
Update::Update(const Update& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
updated_by_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.updated_by().size() > 0) {
updated_by_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.updated_by_);
}
comment_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.comment().size() > 0) {
comment_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.comment_);
}
if (from.has_timestamp()) {
timestamp_ = new PROTOBUF_NAMESPACE_ID::Timestamp(*from.timestamp_);
} else {
timestamp_ = nullptr;
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.Update)
}
void Update::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_Update_base_2eproto.base);
updated_by_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
comment_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
timestamp_ = nullptr;
}
Update::~Update() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.Update)
SharedDtor();
}
void Update::SharedDtor() {
updated_by_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
comment_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (this != internal_default_instance()) delete timestamp_;
}
void Update::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const Update& Update::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_Update_base_2eproto.base);
return *internal_default_instance();
}
void Update::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.Update)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
updated_by_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
comment_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (GetArenaNoVirtual() == nullptr && timestamp_ != nullptr) {
delete timestamp_;
}
timestamp_ = nullptr;
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* Update::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// .google.protobuf.Timestamp timestamp = 1 [(.validate.rules) = {
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ctx->ParseMessage(mutable_timestamp(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// string updated_by = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_updated_by(), ptr, ctx, "org.phenopackets.schema.v1.core.Update.updated_by");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string comment = 3;
case 3:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 26)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_comment(), ptr, ctx, "org.phenopackets.schema.v1.core.Update.comment");
CHK_(ptr);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool Update::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.Update)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// .google.protobuf.Timestamp timestamp = 1 [(.validate.rules) = {
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_timestamp()));
} else {
goto handle_unusual;
}
break;
}
// string updated_by = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_updated_by()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->updated_by().data(), static_cast(this->updated_by().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Update.updated_by"));
} else {
goto handle_unusual;
}
break;
}
// string comment = 3;
case 3: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (26 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_comment()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->comment().data(), static_cast(this->comment().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Update.comment"));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.Update)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.Update)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void Update::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.Update)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .google.protobuf.Timestamp timestamp = 1 [(.validate.rules) = {
if (this->has_timestamp()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
1, HasBitSetters::timestamp(this), output);
}
// string updated_by = 2;
if (this->updated_by().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->updated_by().data(), static_cast(this->updated_by().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Update.updated_by");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
2, this->updated_by(), output);
}
// string comment = 3;
if (this->comment().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->comment().data(), static_cast(this->comment().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Update.comment");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
3, this->comment(), output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.Update)
}
::PROTOBUF_NAMESPACE_ID::uint8* Update::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.Update)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .google.protobuf.Timestamp timestamp = 1 [(.validate.rules) = {
if (this->has_timestamp()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
1, HasBitSetters::timestamp(this), target);
}
// string updated_by = 2;
if (this->updated_by().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->updated_by().data(), static_cast(this->updated_by().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Update.updated_by");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
2, this->updated_by(), target);
}
// string comment = 3;
if (this->comment().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->comment().data(), static_cast(this->comment().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Update.comment");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
3, this->comment(), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.Update)
return target;
}
size_t Update::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.Update)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// string updated_by = 2;
if (this->updated_by().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->updated_by());
}
// string comment = 3;
if (this->comment().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->comment());
}
// .google.protobuf.Timestamp timestamp = 1 [(.validate.rules) = {
if (this->has_timestamp()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*timestamp_);
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void Update::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.Update)
GOOGLE_DCHECK_NE(&from, this);
const Update* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.Update)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.Update)
MergeFrom(*source);
}
}
void Update::MergeFrom(const Update& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.Update)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
if (from.updated_by().size() > 0) {
updated_by_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.updated_by_);
}
if (from.comment().size() > 0) {
comment_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.comment_);
}
if (from.has_timestamp()) {
mutable_timestamp()->PROTOBUF_NAMESPACE_ID::Timestamp::MergeFrom(from.timestamp());
}
}
void Update::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.Update)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void Update::CopyFrom(const Update& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.Update)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool Update::IsInitialized() const {
return true;
}
void Update::Swap(Update* other) {
if (other == this) return;
InternalSwap(other);
}
void Update::InternalSwap(Update* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
updated_by_.Swap(&other->updated_by_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
comment_.Swap(&other->comment_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
swap(timestamp_, other->timestamp_);
}
::PROTOBUF_NAMESPACE_ID::Metadata Update::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void Resource::InitAsDefaultInstance() {
}
class Resource::HasBitSetters {
public:
};
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int Resource::kIdFieldNumber;
const int Resource::kNameFieldNumber;
const int Resource::kUrlFieldNumber;
const int Resource::kVersionFieldNumber;
const int Resource::kNamespacePrefixFieldNumber;
const int Resource::kIriPrefixFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
Resource::Resource()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.Resource)
}
Resource::Resource(const Resource& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.id().size() > 0) {
id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.id_);
}
name_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.name().size() > 0) {
name_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.name_);
}
url_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.url().size() > 0) {
url_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.url_);
}
version_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.version().size() > 0) {
version_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.version_);
}
namespace_prefix_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.namespace_prefix().size() > 0) {
namespace_prefix_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.namespace_prefix_);
}
iri_prefix_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.iri_prefix().size() > 0) {
iri_prefix_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.iri_prefix_);
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.Resource)
}
void Resource::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_Resource_base_2eproto.base);
id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
name_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
url_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
version_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
namespace_prefix_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
iri_prefix_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
Resource::~Resource() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.Resource)
SharedDtor();
}
void Resource::SharedDtor() {
id_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
name_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
url_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
version_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
namespace_prefix_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
iri_prefix_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
void Resource::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const Resource& Resource::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_Resource_base_2eproto.base);
return *internal_default_instance();
}
void Resource::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.Resource)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
name_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
url_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
version_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
namespace_prefix_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
iri_prefix_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* Resource::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// string id = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_id(), ptr, ctx, "org.phenopackets.schema.v1.core.Resource.id");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string name = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_name(), ptr, ctx, "org.phenopackets.schema.v1.core.Resource.name");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string url = 3;
case 3:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 26)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_url(), ptr, ctx, "org.phenopackets.schema.v1.core.Resource.url");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string version = 4;
case 4:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 34)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_version(), ptr, ctx, "org.phenopackets.schema.v1.core.Resource.version");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string namespace_prefix = 5;
case 5:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 42)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_namespace_prefix(), ptr, ctx, "org.phenopackets.schema.v1.core.Resource.namespace_prefix");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string iri_prefix = 6;
case 6:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 50)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_iri_prefix(), ptr, ctx, "org.phenopackets.schema.v1.core.Resource.iri_prefix");
CHK_(ptr);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool Resource::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.Resource)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// string id = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_id()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Resource.id"));
} else {
goto handle_unusual;
}
break;
}
// string name = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_name()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->name().data(), static_cast(this->name().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Resource.name"));
} else {
goto handle_unusual;
}
break;
}
// string url = 3;
case 3: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (26 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_url()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->url().data(), static_cast(this->url().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Resource.url"));
} else {
goto handle_unusual;
}
break;
}
// string version = 4;
case 4: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (34 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_version()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->version().data(), static_cast(this->version().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Resource.version"));
} else {
goto handle_unusual;
}
break;
}
// string namespace_prefix = 5;
case 5: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (42 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_namespace_prefix()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->namespace_prefix().data(), static_cast(this->namespace_prefix().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Resource.namespace_prefix"));
} else {
goto handle_unusual;
}
break;
}
// string iri_prefix = 6;
case 6: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (50 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_iri_prefix()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->iri_prefix().data(), static_cast(this->iri_prefix().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Resource.iri_prefix"));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.Resource)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.Resource)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void Resource::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.Resource)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Resource.id");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
1, this->id(), output);
}
// string name = 2;
if (this->name().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->name().data(), static_cast(this->name().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Resource.name");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
2, this->name(), output);
}
// string url = 3;
if (this->url().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->url().data(), static_cast(this->url().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Resource.url");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
3, this->url(), output);
}
// string version = 4;
if (this->version().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->version().data(), static_cast(this->version().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Resource.version");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
4, this->version(), output);
}
// string namespace_prefix = 5;
if (this->namespace_prefix().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->namespace_prefix().data(), static_cast(this->namespace_prefix().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Resource.namespace_prefix");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
5, this->namespace_prefix(), output);
}
// string iri_prefix = 6;
if (this->iri_prefix().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->iri_prefix().data(), static_cast(this->iri_prefix().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Resource.iri_prefix");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
6, this->iri_prefix(), output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.Resource)
}
::PROTOBUF_NAMESPACE_ID::uint8* Resource::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.Resource)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Resource.id");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
1, this->id(), target);
}
// string name = 2;
if (this->name().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->name().data(), static_cast(this->name().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Resource.name");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
2, this->name(), target);
}
// string url = 3;
if (this->url().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->url().data(), static_cast(this->url().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Resource.url");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
3, this->url(), target);
}
// string version = 4;
if (this->version().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->version().data(), static_cast(this->version().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Resource.version");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
4, this->version(), target);
}
// string namespace_prefix = 5;
if (this->namespace_prefix().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->namespace_prefix().data(), static_cast(this->namespace_prefix().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Resource.namespace_prefix");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
5, this->namespace_prefix(), target);
}
// string iri_prefix = 6;
if (this->iri_prefix().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->iri_prefix().data(), static_cast(this->iri_prefix().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Resource.iri_prefix");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
6, this->iri_prefix(), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.Resource)
return target;
}
size_t Resource::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.Resource)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->id());
}
// string name = 2;
if (this->name().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->name());
}
// string url = 3;
if (this->url().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->url());
}
// string version = 4;
if (this->version().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->version());
}
// string namespace_prefix = 5;
if (this->namespace_prefix().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->namespace_prefix());
}
// string iri_prefix = 6;
if (this->iri_prefix().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->iri_prefix());
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void Resource::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.Resource)
GOOGLE_DCHECK_NE(&from, this);
const Resource* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.Resource)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.Resource)
MergeFrom(*source);
}
}
void Resource::MergeFrom(const Resource& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.Resource)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
if (from.id().size() > 0) {
id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.id_);
}
if (from.name().size() > 0) {
name_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.name_);
}
if (from.url().size() > 0) {
url_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.url_);
}
if (from.version().size() > 0) {
version_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.version_);
}
if (from.namespace_prefix().size() > 0) {
namespace_prefix_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.namespace_prefix_);
}
if (from.iri_prefix().size() > 0) {
iri_prefix_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.iri_prefix_);
}
}
void Resource::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.Resource)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void Resource::CopyFrom(const Resource& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.Resource)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool Resource::IsInitialized() const {
return true;
}
void Resource::Swap(Resource* other) {
if (other == this) return;
InternalSwap(other);
}
void Resource::InternalSwap(Resource* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
id_.Swap(&other->id_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
name_.Swap(&other->name_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
url_.Swap(&other->url_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
version_.Swap(&other->version_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
namespace_prefix_.Swap(&other->namespace_prefix_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
iri_prefix_.Swap(&other->iri_prefix_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
}
::PROTOBUF_NAMESPACE_ID::Metadata Resource::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void OntologyClass::InitAsDefaultInstance() {
}
class OntologyClass::HasBitSetters {
public:
};
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int OntologyClass::kIdFieldNumber;
const int OntologyClass::kLabelFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
OntologyClass::OntologyClass()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.OntologyClass)
}
OntologyClass::OntologyClass(const OntologyClass& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.id().size() > 0) {
id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.id_);
}
label_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.label().size() > 0) {
label_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.label_);
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.OntologyClass)
}
void OntologyClass::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_OntologyClass_base_2eproto.base);
id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
label_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
OntologyClass::~OntologyClass() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.OntologyClass)
SharedDtor();
}
void OntologyClass::SharedDtor() {
id_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
label_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
void OntologyClass::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const OntologyClass& OntologyClass::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_OntologyClass_base_2eproto.base);
return *internal_default_instance();
}
void OntologyClass::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.OntologyClass)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
label_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* OntologyClass::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// string id = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_id(), ptr, ctx, "org.phenopackets.schema.v1.core.OntologyClass.id");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string label = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_label(), ptr, ctx, "org.phenopackets.schema.v1.core.OntologyClass.label");
CHK_(ptr);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool OntologyClass::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.OntologyClass)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// string id = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_id()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.OntologyClass.id"));
} else {
goto handle_unusual;
}
break;
}
// string label = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_label()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->label().data(), static_cast(this->label().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.OntologyClass.label"));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.OntologyClass)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.OntologyClass)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void OntologyClass::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.OntologyClass)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.OntologyClass.id");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
1, this->id(), output);
}
// string label = 2;
if (this->label().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->label().data(), static_cast(this->label().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.OntologyClass.label");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
2, this->label(), output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.OntologyClass)
}
::PROTOBUF_NAMESPACE_ID::uint8* OntologyClass::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.OntologyClass)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.OntologyClass.id");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
1, this->id(), target);
}
// string label = 2;
if (this->label().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->label().data(), static_cast(this->label().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.OntologyClass.label");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
2, this->label(), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.OntologyClass)
return target;
}
size_t OntologyClass::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.OntologyClass)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->id());
}
// string label = 2;
if (this->label().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->label());
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void OntologyClass::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.OntologyClass)
GOOGLE_DCHECK_NE(&from, this);
const OntologyClass* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.OntologyClass)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.OntologyClass)
MergeFrom(*source);
}
}
void OntologyClass::MergeFrom(const OntologyClass& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.OntologyClass)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
if (from.id().size() > 0) {
id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.id_);
}
if (from.label().size() > 0) {
label_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.label_);
}
}
void OntologyClass::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.OntologyClass)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void OntologyClass::CopyFrom(const OntologyClass& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.OntologyClass)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool OntologyClass::IsInitialized() const {
return true;
}
void OntologyClass::Swap(OntologyClass* other) {
if (other == this) return;
InternalSwap(other);
}
void OntologyClass::InternalSwap(OntologyClass* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
id_.Swap(&other->id_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
label_.Swap(&other->label_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
}
::PROTOBUF_NAMESPACE_ID::Metadata OntologyClass::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void PhenotypicFeature::InitAsDefaultInstance() {
::org::phenopackets::schema::v1::core::_PhenotypicFeature_default_instance_._instance.get_mutable()->type_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
::org::phenopackets::schema::v1::core::_PhenotypicFeature_default_instance_._instance.get_mutable()->severity_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
::org::phenopackets::schema::v1::core::_PhenotypicFeature_default_instance_.age_of_onset_ = const_cast< ::org::phenopackets::schema::v1::core::Age*>(
::org::phenopackets::schema::v1::core::Age::internal_default_instance());
::org::phenopackets::schema::v1::core::_PhenotypicFeature_default_instance_.age_range_of_onset_ = const_cast< ::org::phenopackets::schema::v1::core::AgeRange*>(
::org::phenopackets::schema::v1::core::AgeRange::internal_default_instance());
::org::phenopackets::schema::v1::core::_PhenotypicFeature_default_instance_.class_of_onset_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
}
class PhenotypicFeature::HasBitSetters {
public:
static const ::org::phenopackets::schema::v1::core::OntologyClass& type(const PhenotypicFeature* msg);
static const ::org::phenopackets::schema::v1::core::OntologyClass& severity(const PhenotypicFeature* msg);
static const ::org::phenopackets::schema::v1::core::Age& age_of_onset(const PhenotypicFeature* msg);
static const ::org::phenopackets::schema::v1::core::AgeRange& age_range_of_onset(const PhenotypicFeature* msg);
static const ::org::phenopackets::schema::v1::core::OntologyClass& class_of_onset(const PhenotypicFeature* msg);
};
const ::org::phenopackets::schema::v1::core::OntologyClass&
PhenotypicFeature::HasBitSetters::type(const PhenotypicFeature* msg) {
return *msg->type_;
}
const ::org::phenopackets::schema::v1::core::OntologyClass&
PhenotypicFeature::HasBitSetters::severity(const PhenotypicFeature* msg) {
return *msg->severity_;
}
const ::org::phenopackets::schema::v1::core::Age&
PhenotypicFeature::HasBitSetters::age_of_onset(const PhenotypicFeature* msg) {
return *msg->onset_.age_of_onset_;
}
const ::org::phenopackets::schema::v1::core::AgeRange&
PhenotypicFeature::HasBitSetters::age_range_of_onset(const PhenotypicFeature* msg) {
return *msg->onset_.age_range_of_onset_;
}
const ::org::phenopackets::schema::v1::core::OntologyClass&
PhenotypicFeature::HasBitSetters::class_of_onset(const PhenotypicFeature* msg) {
return *msg->onset_.class_of_onset_;
}
void PhenotypicFeature::set_allocated_age_of_onset(::org::phenopackets::schema::v1::core::Age* age_of_onset) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_onset();
if (age_of_onset) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
age_of_onset = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, age_of_onset, submessage_arena);
}
set_has_age_of_onset();
onset_.age_of_onset_ = age_of_onset;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.PhenotypicFeature.age_of_onset)
}
void PhenotypicFeature::set_allocated_age_range_of_onset(::org::phenopackets::schema::v1::core::AgeRange* age_range_of_onset) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_onset();
if (age_range_of_onset) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
age_range_of_onset = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, age_range_of_onset, submessage_arena);
}
set_has_age_range_of_onset();
onset_.age_range_of_onset_ = age_range_of_onset;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.PhenotypicFeature.age_range_of_onset)
}
void PhenotypicFeature::set_allocated_class_of_onset(::org::phenopackets::schema::v1::core::OntologyClass* class_of_onset) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_onset();
if (class_of_onset) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
class_of_onset = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, class_of_onset, submessage_arena);
}
set_has_class_of_onset();
onset_.class_of_onset_ = class_of_onset;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.PhenotypicFeature.class_of_onset)
}
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int PhenotypicFeature::kDescriptionFieldNumber;
const int PhenotypicFeature::kTypeFieldNumber;
const int PhenotypicFeature::kNegatedFieldNumber;
const int PhenotypicFeature::kSeverityFieldNumber;
const int PhenotypicFeature::kModifiersFieldNumber;
const int PhenotypicFeature::kAgeOfOnsetFieldNumber;
const int PhenotypicFeature::kAgeRangeOfOnsetFieldNumber;
const int PhenotypicFeature::kClassOfOnsetFieldNumber;
const int PhenotypicFeature::kEvidenceFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
PhenotypicFeature::PhenotypicFeature()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.PhenotypicFeature)
}
PhenotypicFeature::PhenotypicFeature(const PhenotypicFeature& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr),
modifiers_(from.modifiers_),
evidence_(from.evidence_) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
description_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.description().size() > 0) {
description_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.description_);
}
if (from.has_type()) {
type_ = new ::org::phenopackets::schema::v1::core::OntologyClass(*from.type_);
} else {
type_ = nullptr;
}
if (from.has_severity()) {
severity_ = new ::org::phenopackets::schema::v1::core::OntologyClass(*from.severity_);
} else {
severity_ = nullptr;
}
negated_ = from.negated_;
clear_has_onset();
switch (from.onset_case()) {
case kAgeOfOnset: {
mutable_age_of_onset()->::org::phenopackets::schema::v1::core::Age::MergeFrom(from.age_of_onset());
break;
}
case kAgeRangeOfOnset: {
mutable_age_range_of_onset()->::org::phenopackets::schema::v1::core::AgeRange::MergeFrom(from.age_range_of_onset());
break;
}
case kClassOfOnset: {
mutable_class_of_onset()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.class_of_onset());
break;
}
case ONSET_NOT_SET: {
break;
}
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.PhenotypicFeature)
}
void PhenotypicFeature::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_PhenotypicFeature_base_2eproto.base);
description_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
::memset(&type_, 0, static_cast(
reinterpret_cast(&negated_) -
reinterpret_cast(&type_)) + sizeof(negated_));
clear_has_onset();
}
PhenotypicFeature::~PhenotypicFeature() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.PhenotypicFeature)
SharedDtor();
}
void PhenotypicFeature::SharedDtor() {
description_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (this != internal_default_instance()) delete type_;
if (this != internal_default_instance()) delete severity_;
if (has_onset()) {
clear_onset();
}
}
void PhenotypicFeature::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const PhenotypicFeature& PhenotypicFeature::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_PhenotypicFeature_base_2eproto.base);
return *internal_default_instance();
}
void PhenotypicFeature::clear_onset() {
// @@protoc_insertion_point(one_of_clear_start:org.phenopackets.schema.v1.core.PhenotypicFeature)
switch (onset_case()) {
case kAgeOfOnset: {
delete onset_.age_of_onset_;
break;
}
case kAgeRangeOfOnset: {
delete onset_.age_range_of_onset_;
break;
}
case kClassOfOnset: {
delete onset_.class_of_onset_;
break;
}
case ONSET_NOT_SET: {
break;
}
}
_oneof_case_[0] = ONSET_NOT_SET;
}
void PhenotypicFeature::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.PhenotypicFeature)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
modifiers_.Clear();
evidence_.Clear();
description_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (GetArenaNoVirtual() == nullptr && type_ != nullptr) {
delete type_;
}
type_ = nullptr;
if (GetArenaNoVirtual() == nullptr && severity_ != nullptr) {
delete severity_;
}
severity_ = nullptr;
negated_ = false;
clear_onset();
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* PhenotypicFeature::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// string description = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_description(), ptr, ctx, "org.phenopackets.schema.v1.core.PhenotypicFeature.description");
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.OntologyClass type = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ctx->ParseMessage(mutable_type(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// bool negated = 3;
case 3:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 24)) {
negated_ = ::PROTOBUF_NAMESPACE_ID::internal::ReadVarint(&ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.OntologyClass severity = 4;
case 4:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 34)) {
ptr = ctx->ParseMessage(mutable_severity(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// repeated .org.phenopackets.schema.v1.core.OntologyClass modifiers = 5;
case 5:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 42)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(add_modifiers(), ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 42);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.Age age_of_onset = 6;
case 6:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 50)) {
ptr = ctx->ParseMessage(mutable_age_of_onset(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 7;
case 7:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 58)) {
ptr = ctx->ParseMessage(mutable_age_range_of_onset(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 9;
case 9:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 74)) {
ptr = ctx->ParseMessage(mutable_class_of_onset(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// repeated .org.phenopackets.schema.v1.core.Evidence evidence = 10;
case 10:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 82)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(add_evidence(), ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 82);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool PhenotypicFeature::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.PhenotypicFeature)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// string description = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_description()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->description().data(), static_cast(this->description().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.PhenotypicFeature.description"));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.OntologyClass type = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_type()));
} else {
goto handle_unusual;
}
break;
}
// bool negated = 3;
case 3: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (24 & 0xFF)) {
DO_((::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadPrimitive<
bool, ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::TYPE_BOOL>(
input, &negated_)));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.OntologyClass severity = 4;
case 4: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (34 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_severity()));
} else {
goto handle_unusual;
}
break;
}
// repeated .org.phenopackets.schema.v1.core.OntologyClass modifiers = 5;
case 5: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (42 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, add_modifiers()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.Age age_of_onset = 6;
case 6: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (50 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_age_of_onset()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 7;
case 7: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (58 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_age_range_of_onset()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 9;
case 9: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (74 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_class_of_onset()));
} else {
goto handle_unusual;
}
break;
}
// repeated .org.phenopackets.schema.v1.core.Evidence evidence = 10;
case 10: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (82 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, add_evidence()));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.PhenotypicFeature)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.PhenotypicFeature)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void PhenotypicFeature::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.PhenotypicFeature)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string description = 1;
if (this->description().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->description().data(), static_cast(this->description().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.PhenotypicFeature.description");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
1, this->description(), output);
}
// .org.phenopackets.schema.v1.core.OntologyClass type = 2;
if (this->has_type()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
2, HasBitSetters::type(this), output);
}
// bool negated = 3;
if (this->negated() != 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteBool(3, this->negated(), output);
}
// .org.phenopackets.schema.v1.core.OntologyClass severity = 4;
if (this->has_severity()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
4, HasBitSetters::severity(this), output);
}
// repeated .org.phenopackets.schema.v1.core.OntologyClass modifiers = 5;
for (unsigned int i = 0,
n = static_cast(this->modifiers_size()); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
5,
this->modifiers(static_cast(i)),
output);
}
// .org.phenopackets.schema.v1.core.Age age_of_onset = 6;
if (has_age_of_onset()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
6, HasBitSetters::age_of_onset(this), output);
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 7;
if (has_age_range_of_onset()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
7, HasBitSetters::age_range_of_onset(this), output);
}
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 9;
if (has_class_of_onset()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
9, HasBitSetters::class_of_onset(this), output);
}
// repeated .org.phenopackets.schema.v1.core.Evidence evidence = 10;
for (unsigned int i = 0,
n = static_cast(this->evidence_size()); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
10,
this->evidence(static_cast(i)),
output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.PhenotypicFeature)
}
::PROTOBUF_NAMESPACE_ID::uint8* PhenotypicFeature::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.PhenotypicFeature)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string description = 1;
if (this->description().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->description().data(), static_cast(this->description().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.PhenotypicFeature.description");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
1, this->description(), target);
}
// .org.phenopackets.schema.v1.core.OntologyClass type = 2;
if (this->has_type()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
2, HasBitSetters::type(this), target);
}
// bool negated = 3;
if (this->negated() != 0) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteBoolToArray(3, this->negated(), target);
}
// .org.phenopackets.schema.v1.core.OntologyClass severity = 4;
if (this->has_severity()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
4, HasBitSetters::severity(this), target);
}
// repeated .org.phenopackets.schema.v1.core.OntologyClass modifiers = 5;
for (unsigned int i = 0,
n = static_cast(this->modifiers_size()); i < n; i++) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
5, this->modifiers(static_cast(i)), target);
}
// .org.phenopackets.schema.v1.core.Age age_of_onset = 6;
if (has_age_of_onset()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
6, HasBitSetters::age_of_onset(this), target);
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 7;
if (has_age_range_of_onset()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
7, HasBitSetters::age_range_of_onset(this), target);
}
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 9;
if (has_class_of_onset()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
9, HasBitSetters::class_of_onset(this), target);
}
// repeated .org.phenopackets.schema.v1.core.Evidence evidence = 10;
for (unsigned int i = 0,
n = static_cast(this->evidence_size()); i < n; i++) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
10, this->evidence(static_cast(i)), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.PhenotypicFeature)
return target;
}
size_t PhenotypicFeature::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.PhenotypicFeature)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// repeated .org.phenopackets.schema.v1.core.OntologyClass modifiers = 5;
{
unsigned int count = static_cast(this->modifiers_size());
total_size += 1UL * count;
for (unsigned int i = 0; i < count; i++) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
this->modifiers(static_cast(i)));
}
}
// repeated .org.phenopackets.schema.v1.core.Evidence evidence = 10;
{
unsigned int count = static_cast(this->evidence_size());
total_size += 1UL * count;
for (unsigned int i = 0; i < count; i++) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
this->evidence(static_cast(i)));
}
}
// string description = 1;
if (this->description().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->description());
}
// .org.phenopackets.schema.v1.core.OntologyClass type = 2;
if (this->has_type()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*type_);
}
// .org.phenopackets.schema.v1.core.OntologyClass severity = 4;
if (this->has_severity()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*severity_);
}
// bool negated = 3;
if (this->negated() != 0) {
total_size += 1 + 1;
}
switch (onset_case()) {
// .org.phenopackets.schema.v1.core.Age age_of_onset = 6;
case kAgeOfOnset: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*onset_.age_of_onset_);
break;
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 7;
case kAgeRangeOfOnset: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*onset_.age_range_of_onset_);
break;
}
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 9;
case kClassOfOnset: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*onset_.class_of_onset_);
break;
}
case ONSET_NOT_SET: {
break;
}
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void PhenotypicFeature::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.PhenotypicFeature)
GOOGLE_DCHECK_NE(&from, this);
const PhenotypicFeature* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.PhenotypicFeature)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.PhenotypicFeature)
MergeFrom(*source);
}
}
void PhenotypicFeature::MergeFrom(const PhenotypicFeature& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.PhenotypicFeature)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
modifiers_.MergeFrom(from.modifiers_);
evidence_.MergeFrom(from.evidence_);
if (from.description().size() > 0) {
description_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.description_);
}
if (from.has_type()) {
mutable_type()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.type());
}
if (from.has_severity()) {
mutable_severity()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.severity());
}
if (from.negated() != 0) {
set_negated(from.negated());
}
switch (from.onset_case()) {
case kAgeOfOnset: {
mutable_age_of_onset()->::org::phenopackets::schema::v1::core::Age::MergeFrom(from.age_of_onset());
break;
}
case kAgeRangeOfOnset: {
mutable_age_range_of_onset()->::org::phenopackets::schema::v1::core::AgeRange::MergeFrom(from.age_range_of_onset());
break;
}
case kClassOfOnset: {
mutable_class_of_onset()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.class_of_onset());
break;
}
case ONSET_NOT_SET: {
break;
}
}
}
void PhenotypicFeature::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.PhenotypicFeature)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void PhenotypicFeature::CopyFrom(const PhenotypicFeature& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.PhenotypicFeature)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool PhenotypicFeature::IsInitialized() const {
return true;
}
void PhenotypicFeature::Swap(PhenotypicFeature* other) {
if (other == this) return;
InternalSwap(other);
}
void PhenotypicFeature::InternalSwap(PhenotypicFeature* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
CastToBase(&modifiers_)->InternalSwap(CastToBase(&other->modifiers_));
CastToBase(&evidence_)->InternalSwap(CastToBase(&other->evidence_));
description_.Swap(&other->description_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
swap(type_, other->type_);
swap(severity_, other->severity_);
swap(negated_, other->negated_);
swap(onset_, other->onset_);
swap(_oneof_case_[0], other->_oneof_case_[0]);
}
::PROTOBUF_NAMESPACE_ID::Metadata PhenotypicFeature::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void Evidence::InitAsDefaultInstance() {
::org::phenopackets::schema::v1::core::_Evidence_default_instance_._instance.get_mutable()->evidence_code_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
::org::phenopackets::schema::v1::core::_Evidence_default_instance_._instance.get_mutable()->reference_ = const_cast< ::org::phenopackets::schema::v1::core::ExternalReference*>(
::org::phenopackets::schema::v1::core::ExternalReference::internal_default_instance());
}
class Evidence::HasBitSetters {
public:
static const ::org::phenopackets::schema::v1::core::OntologyClass& evidence_code(const Evidence* msg);
static const ::org::phenopackets::schema::v1::core::ExternalReference& reference(const Evidence* msg);
};
const ::org::phenopackets::schema::v1::core::OntologyClass&
Evidence::HasBitSetters::evidence_code(const Evidence* msg) {
return *msg->evidence_code_;
}
const ::org::phenopackets::schema::v1::core::ExternalReference&
Evidence::HasBitSetters::reference(const Evidence* msg) {
return *msg->reference_;
}
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int Evidence::kEvidenceCodeFieldNumber;
const int Evidence::kReferenceFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
Evidence::Evidence()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.Evidence)
}
Evidence::Evidence(const Evidence& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
if (from.has_evidence_code()) {
evidence_code_ = new ::org::phenopackets::schema::v1::core::OntologyClass(*from.evidence_code_);
} else {
evidence_code_ = nullptr;
}
if (from.has_reference()) {
reference_ = new ::org::phenopackets::schema::v1::core::ExternalReference(*from.reference_);
} else {
reference_ = nullptr;
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.Evidence)
}
void Evidence::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_Evidence_base_2eproto.base);
::memset(&evidence_code_, 0, static_cast(
reinterpret_cast(&reference_) -
reinterpret_cast(&evidence_code_)) + sizeof(reference_));
}
Evidence::~Evidence() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.Evidence)
SharedDtor();
}
void Evidence::SharedDtor() {
if (this != internal_default_instance()) delete evidence_code_;
if (this != internal_default_instance()) delete reference_;
}
void Evidence::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const Evidence& Evidence::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_Evidence_base_2eproto.base);
return *internal_default_instance();
}
void Evidence::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.Evidence)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
if (GetArenaNoVirtual() == nullptr && evidence_code_ != nullptr) {
delete evidence_code_;
}
evidence_code_ = nullptr;
if (GetArenaNoVirtual() == nullptr && reference_ != nullptr) {
delete reference_;
}
reference_ = nullptr;
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* Evidence::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// .org.phenopackets.schema.v1.core.OntologyClass evidence_code = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ctx->ParseMessage(mutable_evidence_code(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.ExternalReference reference = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ctx->ParseMessage(mutable_reference(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool Evidence::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.Evidence)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// .org.phenopackets.schema.v1.core.OntologyClass evidence_code = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_evidence_code()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.ExternalReference reference = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_reference()));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.Evidence)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.Evidence)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void Evidence::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.Evidence)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .org.phenopackets.schema.v1.core.OntologyClass evidence_code = 1;
if (this->has_evidence_code()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
1, HasBitSetters::evidence_code(this), output);
}
// .org.phenopackets.schema.v1.core.ExternalReference reference = 2;
if (this->has_reference()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
2, HasBitSetters::reference(this), output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.Evidence)
}
::PROTOBUF_NAMESPACE_ID::uint8* Evidence::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.Evidence)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .org.phenopackets.schema.v1.core.OntologyClass evidence_code = 1;
if (this->has_evidence_code()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
1, HasBitSetters::evidence_code(this), target);
}
// .org.phenopackets.schema.v1.core.ExternalReference reference = 2;
if (this->has_reference()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
2, HasBitSetters::reference(this), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.Evidence)
return target;
}
size_t Evidence::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.Evidence)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// .org.phenopackets.schema.v1.core.OntologyClass evidence_code = 1;
if (this->has_evidence_code()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*evidence_code_);
}
// .org.phenopackets.schema.v1.core.ExternalReference reference = 2;
if (this->has_reference()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*reference_);
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void Evidence::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.Evidence)
GOOGLE_DCHECK_NE(&from, this);
const Evidence* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.Evidence)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.Evidence)
MergeFrom(*source);
}
}
void Evidence::MergeFrom(const Evidence& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.Evidence)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
if (from.has_evidence_code()) {
mutable_evidence_code()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.evidence_code());
}
if (from.has_reference()) {
mutable_reference()->::org::phenopackets::schema::v1::core::ExternalReference::MergeFrom(from.reference());
}
}
void Evidence::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.Evidence)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void Evidence::CopyFrom(const Evidence& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.Evidence)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool Evidence::IsInitialized() const {
return true;
}
void Evidence::Swap(Evidence* other) {
if (other == this) return;
InternalSwap(other);
}
void Evidence::InternalSwap(Evidence* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
swap(evidence_code_, other->evidence_code_);
swap(reference_, other->reference_);
}
::PROTOBUF_NAMESPACE_ID::Metadata Evidence::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void ExternalReference::InitAsDefaultInstance() {
}
class ExternalReference::HasBitSetters {
public:
};
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int ExternalReference::kIdFieldNumber;
const int ExternalReference::kDescriptionFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
ExternalReference::ExternalReference()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.ExternalReference)
}
ExternalReference::ExternalReference(const ExternalReference& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.id().size() > 0) {
id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.id_);
}
description_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.description().size() > 0) {
description_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.description_);
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.ExternalReference)
}
void ExternalReference::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_ExternalReference_base_2eproto.base);
id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
description_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
ExternalReference::~ExternalReference() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.ExternalReference)
SharedDtor();
}
void ExternalReference::SharedDtor() {
id_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
description_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
void ExternalReference::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const ExternalReference& ExternalReference::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_ExternalReference_base_2eproto.base);
return *internal_default_instance();
}
void ExternalReference::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.ExternalReference)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
description_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* ExternalReference::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// string id = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_id(), ptr, ctx, "org.phenopackets.schema.v1.core.ExternalReference.id");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string description = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_description(), ptr, ctx, "org.phenopackets.schema.v1.core.ExternalReference.description");
CHK_(ptr);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool ExternalReference::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.ExternalReference)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// string id = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_id()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.ExternalReference.id"));
} else {
goto handle_unusual;
}
break;
}
// string description = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_description()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->description().data(), static_cast(this->description().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.ExternalReference.description"));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.ExternalReference)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.ExternalReference)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void ExternalReference::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.ExternalReference)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.ExternalReference.id");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
1, this->id(), output);
}
// string description = 2;
if (this->description().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->description().data(), static_cast(this->description().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.ExternalReference.description");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
2, this->description(), output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.ExternalReference)
}
::PROTOBUF_NAMESPACE_ID::uint8* ExternalReference::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.ExternalReference)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.ExternalReference.id");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
1, this->id(), target);
}
// string description = 2;
if (this->description().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->description().data(), static_cast(this->description().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.ExternalReference.description");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
2, this->description(), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.ExternalReference)
return target;
}
size_t ExternalReference::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.ExternalReference)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->id());
}
// string description = 2;
if (this->description().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->description());
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void ExternalReference::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.ExternalReference)
GOOGLE_DCHECK_NE(&from, this);
const ExternalReference* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.ExternalReference)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.ExternalReference)
MergeFrom(*source);
}
}
void ExternalReference::MergeFrom(const ExternalReference& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.ExternalReference)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
if (from.id().size() > 0) {
id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.id_);
}
if (from.description().size() > 0) {
description_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.description_);
}
}
void ExternalReference::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.ExternalReference)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void ExternalReference::CopyFrom(const ExternalReference& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.ExternalReference)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool ExternalReference::IsInitialized() const {
return true;
}
void ExternalReference::Swap(ExternalReference* other) {
if (other == this) return;
InternalSwap(other);
}
void ExternalReference::InternalSwap(ExternalReference* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
id_.Swap(&other->id_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
description_.Swap(&other->description_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
}
::PROTOBUF_NAMESPACE_ID::Metadata ExternalReference::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void Individual::InitAsDefaultInstance() {
::org::phenopackets::schema::v1::core::_Individual_default_instance_._instance.get_mutable()->date_of_birth_ = const_cast< PROTOBUF_NAMESPACE_ID::Timestamp*>(
PROTOBUF_NAMESPACE_ID::Timestamp::internal_default_instance());
::org::phenopackets::schema::v1::core::_Individual_default_instance_.age_at_collection_ = const_cast< ::org::phenopackets::schema::v1::core::Age*>(
::org::phenopackets::schema::v1::core::Age::internal_default_instance());
::org::phenopackets::schema::v1::core::_Individual_default_instance_.age_range_at_collection_ = const_cast< ::org::phenopackets::schema::v1::core::AgeRange*>(
::org::phenopackets::schema::v1::core::AgeRange::internal_default_instance());
::org::phenopackets::schema::v1::core::_Individual_default_instance_._instance.get_mutable()->taxonomy_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
}
class Individual::HasBitSetters {
public:
static const PROTOBUF_NAMESPACE_ID::Timestamp& date_of_birth(const Individual* msg);
static const ::org::phenopackets::schema::v1::core::Age& age_at_collection(const Individual* msg);
static const ::org::phenopackets::schema::v1::core::AgeRange& age_range_at_collection(const Individual* msg);
static const ::org::phenopackets::schema::v1::core::OntologyClass& taxonomy(const Individual* msg);
};
const PROTOBUF_NAMESPACE_ID::Timestamp&
Individual::HasBitSetters::date_of_birth(const Individual* msg) {
return *msg->date_of_birth_;
}
const ::org::phenopackets::schema::v1::core::Age&
Individual::HasBitSetters::age_at_collection(const Individual* msg) {
return *msg->age_.age_at_collection_;
}
const ::org::phenopackets::schema::v1::core::AgeRange&
Individual::HasBitSetters::age_range_at_collection(const Individual* msg) {
return *msg->age_.age_range_at_collection_;
}
const ::org::phenopackets::schema::v1::core::OntologyClass&
Individual::HasBitSetters::taxonomy(const Individual* msg) {
return *msg->taxonomy_;
}
void Individual::clear_date_of_birth() {
if (GetArenaNoVirtual() == nullptr && date_of_birth_ != nullptr) {
delete date_of_birth_;
}
date_of_birth_ = nullptr;
}
void Individual::set_allocated_age_at_collection(::org::phenopackets::schema::v1::core::Age* age_at_collection) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_age();
if (age_at_collection) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
age_at_collection = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, age_at_collection, submessage_arena);
}
set_has_age_at_collection();
age_.age_at_collection_ = age_at_collection;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Individual.age_at_collection)
}
void Individual::set_allocated_age_range_at_collection(::org::phenopackets::schema::v1::core::AgeRange* age_range_at_collection) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_age();
if (age_range_at_collection) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
age_range_at_collection = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, age_range_at_collection, submessage_arena);
}
set_has_age_range_at_collection();
age_.age_range_at_collection_ = age_range_at_collection;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Individual.age_range_at_collection)
}
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int Individual::kIdFieldNumber;
const int Individual::kAlternateIdsFieldNumber;
const int Individual::kDateOfBirthFieldNumber;
const int Individual::kAgeAtCollectionFieldNumber;
const int Individual::kAgeRangeAtCollectionFieldNumber;
const int Individual::kSexFieldNumber;
const int Individual::kKaryotypicSexFieldNumber;
const int Individual::kTaxonomyFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
Individual::Individual()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.Individual)
}
Individual::Individual(const Individual& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr),
alternate_ids_(from.alternate_ids_) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.id().size() > 0) {
id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.id_);
}
if (from.has_date_of_birth()) {
date_of_birth_ = new PROTOBUF_NAMESPACE_ID::Timestamp(*from.date_of_birth_);
} else {
date_of_birth_ = nullptr;
}
if (from.has_taxonomy()) {
taxonomy_ = new ::org::phenopackets::schema::v1::core::OntologyClass(*from.taxonomy_);
} else {
taxonomy_ = nullptr;
}
::memcpy(&sex_, &from.sex_,
static_cast(reinterpret_cast(&karyotypic_sex_) -
reinterpret_cast(&sex_)) + sizeof(karyotypic_sex_));
clear_has_age();
switch (from.age_case()) {
case kAgeAtCollection: {
mutable_age_at_collection()->::org::phenopackets::schema::v1::core::Age::MergeFrom(from.age_at_collection());
break;
}
case kAgeRangeAtCollection: {
mutable_age_range_at_collection()->::org::phenopackets::schema::v1::core::AgeRange::MergeFrom(from.age_range_at_collection());
break;
}
case AGE_NOT_SET: {
break;
}
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.Individual)
}
void Individual::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_Individual_base_2eproto.base);
id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
::memset(&date_of_birth_, 0, static_cast(
reinterpret_cast(&karyotypic_sex_) -
reinterpret_cast(&date_of_birth_)) + sizeof(karyotypic_sex_));
clear_has_age();
}
Individual::~Individual() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.Individual)
SharedDtor();
}
void Individual::SharedDtor() {
id_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (this != internal_default_instance()) delete date_of_birth_;
if (this != internal_default_instance()) delete taxonomy_;
if (has_age()) {
clear_age();
}
}
void Individual::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const Individual& Individual::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_Individual_base_2eproto.base);
return *internal_default_instance();
}
void Individual::clear_age() {
// @@protoc_insertion_point(one_of_clear_start:org.phenopackets.schema.v1.core.Individual)
switch (age_case()) {
case kAgeAtCollection: {
delete age_.age_at_collection_;
break;
}
case kAgeRangeAtCollection: {
delete age_.age_range_at_collection_;
break;
}
case AGE_NOT_SET: {
break;
}
}
_oneof_case_[0] = AGE_NOT_SET;
}
void Individual::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.Individual)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
alternate_ids_.Clear();
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (GetArenaNoVirtual() == nullptr && date_of_birth_ != nullptr) {
delete date_of_birth_;
}
date_of_birth_ = nullptr;
if (GetArenaNoVirtual() == nullptr && taxonomy_ != nullptr) {
delete taxonomy_;
}
taxonomy_ = nullptr;
::memset(&sex_, 0, static_cast(
reinterpret_cast(&karyotypic_sex_) -
reinterpret_cast(&sex_)) + sizeof(karyotypic_sex_));
clear_age();
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* Individual::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// string id = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_id(), ptr, ctx, "org.phenopackets.schema.v1.core.Individual.id");
CHK_(ptr);
} else goto handle_unusual;
continue;
// repeated string alternate_ids = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr -= 1;
do {
ptr += 1;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(add_alternate_ids(), ptr, ctx, "org.phenopackets.schema.v1.core.Individual.alternate_ids");
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 18);
} else goto handle_unusual;
continue;
// .google.protobuf.Timestamp date_of_birth = 3;
case 3:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 26)) {
ptr = ctx->ParseMessage(mutable_date_of_birth(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.Age age_at_collection = 4;
case 4:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 34)) {
ptr = ctx->ParseMessage(mutable_age_at_collection(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.AgeRange age_range_at_collection = 5;
case 5:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 42)) {
ptr = ctx->ParseMessage(mutable_age_range_at_collection(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.Sex sex = 6;
case 6:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 48)) {
::PROTOBUF_NAMESPACE_ID::uint64 val = ::PROTOBUF_NAMESPACE_ID::internal::ReadVarint(&ptr);
CHK_(ptr);
set_sex(static_cast<::org::phenopackets::schema::v1::core::Sex>(val));
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.KaryotypicSex karyotypic_sex = 7;
case 7:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 56)) {
::PROTOBUF_NAMESPACE_ID::uint64 val = ::PROTOBUF_NAMESPACE_ID::internal::ReadVarint(&ptr);
CHK_(ptr);
set_karyotypic_sex(static_cast<::org::phenopackets::schema::v1::core::KaryotypicSex>(val));
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 8;
case 8:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 66)) {
ptr = ctx->ParseMessage(mutable_taxonomy(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool Individual::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.Individual)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// string id = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_id()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Individual.id"));
} else {
goto handle_unusual;
}
break;
}
// repeated string alternate_ids = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->add_alternate_ids()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->alternate_ids(this->alternate_ids_size() - 1).data(),
static_cast(this->alternate_ids(this->alternate_ids_size() - 1).length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Individual.alternate_ids"));
} else {
goto handle_unusual;
}
break;
}
// .google.protobuf.Timestamp date_of_birth = 3;
case 3: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (26 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_date_of_birth()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.Age age_at_collection = 4;
case 4: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (34 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_age_at_collection()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_at_collection = 5;
case 5: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (42 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_age_range_at_collection()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.Sex sex = 6;
case 6: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (48 & 0xFF)) {
int value = 0;
DO_((::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadPrimitive<
int, ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::TYPE_ENUM>(
input, &value)));
set_sex(static_cast< ::org::phenopackets::schema::v1::core::Sex >(value));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.KaryotypicSex karyotypic_sex = 7;
case 7: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (56 & 0xFF)) {
int value = 0;
DO_((::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadPrimitive<
int, ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::TYPE_ENUM>(
input, &value)));
set_karyotypic_sex(static_cast< ::org::phenopackets::schema::v1::core::KaryotypicSex >(value));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 8;
case 8: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (66 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_taxonomy()));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.Individual)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.Individual)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void Individual::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.Individual)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Individual.id");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
1, this->id(), output);
}
// repeated string alternate_ids = 2;
for (int i = 0, n = this->alternate_ids_size(); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->alternate_ids(i).data(), static_cast(this->alternate_ids(i).length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Individual.alternate_ids");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteString(
2, this->alternate_ids(i), output);
}
// .google.protobuf.Timestamp date_of_birth = 3;
if (this->has_date_of_birth()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
3, HasBitSetters::date_of_birth(this), output);
}
// .org.phenopackets.schema.v1.core.Age age_at_collection = 4;
if (has_age_at_collection()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
4, HasBitSetters::age_at_collection(this), output);
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_at_collection = 5;
if (has_age_range_at_collection()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
5, HasBitSetters::age_range_at_collection(this), output);
}
// .org.phenopackets.schema.v1.core.Sex sex = 6;
if (this->sex() != 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteEnum(
6, this->sex(), output);
}
// .org.phenopackets.schema.v1.core.KaryotypicSex karyotypic_sex = 7;
if (this->karyotypic_sex() != 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteEnum(
7, this->karyotypic_sex(), output);
}
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 8;
if (this->has_taxonomy()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
8, HasBitSetters::taxonomy(this), output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.Individual)
}
::PROTOBUF_NAMESPACE_ID::uint8* Individual::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.Individual)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Individual.id");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
1, this->id(), target);
}
// repeated string alternate_ids = 2;
for (int i = 0, n = this->alternate_ids_size(); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->alternate_ids(i).data(), static_cast(this->alternate_ids(i).length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Individual.alternate_ids");
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
WriteStringToArray(2, this->alternate_ids(i), target);
}
// .google.protobuf.Timestamp date_of_birth = 3;
if (this->has_date_of_birth()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
3, HasBitSetters::date_of_birth(this), target);
}
// .org.phenopackets.schema.v1.core.Age age_at_collection = 4;
if (has_age_at_collection()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
4, HasBitSetters::age_at_collection(this), target);
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_at_collection = 5;
if (has_age_range_at_collection()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
5, HasBitSetters::age_range_at_collection(this), target);
}
// .org.phenopackets.schema.v1.core.Sex sex = 6;
if (this->sex() != 0) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteEnumToArray(
6, this->sex(), target);
}
// .org.phenopackets.schema.v1.core.KaryotypicSex karyotypic_sex = 7;
if (this->karyotypic_sex() != 0) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteEnumToArray(
7, this->karyotypic_sex(), target);
}
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 8;
if (this->has_taxonomy()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
8, HasBitSetters::taxonomy(this), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.Individual)
return target;
}
size_t Individual::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.Individual)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// repeated string alternate_ids = 2;
total_size += 1 *
::PROTOBUF_NAMESPACE_ID::internal::FromIntSize(this->alternate_ids_size());
for (int i = 0, n = this->alternate_ids_size(); i < n; i++) {
total_size += ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->alternate_ids(i));
}
// string id = 1;
if (this->id().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->id());
}
// .google.protobuf.Timestamp date_of_birth = 3;
if (this->has_date_of_birth()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*date_of_birth_);
}
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 8;
if (this->has_taxonomy()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*taxonomy_);
}
// .org.phenopackets.schema.v1.core.Sex sex = 6;
if (this->sex() != 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::EnumSize(this->sex());
}
// .org.phenopackets.schema.v1.core.KaryotypicSex karyotypic_sex = 7;
if (this->karyotypic_sex() != 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::EnumSize(this->karyotypic_sex());
}
switch (age_case()) {
// .org.phenopackets.schema.v1.core.Age age_at_collection = 4;
case kAgeAtCollection: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*age_.age_at_collection_);
break;
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_at_collection = 5;
case kAgeRangeAtCollection: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*age_.age_range_at_collection_);
break;
}
case AGE_NOT_SET: {
break;
}
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void Individual::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.Individual)
GOOGLE_DCHECK_NE(&from, this);
const Individual* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.Individual)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.Individual)
MergeFrom(*source);
}
}
void Individual::MergeFrom(const Individual& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.Individual)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
alternate_ids_.MergeFrom(from.alternate_ids_);
if (from.id().size() > 0) {
id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.id_);
}
if (from.has_date_of_birth()) {
mutable_date_of_birth()->PROTOBUF_NAMESPACE_ID::Timestamp::MergeFrom(from.date_of_birth());
}
if (from.has_taxonomy()) {
mutable_taxonomy()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.taxonomy());
}
if (from.sex() != 0) {
set_sex(from.sex());
}
if (from.karyotypic_sex() != 0) {
set_karyotypic_sex(from.karyotypic_sex());
}
switch (from.age_case()) {
case kAgeAtCollection: {
mutable_age_at_collection()->::org::phenopackets::schema::v1::core::Age::MergeFrom(from.age_at_collection());
break;
}
case kAgeRangeAtCollection: {
mutable_age_range_at_collection()->::org::phenopackets::schema::v1::core::AgeRange::MergeFrom(from.age_range_at_collection());
break;
}
case AGE_NOT_SET: {
break;
}
}
}
void Individual::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.Individual)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void Individual::CopyFrom(const Individual& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.Individual)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool Individual::IsInitialized() const {
return true;
}
void Individual::Swap(Individual* other) {
if (other == this) return;
InternalSwap(other);
}
void Individual::InternalSwap(Individual* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
alternate_ids_.InternalSwap(CastToBase(&other->alternate_ids_));
id_.Swap(&other->id_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
swap(date_of_birth_, other->date_of_birth_);
swap(taxonomy_, other->taxonomy_);
swap(sex_, other->sex_);
swap(karyotypic_sex_, other->karyotypic_sex_);
swap(age_, other->age_);
swap(_oneof_case_[0], other->_oneof_case_[0]);
}
::PROTOBUF_NAMESPACE_ID::Metadata Individual::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void Biosample::InitAsDefaultInstance() {
::org::phenopackets::schema::v1::core::_Biosample_default_instance_._instance.get_mutable()->sampled_tissue_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
::org::phenopackets::schema::v1::core::_Biosample_default_instance_._instance.get_mutable()->taxonomy_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
::org::phenopackets::schema::v1::core::_Biosample_default_instance_.age_of_individual_at_collection_ = const_cast< ::org::phenopackets::schema::v1::core::Age*>(
::org::phenopackets::schema::v1::core::Age::internal_default_instance());
::org::phenopackets::schema::v1::core::_Biosample_default_instance_.age_range_of_individual_at_collection_ = const_cast< ::org::phenopackets::schema::v1::core::AgeRange*>(
::org::phenopackets::schema::v1::core::AgeRange::internal_default_instance());
::org::phenopackets::schema::v1::core::_Biosample_default_instance_._instance.get_mutable()->histological_diagnosis_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
::org::phenopackets::schema::v1::core::_Biosample_default_instance_._instance.get_mutable()->tumor_progression_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
::org::phenopackets::schema::v1::core::_Biosample_default_instance_._instance.get_mutable()->tumor_grade_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
::org::phenopackets::schema::v1::core::_Biosample_default_instance_._instance.get_mutable()->procedure_ = const_cast< ::org::phenopackets::schema::v1::core::Procedure*>(
::org::phenopackets::schema::v1::core::Procedure::internal_default_instance());
}
class Biosample::HasBitSetters {
public:
static const ::org::phenopackets::schema::v1::core::OntologyClass& sampled_tissue(const Biosample* msg);
static const ::org::phenopackets::schema::v1::core::OntologyClass& taxonomy(const Biosample* msg);
static const ::org::phenopackets::schema::v1::core::Age& age_of_individual_at_collection(const Biosample* msg);
static const ::org::phenopackets::schema::v1::core::AgeRange& age_range_of_individual_at_collection(const Biosample* msg);
static const ::org::phenopackets::schema::v1::core::OntologyClass& histological_diagnosis(const Biosample* msg);
static const ::org::phenopackets::schema::v1::core::OntologyClass& tumor_progression(const Biosample* msg);
static const ::org::phenopackets::schema::v1::core::OntologyClass& tumor_grade(const Biosample* msg);
static const ::org::phenopackets::schema::v1::core::Procedure& procedure(const Biosample* msg);
};
const ::org::phenopackets::schema::v1::core::OntologyClass&
Biosample::HasBitSetters::sampled_tissue(const Biosample* msg) {
return *msg->sampled_tissue_;
}
const ::org::phenopackets::schema::v1::core::OntologyClass&
Biosample::HasBitSetters::taxonomy(const Biosample* msg) {
return *msg->taxonomy_;
}
const ::org::phenopackets::schema::v1::core::Age&
Biosample::HasBitSetters::age_of_individual_at_collection(const Biosample* msg) {
return *msg->individual_age_at_collection_.age_of_individual_at_collection_;
}
const ::org::phenopackets::schema::v1::core::AgeRange&
Biosample::HasBitSetters::age_range_of_individual_at_collection(const Biosample* msg) {
return *msg->individual_age_at_collection_.age_range_of_individual_at_collection_;
}
const ::org::phenopackets::schema::v1::core::OntologyClass&
Biosample::HasBitSetters::histological_diagnosis(const Biosample* msg) {
return *msg->histological_diagnosis_;
}
const ::org::phenopackets::schema::v1::core::OntologyClass&
Biosample::HasBitSetters::tumor_progression(const Biosample* msg) {
return *msg->tumor_progression_;
}
const ::org::phenopackets::schema::v1::core::OntologyClass&
Biosample::HasBitSetters::tumor_grade(const Biosample* msg) {
return *msg->tumor_grade_;
}
const ::org::phenopackets::schema::v1::core::Procedure&
Biosample::HasBitSetters::procedure(const Biosample* msg) {
return *msg->procedure_;
}
void Biosample::set_allocated_age_of_individual_at_collection(::org::phenopackets::schema::v1::core::Age* age_of_individual_at_collection) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_individual_age_at_collection();
if (age_of_individual_at_collection) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
age_of_individual_at_collection = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, age_of_individual_at_collection, submessage_arena);
}
set_has_age_of_individual_at_collection();
individual_age_at_collection_.age_of_individual_at_collection_ = age_of_individual_at_collection;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Biosample.age_of_individual_at_collection)
}
void Biosample::set_allocated_age_range_of_individual_at_collection(::org::phenopackets::schema::v1::core::AgeRange* age_range_of_individual_at_collection) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_individual_age_at_collection();
if (age_range_of_individual_at_collection) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
age_range_of_individual_at_collection = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, age_range_of_individual_at_collection, submessage_arena);
}
set_has_age_range_of_individual_at_collection();
individual_age_at_collection_.age_range_of_individual_at_collection_ = age_range_of_individual_at_collection;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Biosample.age_range_of_individual_at_collection)
}
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int Biosample::kIdFieldNumber;
const int Biosample::kIndividualIdFieldNumber;
const int Biosample::kDescriptionFieldNumber;
const int Biosample::kSampledTissueFieldNumber;
const int Biosample::kPhenotypicFeaturesFieldNumber;
const int Biosample::kTaxonomyFieldNumber;
const int Biosample::kAgeOfIndividualAtCollectionFieldNumber;
const int Biosample::kAgeRangeOfIndividualAtCollectionFieldNumber;
const int Biosample::kHistologicalDiagnosisFieldNumber;
const int Biosample::kTumorProgressionFieldNumber;
const int Biosample::kTumorGradeFieldNumber;
const int Biosample::kDiagnosticMarkersFieldNumber;
const int Biosample::kProcedureFieldNumber;
const int Biosample::kHtsFilesFieldNumber;
const int Biosample::kVariantsFieldNumber;
const int Biosample::kIsControlSampleFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
Biosample::Biosample()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.Biosample)
}
Biosample::Biosample(const Biosample& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr),
phenotypic_features_(from.phenotypic_features_),
diagnostic_markers_(from.diagnostic_markers_),
hts_files_(from.hts_files_),
variants_(from.variants_) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.id().size() > 0) {
id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.id_);
}
individual_id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.individual_id().size() > 0) {
individual_id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.individual_id_);
}
description_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.description().size() > 0) {
description_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.description_);
}
if (from.has_sampled_tissue()) {
sampled_tissue_ = new ::org::phenopackets::schema::v1::core::OntologyClass(*from.sampled_tissue_);
} else {
sampled_tissue_ = nullptr;
}
if (from.has_taxonomy()) {
taxonomy_ = new ::org::phenopackets::schema::v1::core::OntologyClass(*from.taxonomy_);
} else {
taxonomy_ = nullptr;
}
if (from.has_histological_diagnosis()) {
histological_diagnosis_ = new ::org::phenopackets::schema::v1::core::OntologyClass(*from.histological_diagnosis_);
} else {
histological_diagnosis_ = nullptr;
}
if (from.has_tumor_progression()) {
tumor_progression_ = new ::org::phenopackets::schema::v1::core::OntologyClass(*from.tumor_progression_);
} else {
tumor_progression_ = nullptr;
}
if (from.has_tumor_grade()) {
tumor_grade_ = new ::org::phenopackets::schema::v1::core::OntologyClass(*from.tumor_grade_);
} else {
tumor_grade_ = nullptr;
}
if (from.has_procedure()) {
procedure_ = new ::org::phenopackets::schema::v1::core::Procedure(*from.procedure_);
} else {
procedure_ = nullptr;
}
is_control_sample_ = from.is_control_sample_;
clear_has_individual_age_at_collection();
switch (from.individual_age_at_collection_case()) {
case kAgeOfIndividualAtCollection: {
mutable_age_of_individual_at_collection()->::org::phenopackets::schema::v1::core::Age::MergeFrom(from.age_of_individual_at_collection());
break;
}
case kAgeRangeOfIndividualAtCollection: {
mutable_age_range_of_individual_at_collection()->::org::phenopackets::schema::v1::core::AgeRange::MergeFrom(from.age_range_of_individual_at_collection());
break;
}
case INDIVIDUAL_AGE_AT_COLLECTION_NOT_SET: {
break;
}
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.Biosample)
}
void Biosample::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_Biosample_base_2eproto.base);
id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
individual_id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
description_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
::memset(&sampled_tissue_, 0, static_cast(
reinterpret_cast(&is_control_sample_) -
reinterpret_cast(&sampled_tissue_)) + sizeof(is_control_sample_));
clear_has_individual_age_at_collection();
}
Biosample::~Biosample() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.Biosample)
SharedDtor();
}
void Biosample::SharedDtor() {
id_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
individual_id_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
description_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (this != internal_default_instance()) delete sampled_tissue_;
if (this != internal_default_instance()) delete taxonomy_;
if (this != internal_default_instance()) delete histological_diagnosis_;
if (this != internal_default_instance()) delete tumor_progression_;
if (this != internal_default_instance()) delete tumor_grade_;
if (this != internal_default_instance()) delete procedure_;
if (has_individual_age_at_collection()) {
clear_individual_age_at_collection();
}
}
void Biosample::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const Biosample& Biosample::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_Biosample_base_2eproto.base);
return *internal_default_instance();
}
void Biosample::clear_individual_age_at_collection() {
// @@protoc_insertion_point(one_of_clear_start:org.phenopackets.schema.v1.core.Biosample)
switch (individual_age_at_collection_case()) {
case kAgeOfIndividualAtCollection: {
delete individual_age_at_collection_.age_of_individual_at_collection_;
break;
}
case kAgeRangeOfIndividualAtCollection: {
delete individual_age_at_collection_.age_range_of_individual_at_collection_;
break;
}
case INDIVIDUAL_AGE_AT_COLLECTION_NOT_SET: {
break;
}
}
_oneof_case_[0] = INDIVIDUAL_AGE_AT_COLLECTION_NOT_SET;
}
void Biosample::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.Biosample)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
phenotypic_features_.Clear();
diagnostic_markers_.Clear();
hts_files_.Clear();
variants_.Clear();
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
individual_id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
description_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (GetArenaNoVirtual() == nullptr && sampled_tissue_ != nullptr) {
delete sampled_tissue_;
}
sampled_tissue_ = nullptr;
if (GetArenaNoVirtual() == nullptr && taxonomy_ != nullptr) {
delete taxonomy_;
}
taxonomy_ = nullptr;
if (GetArenaNoVirtual() == nullptr && histological_diagnosis_ != nullptr) {
delete histological_diagnosis_;
}
histological_diagnosis_ = nullptr;
if (GetArenaNoVirtual() == nullptr && tumor_progression_ != nullptr) {
delete tumor_progression_;
}
tumor_progression_ = nullptr;
if (GetArenaNoVirtual() == nullptr && tumor_grade_ != nullptr) {
delete tumor_grade_;
}
tumor_grade_ = nullptr;
if (GetArenaNoVirtual() == nullptr && procedure_ != nullptr) {
delete procedure_;
}
procedure_ = nullptr;
is_control_sample_ = false;
clear_individual_age_at_collection();
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* Biosample::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// string id = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_id(), ptr, ctx, "org.phenopackets.schema.v1.core.Biosample.id");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string individual_id = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_individual_id(), ptr, ctx, "org.phenopackets.schema.v1.core.Biosample.individual_id");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string description = 3;
case 3:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 26)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_description(), ptr, ctx, "org.phenopackets.schema.v1.core.Biosample.description");
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.OntologyClass sampled_tissue = 4;
case 4:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 34)) {
ptr = ctx->ParseMessage(mutable_sampled_tissue(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// repeated .org.phenopackets.schema.v1.core.PhenotypicFeature phenotypic_features = 5;
case 5:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 42)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(add_phenotypic_features(), ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 42);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 6;
case 6:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 50)) {
ptr = ctx->ParseMessage(mutable_taxonomy(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.Age age_of_individual_at_collection = 7;
case 7:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 58)) {
ptr = ctx->ParseMessage(mutable_age_of_individual_at_collection(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_individual_at_collection = 8;
case 8:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 66)) {
ptr = ctx->ParseMessage(mutable_age_range_of_individual_at_collection(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.OntologyClass histological_diagnosis = 9;
case 9:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 74)) {
ptr = ctx->ParseMessage(mutable_histological_diagnosis(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.OntologyClass tumor_progression = 10;
case 10:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 82)) {
ptr = ctx->ParseMessage(mutable_tumor_progression(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.OntologyClass tumor_grade = 11;
case 11:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 90)) {
ptr = ctx->ParseMessage(mutable_tumor_grade(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// repeated .org.phenopackets.schema.v1.core.OntologyClass diagnostic_markers = 12;
case 12:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 98)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(add_diagnostic_markers(), ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 98);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.Procedure procedure = 13;
case 13:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 106)) {
ptr = ctx->ParseMessage(mutable_procedure(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// repeated .org.phenopackets.schema.v1.core.HtsFile hts_files = 14;
case 14:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 114)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(add_hts_files(), ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 114);
} else goto handle_unusual;
continue;
// repeated .org.phenopackets.schema.v1.core.Variant variants = 15;
case 15:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 122)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(add_variants(), ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 122);
} else goto handle_unusual;
continue;
// bool is_control_sample = 16;
case 16:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 128)) {
is_control_sample_ = ::PROTOBUF_NAMESPACE_ID::internal::ReadVarint(&ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool Biosample::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.Biosample)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(16383u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// string id = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_id()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Biosample.id"));
} else {
goto handle_unusual;
}
break;
}
// string individual_id = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_individual_id()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->individual_id().data(), static_cast(this->individual_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Biosample.individual_id"));
} else {
goto handle_unusual;
}
break;
}
// string description = 3;
case 3: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (26 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_description()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->description().data(), static_cast(this->description().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Biosample.description"));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.OntologyClass sampled_tissue = 4;
case 4: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (34 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_sampled_tissue()));
} else {
goto handle_unusual;
}
break;
}
// repeated .org.phenopackets.schema.v1.core.PhenotypicFeature phenotypic_features = 5;
case 5: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (42 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, add_phenotypic_features()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 6;
case 6: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (50 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_taxonomy()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.Age age_of_individual_at_collection = 7;
case 7: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (58 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_age_of_individual_at_collection()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_individual_at_collection = 8;
case 8: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (66 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_age_range_of_individual_at_collection()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.OntologyClass histological_diagnosis = 9;
case 9: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (74 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_histological_diagnosis()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.OntologyClass tumor_progression = 10;
case 10: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (82 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_tumor_progression()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.OntologyClass tumor_grade = 11;
case 11: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (90 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_tumor_grade()));
} else {
goto handle_unusual;
}
break;
}
// repeated .org.phenopackets.schema.v1.core.OntologyClass diagnostic_markers = 12;
case 12: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (98 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, add_diagnostic_markers()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.Procedure procedure = 13;
case 13: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (106 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_procedure()));
} else {
goto handle_unusual;
}
break;
}
// repeated .org.phenopackets.schema.v1.core.HtsFile hts_files = 14;
case 14: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (114 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, add_hts_files()));
} else {
goto handle_unusual;
}
break;
}
// repeated .org.phenopackets.schema.v1.core.Variant variants = 15;
case 15: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (122 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, add_variants()));
} else {
goto handle_unusual;
}
break;
}
// bool is_control_sample = 16;
case 16: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (128 & 0xFF)) {
DO_((::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadPrimitive<
bool, ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::TYPE_BOOL>(
input, &is_control_sample_)));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.Biosample)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.Biosample)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void Biosample::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.Biosample)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Biosample.id");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
1, this->id(), output);
}
// string individual_id = 2;
if (this->individual_id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->individual_id().data(), static_cast(this->individual_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Biosample.individual_id");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
2, this->individual_id(), output);
}
// string description = 3;
if (this->description().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->description().data(), static_cast(this->description().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Biosample.description");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
3, this->description(), output);
}
// .org.phenopackets.schema.v1.core.OntologyClass sampled_tissue = 4;
if (this->has_sampled_tissue()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
4, HasBitSetters::sampled_tissue(this), output);
}
// repeated .org.phenopackets.schema.v1.core.PhenotypicFeature phenotypic_features = 5;
for (unsigned int i = 0,
n = static_cast(this->phenotypic_features_size()); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
5,
this->phenotypic_features(static_cast(i)),
output);
}
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 6;
if (this->has_taxonomy()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
6, HasBitSetters::taxonomy(this), output);
}
// .org.phenopackets.schema.v1.core.Age age_of_individual_at_collection = 7;
if (has_age_of_individual_at_collection()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
7, HasBitSetters::age_of_individual_at_collection(this), output);
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_individual_at_collection = 8;
if (has_age_range_of_individual_at_collection()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
8, HasBitSetters::age_range_of_individual_at_collection(this), output);
}
// .org.phenopackets.schema.v1.core.OntologyClass histological_diagnosis = 9;
if (this->has_histological_diagnosis()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
9, HasBitSetters::histological_diagnosis(this), output);
}
// .org.phenopackets.schema.v1.core.OntologyClass tumor_progression = 10;
if (this->has_tumor_progression()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
10, HasBitSetters::tumor_progression(this), output);
}
// .org.phenopackets.schema.v1.core.OntologyClass tumor_grade = 11;
if (this->has_tumor_grade()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
11, HasBitSetters::tumor_grade(this), output);
}
// repeated .org.phenopackets.schema.v1.core.OntologyClass diagnostic_markers = 12;
for (unsigned int i = 0,
n = static_cast(this->diagnostic_markers_size()); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
12,
this->diagnostic_markers(static_cast(i)),
output);
}
// .org.phenopackets.schema.v1.core.Procedure procedure = 13;
if (this->has_procedure()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
13, HasBitSetters::procedure(this), output);
}
// repeated .org.phenopackets.schema.v1.core.HtsFile hts_files = 14;
for (unsigned int i = 0,
n = static_cast(this->hts_files_size()); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
14,
this->hts_files(static_cast(i)),
output);
}
// repeated .org.phenopackets.schema.v1.core.Variant variants = 15;
for (unsigned int i = 0,
n = static_cast(this->variants_size()); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
15,
this->variants(static_cast(i)),
output);
}
// bool is_control_sample = 16;
if (this->is_control_sample() != 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteBool(16, this->is_control_sample(), output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.Biosample)
}
::PROTOBUF_NAMESPACE_ID::uint8* Biosample::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.Biosample)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Biosample.id");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
1, this->id(), target);
}
// string individual_id = 2;
if (this->individual_id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->individual_id().data(), static_cast(this->individual_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Biosample.individual_id");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
2, this->individual_id(), target);
}
// string description = 3;
if (this->description().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->description().data(), static_cast(this->description().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Biosample.description");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
3, this->description(), target);
}
// .org.phenopackets.schema.v1.core.OntologyClass sampled_tissue = 4;
if (this->has_sampled_tissue()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
4, HasBitSetters::sampled_tissue(this), target);
}
// repeated .org.phenopackets.schema.v1.core.PhenotypicFeature phenotypic_features = 5;
for (unsigned int i = 0,
n = static_cast(this->phenotypic_features_size()); i < n; i++) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
5, this->phenotypic_features(static_cast(i)), target);
}
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 6;
if (this->has_taxonomy()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
6, HasBitSetters::taxonomy(this), target);
}
// .org.phenopackets.schema.v1.core.Age age_of_individual_at_collection = 7;
if (has_age_of_individual_at_collection()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
7, HasBitSetters::age_of_individual_at_collection(this), target);
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_individual_at_collection = 8;
if (has_age_range_of_individual_at_collection()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
8, HasBitSetters::age_range_of_individual_at_collection(this), target);
}
// .org.phenopackets.schema.v1.core.OntologyClass histological_diagnosis = 9;
if (this->has_histological_diagnosis()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
9, HasBitSetters::histological_diagnosis(this), target);
}
// .org.phenopackets.schema.v1.core.OntologyClass tumor_progression = 10;
if (this->has_tumor_progression()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
10, HasBitSetters::tumor_progression(this), target);
}
// .org.phenopackets.schema.v1.core.OntologyClass tumor_grade = 11;
if (this->has_tumor_grade()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
11, HasBitSetters::tumor_grade(this), target);
}
// repeated .org.phenopackets.schema.v1.core.OntologyClass diagnostic_markers = 12;
for (unsigned int i = 0,
n = static_cast(this->diagnostic_markers_size()); i < n; i++) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
12, this->diagnostic_markers(static_cast(i)), target);
}
// .org.phenopackets.schema.v1.core.Procedure procedure = 13;
if (this->has_procedure()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
13, HasBitSetters::procedure(this), target);
}
// repeated .org.phenopackets.schema.v1.core.HtsFile hts_files = 14;
for (unsigned int i = 0,
n = static_cast(this->hts_files_size()); i < n; i++) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
14, this->hts_files(static_cast(i)), target);
}
// repeated .org.phenopackets.schema.v1.core.Variant variants = 15;
for (unsigned int i = 0,
n = static_cast(this->variants_size()); i < n; i++) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
15, this->variants(static_cast(i)), target);
}
// bool is_control_sample = 16;
if (this->is_control_sample() != 0) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteBoolToArray(16, this->is_control_sample(), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.Biosample)
return target;
}
size_t Biosample::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.Biosample)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// repeated .org.phenopackets.schema.v1.core.PhenotypicFeature phenotypic_features = 5;
{
unsigned int count = static_cast(this->phenotypic_features_size());
total_size += 1UL * count;
for (unsigned int i = 0; i < count; i++) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
this->phenotypic_features(static_cast(i)));
}
}
// repeated .org.phenopackets.schema.v1.core.OntologyClass diagnostic_markers = 12;
{
unsigned int count = static_cast(this->diagnostic_markers_size());
total_size += 1UL * count;
for (unsigned int i = 0; i < count; i++) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
this->diagnostic_markers(static_cast(i)));
}
}
// repeated .org.phenopackets.schema.v1.core.HtsFile hts_files = 14;
{
unsigned int count = static_cast(this->hts_files_size());
total_size += 1UL * count;
for (unsigned int i = 0; i < count; i++) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
this->hts_files(static_cast(i)));
}
}
// repeated .org.phenopackets.schema.v1.core.Variant variants = 15;
{
unsigned int count = static_cast(this->variants_size());
total_size += 1UL * count;
for (unsigned int i = 0; i < count; i++) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
this->variants(static_cast(i)));
}
}
// string id = 1;
if (this->id().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->id());
}
// string individual_id = 2;
if (this->individual_id().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->individual_id());
}
// string description = 3;
if (this->description().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->description());
}
// .org.phenopackets.schema.v1.core.OntologyClass sampled_tissue = 4;
if (this->has_sampled_tissue()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*sampled_tissue_);
}
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 6;
if (this->has_taxonomy()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*taxonomy_);
}
// .org.phenopackets.schema.v1.core.OntologyClass histological_diagnosis = 9;
if (this->has_histological_diagnosis()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*histological_diagnosis_);
}
// .org.phenopackets.schema.v1.core.OntologyClass tumor_progression = 10;
if (this->has_tumor_progression()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*tumor_progression_);
}
// .org.phenopackets.schema.v1.core.OntologyClass tumor_grade = 11;
if (this->has_tumor_grade()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*tumor_grade_);
}
// .org.phenopackets.schema.v1.core.Procedure procedure = 13;
if (this->has_procedure()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*procedure_);
}
// bool is_control_sample = 16;
if (this->is_control_sample() != 0) {
total_size += 2 + 1;
}
switch (individual_age_at_collection_case()) {
// .org.phenopackets.schema.v1.core.Age age_of_individual_at_collection = 7;
case kAgeOfIndividualAtCollection: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*individual_age_at_collection_.age_of_individual_at_collection_);
break;
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_individual_at_collection = 8;
case kAgeRangeOfIndividualAtCollection: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*individual_age_at_collection_.age_range_of_individual_at_collection_);
break;
}
case INDIVIDUAL_AGE_AT_COLLECTION_NOT_SET: {
break;
}
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void Biosample::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.Biosample)
GOOGLE_DCHECK_NE(&from, this);
const Biosample* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.Biosample)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.Biosample)
MergeFrom(*source);
}
}
void Biosample::MergeFrom(const Biosample& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.Biosample)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
phenotypic_features_.MergeFrom(from.phenotypic_features_);
diagnostic_markers_.MergeFrom(from.diagnostic_markers_);
hts_files_.MergeFrom(from.hts_files_);
variants_.MergeFrom(from.variants_);
if (from.id().size() > 0) {
id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.id_);
}
if (from.individual_id().size() > 0) {
individual_id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.individual_id_);
}
if (from.description().size() > 0) {
description_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.description_);
}
if (from.has_sampled_tissue()) {
mutable_sampled_tissue()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.sampled_tissue());
}
if (from.has_taxonomy()) {
mutable_taxonomy()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.taxonomy());
}
if (from.has_histological_diagnosis()) {
mutable_histological_diagnosis()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.histological_diagnosis());
}
if (from.has_tumor_progression()) {
mutable_tumor_progression()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.tumor_progression());
}
if (from.has_tumor_grade()) {
mutable_tumor_grade()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.tumor_grade());
}
if (from.has_procedure()) {
mutable_procedure()->::org::phenopackets::schema::v1::core::Procedure::MergeFrom(from.procedure());
}
if (from.is_control_sample() != 0) {
set_is_control_sample(from.is_control_sample());
}
switch (from.individual_age_at_collection_case()) {
case kAgeOfIndividualAtCollection: {
mutable_age_of_individual_at_collection()->::org::phenopackets::schema::v1::core::Age::MergeFrom(from.age_of_individual_at_collection());
break;
}
case kAgeRangeOfIndividualAtCollection: {
mutable_age_range_of_individual_at_collection()->::org::phenopackets::schema::v1::core::AgeRange::MergeFrom(from.age_range_of_individual_at_collection());
break;
}
case INDIVIDUAL_AGE_AT_COLLECTION_NOT_SET: {
break;
}
}
}
void Biosample::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.Biosample)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void Biosample::CopyFrom(const Biosample& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.Biosample)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool Biosample::IsInitialized() const {
return true;
}
void Biosample::Swap(Biosample* other) {
if (other == this) return;
InternalSwap(other);
}
void Biosample::InternalSwap(Biosample* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
CastToBase(&phenotypic_features_)->InternalSwap(CastToBase(&other->phenotypic_features_));
CastToBase(&diagnostic_markers_)->InternalSwap(CastToBase(&other->diagnostic_markers_));
CastToBase(&hts_files_)->InternalSwap(CastToBase(&other->hts_files_));
CastToBase(&variants_)->InternalSwap(CastToBase(&other->variants_));
id_.Swap(&other->id_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
individual_id_.Swap(&other->individual_id_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
description_.Swap(&other->description_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
swap(sampled_tissue_, other->sampled_tissue_);
swap(taxonomy_, other->taxonomy_);
swap(histological_diagnosis_, other->histological_diagnosis_);
swap(tumor_progression_, other->tumor_progression_);
swap(tumor_grade_, other->tumor_grade_);
swap(procedure_, other->procedure_);
swap(is_control_sample_, other->is_control_sample_);
swap(individual_age_at_collection_, other->individual_age_at_collection_);
swap(_oneof_case_[0], other->_oneof_case_[0]);
}
::PROTOBUF_NAMESPACE_ID::Metadata Biosample::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void Procedure::InitAsDefaultInstance() {
::org::phenopackets::schema::v1::core::_Procedure_default_instance_._instance.get_mutable()->code_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
::org::phenopackets::schema::v1::core::_Procedure_default_instance_._instance.get_mutable()->body_site_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
}
class Procedure::HasBitSetters {
public:
static const ::org::phenopackets::schema::v1::core::OntologyClass& code(const Procedure* msg);
static const ::org::phenopackets::schema::v1::core::OntologyClass& body_site(const Procedure* msg);
};
const ::org::phenopackets::schema::v1::core::OntologyClass&
Procedure::HasBitSetters::code(const Procedure* msg) {
return *msg->code_;
}
const ::org::phenopackets::schema::v1::core::OntologyClass&
Procedure::HasBitSetters::body_site(const Procedure* msg) {
return *msg->body_site_;
}
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int Procedure::kCodeFieldNumber;
const int Procedure::kBodySiteFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
Procedure::Procedure()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.Procedure)
}
Procedure::Procedure(const Procedure& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
if (from.has_code()) {
code_ = new ::org::phenopackets::schema::v1::core::OntologyClass(*from.code_);
} else {
code_ = nullptr;
}
if (from.has_body_site()) {
body_site_ = new ::org::phenopackets::schema::v1::core::OntologyClass(*from.body_site_);
} else {
body_site_ = nullptr;
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.Procedure)
}
void Procedure::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_Procedure_base_2eproto.base);
::memset(&code_, 0, static_cast(
reinterpret_cast(&body_site_) -
reinterpret_cast(&code_)) + sizeof(body_site_));
}
Procedure::~Procedure() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.Procedure)
SharedDtor();
}
void Procedure::SharedDtor() {
if (this != internal_default_instance()) delete code_;
if (this != internal_default_instance()) delete body_site_;
}
void Procedure::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const Procedure& Procedure::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_Procedure_base_2eproto.base);
return *internal_default_instance();
}
void Procedure::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.Procedure)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
if (GetArenaNoVirtual() == nullptr && code_ != nullptr) {
delete code_;
}
code_ = nullptr;
if (GetArenaNoVirtual() == nullptr && body_site_ != nullptr) {
delete body_site_;
}
body_site_ = nullptr;
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* Procedure::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// .org.phenopackets.schema.v1.core.OntologyClass code = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ctx->ParseMessage(mutable_code(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.OntologyClass body_site = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ctx->ParseMessage(mutable_body_site(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool Procedure::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.Procedure)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// .org.phenopackets.schema.v1.core.OntologyClass code = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_code()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.OntologyClass body_site = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_body_site()));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.Procedure)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.Procedure)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void Procedure::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.Procedure)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .org.phenopackets.schema.v1.core.OntologyClass code = 1;
if (this->has_code()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
1, HasBitSetters::code(this), output);
}
// .org.phenopackets.schema.v1.core.OntologyClass body_site = 2;
if (this->has_body_site()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
2, HasBitSetters::body_site(this), output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.Procedure)
}
::PROTOBUF_NAMESPACE_ID::uint8* Procedure::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.Procedure)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .org.phenopackets.schema.v1.core.OntologyClass code = 1;
if (this->has_code()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
1, HasBitSetters::code(this), target);
}
// .org.phenopackets.schema.v1.core.OntologyClass body_site = 2;
if (this->has_body_site()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
2, HasBitSetters::body_site(this), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.Procedure)
return target;
}
size_t Procedure::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.Procedure)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// .org.phenopackets.schema.v1.core.OntologyClass code = 1;
if (this->has_code()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*code_);
}
// .org.phenopackets.schema.v1.core.OntologyClass body_site = 2;
if (this->has_body_site()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*body_site_);
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void Procedure::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.Procedure)
GOOGLE_DCHECK_NE(&from, this);
const Procedure* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.Procedure)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.Procedure)
MergeFrom(*source);
}
}
void Procedure::MergeFrom(const Procedure& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.Procedure)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
if (from.has_code()) {
mutable_code()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.code());
}
if (from.has_body_site()) {
mutable_body_site()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.body_site());
}
}
void Procedure::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.Procedure)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void Procedure::CopyFrom(const Procedure& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.Procedure)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool Procedure::IsInitialized() const {
return true;
}
void Procedure::Swap(Procedure* other) {
if (other == this) return;
InternalSwap(other);
}
void Procedure::InternalSwap(Procedure* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
swap(code_, other->code_);
swap(body_site_, other->body_site_);
}
::PROTOBUF_NAMESPACE_ID::Metadata Procedure::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void Age::InitAsDefaultInstance() {
}
class Age::HasBitSetters {
public:
};
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int Age::kAgeFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
Age::Age()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.Age)
}
Age::Age(const Age& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
age_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.age().size() > 0) {
age_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.age_);
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.Age)
}
void Age::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_Age_base_2eproto.base);
age_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
Age::~Age() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.Age)
SharedDtor();
}
void Age::SharedDtor() {
age_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
void Age::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const Age& Age::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_Age_base_2eproto.base);
return *internal_default_instance();
}
void Age::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.Age)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
age_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* Age::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// string age = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_age(), ptr, ctx, "org.phenopackets.schema.v1.core.Age.age");
CHK_(ptr);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool Age::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.Age)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// string age = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_age()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->age().data(), static_cast(this->age().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Age.age"));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.Age)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.Age)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void Age::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.Age)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string age = 1;
if (this->age().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->age().data(), static_cast(this->age().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Age.age");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
1, this->age(), output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.Age)
}
::PROTOBUF_NAMESPACE_ID::uint8* Age::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.Age)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string age = 1;
if (this->age().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->age().data(), static_cast(this->age().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Age.age");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
1, this->age(), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.Age)
return target;
}
size_t Age::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.Age)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// string age = 1;
if (this->age().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->age());
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void Age::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.Age)
GOOGLE_DCHECK_NE(&from, this);
const Age* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.Age)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.Age)
MergeFrom(*source);
}
}
void Age::MergeFrom(const Age& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.Age)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
if (from.age().size() > 0) {
age_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.age_);
}
}
void Age::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.Age)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void Age::CopyFrom(const Age& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.Age)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool Age::IsInitialized() const {
return true;
}
void Age::Swap(Age* other) {
if (other == this) return;
InternalSwap(other);
}
void Age::InternalSwap(Age* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
age_.Swap(&other->age_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
}
::PROTOBUF_NAMESPACE_ID::Metadata Age::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void AgeRange::InitAsDefaultInstance() {
::org::phenopackets::schema::v1::core::_AgeRange_default_instance_._instance.get_mutable()->start_ = const_cast< ::org::phenopackets::schema::v1::core::Age*>(
::org::phenopackets::schema::v1::core::Age::internal_default_instance());
::org::phenopackets::schema::v1::core::_AgeRange_default_instance_._instance.get_mutable()->end_ = const_cast< ::org::phenopackets::schema::v1::core::Age*>(
::org::phenopackets::schema::v1::core::Age::internal_default_instance());
}
class AgeRange::HasBitSetters {
public:
static const ::org::phenopackets::schema::v1::core::Age& start(const AgeRange* msg);
static const ::org::phenopackets::schema::v1::core::Age& end(const AgeRange* msg);
};
const ::org::phenopackets::schema::v1::core::Age&
AgeRange::HasBitSetters::start(const AgeRange* msg) {
return *msg->start_;
}
const ::org::phenopackets::schema::v1::core::Age&
AgeRange::HasBitSetters::end(const AgeRange* msg) {
return *msg->end_;
}
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int AgeRange::kStartFieldNumber;
const int AgeRange::kEndFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
AgeRange::AgeRange()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.AgeRange)
}
AgeRange::AgeRange(const AgeRange& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
if (from.has_start()) {
start_ = new ::org::phenopackets::schema::v1::core::Age(*from.start_);
} else {
start_ = nullptr;
}
if (from.has_end()) {
end_ = new ::org::phenopackets::schema::v1::core::Age(*from.end_);
} else {
end_ = nullptr;
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.AgeRange)
}
void AgeRange::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_AgeRange_base_2eproto.base);
::memset(&start_, 0, static_cast(
reinterpret_cast(&end_) -
reinterpret_cast(&start_)) + sizeof(end_));
}
AgeRange::~AgeRange() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.AgeRange)
SharedDtor();
}
void AgeRange::SharedDtor() {
if (this != internal_default_instance()) delete start_;
if (this != internal_default_instance()) delete end_;
}
void AgeRange::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const AgeRange& AgeRange::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_AgeRange_base_2eproto.base);
return *internal_default_instance();
}
void AgeRange::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.AgeRange)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
if (GetArenaNoVirtual() == nullptr && start_ != nullptr) {
delete start_;
}
start_ = nullptr;
if (GetArenaNoVirtual() == nullptr && end_ != nullptr) {
delete end_;
}
end_ = nullptr;
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* AgeRange::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// .org.phenopackets.schema.v1.core.Age start = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ctx->ParseMessage(mutable_start(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.Age end = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ctx->ParseMessage(mutable_end(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool AgeRange::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.AgeRange)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// .org.phenopackets.schema.v1.core.Age start = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_start()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.Age end = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_end()));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.AgeRange)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.AgeRange)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void AgeRange::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.AgeRange)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .org.phenopackets.schema.v1.core.Age start = 1;
if (this->has_start()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
1, HasBitSetters::start(this), output);
}
// .org.phenopackets.schema.v1.core.Age end = 2;
if (this->has_end()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
2, HasBitSetters::end(this), output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.AgeRange)
}
::PROTOBUF_NAMESPACE_ID::uint8* AgeRange::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.AgeRange)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .org.phenopackets.schema.v1.core.Age start = 1;
if (this->has_start()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
1, HasBitSetters::start(this), target);
}
// .org.phenopackets.schema.v1.core.Age end = 2;
if (this->has_end()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
2, HasBitSetters::end(this), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.AgeRange)
return target;
}
size_t AgeRange::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.AgeRange)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// .org.phenopackets.schema.v1.core.Age start = 1;
if (this->has_start()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*start_);
}
// .org.phenopackets.schema.v1.core.Age end = 2;
if (this->has_end()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*end_);
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void AgeRange::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.AgeRange)
GOOGLE_DCHECK_NE(&from, this);
const AgeRange* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.AgeRange)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.AgeRange)
MergeFrom(*source);
}
}
void AgeRange::MergeFrom(const AgeRange& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.AgeRange)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
if (from.has_start()) {
mutable_start()->::org::phenopackets::schema::v1::core::Age::MergeFrom(from.start());
}
if (from.has_end()) {
mutable_end()->::org::phenopackets::schema::v1::core::Age::MergeFrom(from.end());
}
}
void AgeRange::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.AgeRange)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void AgeRange::CopyFrom(const AgeRange& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.AgeRange)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool AgeRange::IsInitialized() const {
return true;
}
void AgeRange::Swap(AgeRange* other) {
if (other == this) return;
InternalSwap(other);
}
void AgeRange::InternalSwap(AgeRange* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
swap(start_, other->start_);
swap(end_, other->end_);
}
::PROTOBUF_NAMESPACE_ID::Metadata AgeRange::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void Disease::InitAsDefaultInstance() {
::org::phenopackets::schema::v1::core::_Disease_default_instance_._instance.get_mutable()->term_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
::org::phenopackets::schema::v1::core::_Disease_default_instance_.age_of_onset_ = const_cast< ::org::phenopackets::schema::v1::core::Age*>(
::org::phenopackets::schema::v1::core::Age::internal_default_instance());
::org::phenopackets::schema::v1::core::_Disease_default_instance_.age_range_of_onset_ = const_cast< ::org::phenopackets::schema::v1::core::AgeRange*>(
::org::phenopackets::schema::v1::core::AgeRange::internal_default_instance());
::org::phenopackets::schema::v1::core::_Disease_default_instance_.class_of_onset_ = const_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(
::org::phenopackets::schema::v1::core::OntologyClass::internal_default_instance());
}
class Disease::HasBitSetters {
public:
static const ::org::phenopackets::schema::v1::core::OntologyClass& term(const Disease* msg);
static const ::org::phenopackets::schema::v1::core::Age& age_of_onset(const Disease* msg);
static const ::org::phenopackets::schema::v1::core::AgeRange& age_range_of_onset(const Disease* msg);
static const ::org::phenopackets::schema::v1::core::OntologyClass& class_of_onset(const Disease* msg);
};
const ::org::phenopackets::schema::v1::core::OntologyClass&
Disease::HasBitSetters::term(const Disease* msg) {
return *msg->term_;
}
const ::org::phenopackets::schema::v1::core::Age&
Disease::HasBitSetters::age_of_onset(const Disease* msg) {
return *msg->onset_.age_of_onset_;
}
const ::org::phenopackets::schema::v1::core::AgeRange&
Disease::HasBitSetters::age_range_of_onset(const Disease* msg) {
return *msg->onset_.age_range_of_onset_;
}
const ::org::phenopackets::schema::v1::core::OntologyClass&
Disease::HasBitSetters::class_of_onset(const Disease* msg) {
return *msg->onset_.class_of_onset_;
}
void Disease::set_allocated_age_of_onset(::org::phenopackets::schema::v1::core::Age* age_of_onset) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_onset();
if (age_of_onset) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
age_of_onset = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, age_of_onset, submessage_arena);
}
set_has_age_of_onset();
onset_.age_of_onset_ = age_of_onset;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Disease.age_of_onset)
}
void Disease::set_allocated_age_range_of_onset(::org::phenopackets::schema::v1::core::AgeRange* age_range_of_onset) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_onset();
if (age_range_of_onset) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
age_range_of_onset = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, age_range_of_onset, submessage_arena);
}
set_has_age_range_of_onset();
onset_.age_range_of_onset_ = age_range_of_onset;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Disease.age_range_of_onset)
}
void Disease::set_allocated_class_of_onset(::org::phenopackets::schema::v1::core::OntologyClass* class_of_onset) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_onset();
if (class_of_onset) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
class_of_onset = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, class_of_onset, submessage_arena);
}
set_has_class_of_onset();
onset_.class_of_onset_ = class_of_onset;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Disease.class_of_onset)
}
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int Disease::kTermFieldNumber;
const int Disease::kAgeOfOnsetFieldNumber;
const int Disease::kAgeRangeOfOnsetFieldNumber;
const int Disease::kClassOfOnsetFieldNumber;
const int Disease::kTumorStageFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
Disease::Disease()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.Disease)
}
Disease::Disease(const Disease& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr),
tumor_stage_(from.tumor_stage_) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
if (from.has_term()) {
term_ = new ::org::phenopackets::schema::v1::core::OntologyClass(*from.term_);
} else {
term_ = nullptr;
}
clear_has_onset();
switch (from.onset_case()) {
case kAgeOfOnset: {
mutable_age_of_onset()->::org::phenopackets::schema::v1::core::Age::MergeFrom(from.age_of_onset());
break;
}
case kAgeRangeOfOnset: {
mutable_age_range_of_onset()->::org::phenopackets::schema::v1::core::AgeRange::MergeFrom(from.age_range_of_onset());
break;
}
case kClassOfOnset: {
mutable_class_of_onset()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.class_of_onset());
break;
}
case ONSET_NOT_SET: {
break;
}
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.Disease)
}
void Disease::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_Disease_base_2eproto.base);
term_ = nullptr;
clear_has_onset();
}
Disease::~Disease() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.Disease)
SharedDtor();
}
void Disease::SharedDtor() {
if (this != internal_default_instance()) delete term_;
if (has_onset()) {
clear_onset();
}
}
void Disease::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const Disease& Disease::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_Disease_base_2eproto.base);
return *internal_default_instance();
}
void Disease::clear_onset() {
// @@protoc_insertion_point(one_of_clear_start:org.phenopackets.schema.v1.core.Disease)
switch (onset_case()) {
case kAgeOfOnset: {
delete onset_.age_of_onset_;
break;
}
case kAgeRangeOfOnset: {
delete onset_.age_range_of_onset_;
break;
}
case kClassOfOnset: {
delete onset_.class_of_onset_;
break;
}
case ONSET_NOT_SET: {
break;
}
}
_oneof_case_[0] = ONSET_NOT_SET;
}
void Disease::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.Disease)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
tumor_stage_.Clear();
if (GetArenaNoVirtual() == nullptr && term_ != nullptr) {
delete term_;
}
term_ = nullptr;
clear_onset();
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* Disease::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// .org.phenopackets.schema.v1.core.OntologyClass term = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ctx->ParseMessage(mutable_term(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ctx->ParseMessage(mutable_age_of_onset(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
case 3:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 26)) {
ptr = ctx->ParseMessage(mutable_age_range_of_onset(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
case 4:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 34)) {
ptr = ctx->ParseMessage(mutable_class_of_onset(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
case 5:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 42)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(add_tumor_stage(), ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 42);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool Disease::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.Disease)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// .org.phenopackets.schema.v1.core.OntologyClass term = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_term()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_age_of_onset()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
case 3: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (26 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_age_range_of_onset()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
case 4: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (34 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_class_of_onset()));
} else {
goto handle_unusual;
}
break;
}
// repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
case 5: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (42 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, add_tumor_stage()));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.Disease)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.Disease)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void Disease::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.Disease)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .org.phenopackets.schema.v1.core.OntologyClass term = 1;
if (this->has_term()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
1, HasBitSetters::term(this), output);
}
// .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
if (has_age_of_onset()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
2, HasBitSetters::age_of_onset(this), output);
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
if (has_age_range_of_onset()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
3, HasBitSetters::age_range_of_onset(this), output);
}
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
if (has_class_of_onset()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
4, HasBitSetters::class_of_onset(this), output);
}
// repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
for (unsigned int i = 0,
n = static_cast(this->tumor_stage_size()); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
5,
this->tumor_stage(static_cast(i)),
output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.Disease)
}
::PROTOBUF_NAMESPACE_ID::uint8* Disease::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.Disease)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .org.phenopackets.schema.v1.core.OntologyClass term = 1;
if (this->has_term()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
1, HasBitSetters::term(this), target);
}
// .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
if (has_age_of_onset()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
2, HasBitSetters::age_of_onset(this), target);
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
if (has_age_range_of_onset()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
3, HasBitSetters::age_range_of_onset(this), target);
}
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
if (has_class_of_onset()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
4, HasBitSetters::class_of_onset(this), target);
}
// repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
for (unsigned int i = 0,
n = static_cast(this->tumor_stage_size()); i < n; i++) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
5, this->tumor_stage(static_cast(i)), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.Disease)
return target;
}
size_t Disease::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.Disease)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
{
unsigned int count = static_cast(this->tumor_stage_size());
total_size += 1UL * count;
for (unsigned int i = 0; i < count; i++) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
this->tumor_stage(static_cast(i)));
}
}
// .org.phenopackets.schema.v1.core.OntologyClass term = 1;
if (this->has_term()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*term_);
}
switch (onset_case()) {
// .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
case kAgeOfOnset: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*onset_.age_of_onset_);
break;
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
case kAgeRangeOfOnset: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*onset_.age_range_of_onset_);
break;
}
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
case kClassOfOnset: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*onset_.class_of_onset_);
break;
}
case ONSET_NOT_SET: {
break;
}
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void Disease::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.Disease)
GOOGLE_DCHECK_NE(&from, this);
const Disease* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.Disease)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.Disease)
MergeFrom(*source);
}
}
void Disease::MergeFrom(const Disease& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.Disease)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
tumor_stage_.MergeFrom(from.tumor_stage_);
if (from.has_term()) {
mutable_term()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.term());
}
switch (from.onset_case()) {
case kAgeOfOnset: {
mutable_age_of_onset()->::org::phenopackets::schema::v1::core::Age::MergeFrom(from.age_of_onset());
break;
}
case kAgeRangeOfOnset: {
mutable_age_range_of_onset()->::org::phenopackets::schema::v1::core::AgeRange::MergeFrom(from.age_range_of_onset());
break;
}
case kClassOfOnset: {
mutable_class_of_onset()->::org::phenopackets::schema::v1::core::OntologyClass::MergeFrom(from.class_of_onset());
break;
}
case ONSET_NOT_SET: {
break;
}
}
}
void Disease::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.Disease)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void Disease::CopyFrom(const Disease& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.Disease)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool Disease::IsInitialized() const {
return true;
}
void Disease::Swap(Disease* other) {
if (other == this) return;
InternalSwap(other);
}
void Disease::InternalSwap(Disease* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
CastToBase(&tumor_stage_)->InternalSwap(CastToBase(&other->tumor_stage_));
swap(term_, other->term_);
swap(onset_, other->onset_);
swap(_oneof_case_[0], other->_oneof_case_[0]);
}
::PROTOBUF_NAMESPACE_ID::Metadata Disease::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void Pedigree_Person::InitAsDefaultInstance() {
}
class Pedigree_Person::HasBitSetters {
public:
};
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int Pedigree_Person::kFamilyIdFieldNumber;
const int Pedigree_Person::kIndividualIdFieldNumber;
const int Pedigree_Person::kPaternalIdFieldNumber;
const int Pedigree_Person::kMaternalIdFieldNumber;
const int Pedigree_Person::kSexFieldNumber;
const int Pedigree_Person::kAffectedStatusFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
Pedigree_Person::Pedigree_Person()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.Pedigree.Person)
}
Pedigree_Person::Pedigree_Person(const Pedigree_Person& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
family_id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.family_id().size() > 0) {
family_id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.family_id_);
}
individual_id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.individual_id().size() > 0) {
individual_id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.individual_id_);
}
paternal_id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.paternal_id().size() > 0) {
paternal_id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.paternal_id_);
}
maternal_id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.maternal_id().size() > 0) {
maternal_id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.maternal_id_);
}
::memcpy(&sex_, &from.sex_,
static_cast(reinterpret_cast(&affected_status_) -
reinterpret_cast(&sex_)) + sizeof(affected_status_));
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.Pedigree.Person)
}
void Pedigree_Person::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_Pedigree_Person_base_2eproto.base);
family_id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
individual_id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
paternal_id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
maternal_id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
::memset(&sex_, 0, static_cast(
reinterpret_cast(&affected_status_) -
reinterpret_cast(&sex_)) + sizeof(affected_status_));
}
Pedigree_Person::~Pedigree_Person() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.Pedigree.Person)
SharedDtor();
}
void Pedigree_Person::SharedDtor() {
family_id_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
individual_id_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
paternal_id_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
maternal_id_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
void Pedigree_Person::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const Pedigree_Person& Pedigree_Person::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_Pedigree_Person_base_2eproto.base);
return *internal_default_instance();
}
void Pedigree_Person::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.Pedigree.Person)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
family_id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
individual_id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
paternal_id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
maternal_id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
::memset(&sex_, 0, static_cast(
reinterpret_cast(&affected_status_) -
reinterpret_cast(&sex_)) + sizeof(affected_status_));
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* Pedigree_Person::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// string family_id = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_family_id(), ptr, ctx, "org.phenopackets.schema.v1.core.Pedigree.Person.family_id");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string individual_id = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_individual_id(), ptr, ctx, "org.phenopackets.schema.v1.core.Pedigree.Person.individual_id");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string paternal_id = 3;
case 3:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 26)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_paternal_id(), ptr, ctx, "org.phenopackets.schema.v1.core.Pedigree.Person.paternal_id");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string maternal_id = 4;
case 4:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 34)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_maternal_id(), ptr, ctx, "org.phenopackets.schema.v1.core.Pedigree.Person.maternal_id");
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.Sex sex = 5;
case 5:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 40)) {
::PROTOBUF_NAMESPACE_ID::uint64 val = ::PROTOBUF_NAMESPACE_ID::internal::ReadVarint(&ptr);
CHK_(ptr);
set_sex(static_cast<::org::phenopackets::schema::v1::core::Sex>(val));
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
case 6:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 48)) {
::PROTOBUF_NAMESPACE_ID::uint64 val = ::PROTOBUF_NAMESPACE_ID::internal::ReadVarint(&ptr);
CHK_(ptr);
set_affected_status(static_cast<::org::phenopackets::schema::v1::core::Pedigree_Person_AffectedStatus>(val));
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool Pedigree_Person::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.Pedigree.Person)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// string family_id = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_family_id()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->family_id().data(), static_cast(this->family_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Pedigree.Person.family_id"));
} else {
goto handle_unusual;
}
break;
}
// string individual_id = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_individual_id()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->individual_id().data(), static_cast(this->individual_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Pedigree.Person.individual_id"));
} else {
goto handle_unusual;
}
break;
}
// string paternal_id = 3;
case 3: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (26 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_paternal_id()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->paternal_id().data(), static_cast(this->paternal_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Pedigree.Person.paternal_id"));
} else {
goto handle_unusual;
}
break;
}
// string maternal_id = 4;
case 4: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (34 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_maternal_id()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->maternal_id().data(), static_cast(this->maternal_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.Pedigree.Person.maternal_id"));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.Sex sex = 5;
case 5: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (40 & 0xFF)) {
int value = 0;
DO_((::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadPrimitive<
int, ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::TYPE_ENUM>(
input, &value)));
set_sex(static_cast< ::org::phenopackets::schema::v1::core::Sex >(value));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
case 6: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (48 & 0xFF)) {
int value = 0;
DO_((::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadPrimitive<
int, ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::TYPE_ENUM>(
input, &value)));
set_affected_status(static_cast< ::org::phenopackets::schema::v1::core::Pedigree_Person_AffectedStatus >(value));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.Pedigree.Person)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.Pedigree.Person)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void Pedigree_Person::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.Pedigree.Person)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string family_id = 1;
if (this->family_id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->family_id().data(), static_cast(this->family_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Pedigree.Person.family_id");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
1, this->family_id(), output);
}
// string individual_id = 2;
if (this->individual_id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->individual_id().data(), static_cast(this->individual_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Pedigree.Person.individual_id");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
2, this->individual_id(), output);
}
// string paternal_id = 3;
if (this->paternal_id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->paternal_id().data(), static_cast(this->paternal_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Pedigree.Person.paternal_id");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
3, this->paternal_id(), output);
}
// string maternal_id = 4;
if (this->maternal_id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->maternal_id().data(), static_cast(this->maternal_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Pedigree.Person.maternal_id");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
4, this->maternal_id(), output);
}
// .org.phenopackets.schema.v1.core.Sex sex = 5;
if (this->sex() != 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteEnum(
5, this->sex(), output);
}
// .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
if (this->affected_status() != 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteEnum(
6, this->affected_status(), output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.Pedigree.Person)
}
::PROTOBUF_NAMESPACE_ID::uint8* Pedigree_Person::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.Pedigree.Person)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string family_id = 1;
if (this->family_id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->family_id().data(), static_cast(this->family_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Pedigree.Person.family_id");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
1, this->family_id(), target);
}
// string individual_id = 2;
if (this->individual_id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->individual_id().data(), static_cast(this->individual_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Pedigree.Person.individual_id");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
2, this->individual_id(), target);
}
// string paternal_id = 3;
if (this->paternal_id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->paternal_id().data(), static_cast(this->paternal_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Pedigree.Person.paternal_id");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
3, this->paternal_id(), target);
}
// string maternal_id = 4;
if (this->maternal_id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->maternal_id().data(), static_cast(this->maternal_id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.core.Pedigree.Person.maternal_id");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
4, this->maternal_id(), target);
}
// .org.phenopackets.schema.v1.core.Sex sex = 5;
if (this->sex() != 0) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteEnumToArray(
5, this->sex(), target);
}
// .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
if (this->affected_status() != 0) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteEnumToArray(
6, this->affected_status(), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.Pedigree.Person)
return target;
}
size_t Pedigree_Person::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.Pedigree.Person)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// string family_id = 1;
if (this->family_id().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->family_id());
}
// string individual_id = 2;
if (this->individual_id().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->individual_id());
}
// string paternal_id = 3;
if (this->paternal_id().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->paternal_id());
}
// string maternal_id = 4;
if (this->maternal_id().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->maternal_id());
}
// .org.phenopackets.schema.v1.core.Sex sex = 5;
if (this->sex() != 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::EnumSize(this->sex());
}
// .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
if (this->affected_status() != 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::EnumSize(this->affected_status());
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void Pedigree_Person::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.Pedigree.Person)
GOOGLE_DCHECK_NE(&from, this);
const Pedigree_Person* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.Pedigree.Person)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.Pedigree.Person)
MergeFrom(*source);
}
}
void Pedigree_Person::MergeFrom(const Pedigree_Person& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.Pedigree.Person)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
if (from.family_id().size() > 0) {
family_id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.family_id_);
}
if (from.individual_id().size() > 0) {
individual_id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.individual_id_);
}
if (from.paternal_id().size() > 0) {
paternal_id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.paternal_id_);
}
if (from.maternal_id().size() > 0) {
maternal_id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.maternal_id_);
}
if (from.sex() != 0) {
set_sex(from.sex());
}
if (from.affected_status() != 0) {
set_affected_status(from.affected_status());
}
}
void Pedigree_Person::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.Pedigree.Person)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void Pedigree_Person::CopyFrom(const Pedigree_Person& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.Pedigree.Person)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool Pedigree_Person::IsInitialized() const {
return true;
}
void Pedigree_Person::Swap(Pedigree_Person* other) {
if (other == this) return;
InternalSwap(other);
}
void Pedigree_Person::InternalSwap(Pedigree_Person* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
family_id_.Swap(&other->family_id_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
individual_id_.Swap(&other->individual_id_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
paternal_id_.Swap(&other->paternal_id_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
maternal_id_.Swap(&other->maternal_id_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
swap(sex_, other->sex_);
swap(affected_status_, other->affected_status_);
}
::PROTOBUF_NAMESPACE_ID::Metadata Pedigree_Person::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void Pedigree::InitAsDefaultInstance() {
}
class Pedigree::HasBitSetters {
public:
};
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int Pedigree::kPersonsFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
Pedigree::Pedigree()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.Pedigree)
}
Pedigree::Pedigree(const Pedigree& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr),
persons_(from.persons_) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.Pedigree)
}
void Pedigree::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_Pedigree_base_2eproto.base);
}
Pedigree::~Pedigree() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.Pedigree)
SharedDtor();
}
void Pedigree::SharedDtor() {
}
void Pedigree::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const Pedigree& Pedigree::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_Pedigree_base_2eproto.base);
return *internal_default_instance();
}
void Pedigree::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.Pedigree)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
persons_.Clear();
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* Pedigree::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(add_persons(), ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 10);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool Pedigree::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.Pedigree)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, add_persons()));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.core.Pedigree)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.core.Pedigree)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void Pedigree::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.core.Pedigree)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
for (unsigned int i = 0,
n = static_cast(this->persons_size()); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
1,
this->persons(static_cast(i)),
output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.core.Pedigree)
}
::PROTOBUF_NAMESPACE_ID::uint8* Pedigree::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.core.Pedigree)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
for (unsigned int i = 0,
n = static_cast(this->persons_size()); i < n; i++) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
1, this->persons(static_cast(i)), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.core.Pedigree)
return target;
}
size_t Pedigree::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.core.Pedigree)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
{
unsigned int count = static_cast(this->persons_size());
total_size += 1UL * count;
for (unsigned int i = 0; i < count; i++) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
this->persons(static_cast(i)));
}
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void Pedigree::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.core.Pedigree)
GOOGLE_DCHECK_NE(&from, this);
const Pedigree* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.core.Pedigree)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.core.Pedigree)
MergeFrom(*source);
}
}
void Pedigree::MergeFrom(const Pedigree& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.core.Pedigree)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
persons_.MergeFrom(from.persons_);
}
void Pedigree::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.core.Pedigree)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void Pedigree::CopyFrom(const Pedigree& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.core.Pedigree)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool Pedigree::IsInitialized() const {
return true;
}
void Pedigree::Swap(Pedigree* other) {
if (other == this) return;
InternalSwap(other);
}
void Pedigree::InternalSwap(Pedigree* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
CastToBase(&persons_)->InternalSwap(CastToBase(&other->persons_));
}
::PROTOBUF_NAMESPACE_ID::Metadata Pedigree::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse::HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse() {}
HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse::HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse(::PROTOBUF_NAMESPACE_ID::Arena* arena)
: SuperType(arena) {}
void HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse::MergeFrom(const HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse& other) {
MergeFromInternal(other);
}
::PROTOBUF_NAMESPACE_ID::Metadata HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse::GetMetadata() const {
return GetMetadataStatic();
}
void HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse::MergeFrom(
const ::PROTOBUF_NAMESPACE_ID::Message& other) {
::PROTOBUF_NAMESPACE_ID::Message::MergeFrom(other);
}
// ===================================================================
void HtsFile::InitAsDefaultInstance() {
}
class HtsFile::HasBitSetters {
public:
};
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int HtsFile::kUriFieldNumber;
const int HtsFile::kDescriptionFieldNumber;
const int HtsFile::kHtsFormatFieldNumber;
const int HtsFile::kGenomeAssemblyFieldNumber;
const int HtsFile::kIndividualToSampleIdentifiersFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
HtsFile::HtsFile()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.core.HtsFile)
}
HtsFile::HtsFile(const HtsFile& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
individual_to_sample_identifiers_.MergeFrom(from.individual_to_sample_identifiers_);
uri_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.uri().size() > 0) {
uri_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.uri_);
}
description_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.description().size() > 0) {
description_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.description_);
}
genome_assembly_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.genome_assembly().size() > 0) {
genome_assembly_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.genome_assembly_);
}
hts_format_ = from.hts_format_;
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.core.HtsFile)
}
void HtsFile::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_HtsFile_base_2eproto.base);
uri_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
description_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
genome_assembly_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
hts_format_ = 0;
}
HtsFile::~HtsFile() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.core.HtsFile)
SharedDtor();
}
void HtsFile::SharedDtor() {
uri_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
description_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
genome_assembly_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
void HtsFile::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const HtsFile& HtsFile::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_HtsFile_base_2eproto.base);
return *internal_default_instance();
}
void HtsFile::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.core.HtsFile)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
individual_to_sample_identifiers_.Clear();
uri_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
description_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
genome_assembly_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
hts_format_ = 0;
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* HtsFile::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// string uri = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_uri(), ptr, ctx, "org.phenopackets.schema.v1.core.HtsFile.uri");
CHK_(ptr);
} else goto handle_unusual;
continue;
// string description = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_description(), ptr, ctx, "org.phenopackets.schema.v1.core.HtsFile.description");
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.HtsFile.HtsFormat hts_format = 3;
case 3:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 24)) {
::PROTOBUF_NAMESPACE_ID::uint64 val = ::PROTOBUF_NAMESPACE_ID::internal::ReadVarint(&ptr);
CHK_(ptr);
set_hts_format(static_cast<::org::phenopackets::schema::v1::core::HtsFile_HtsFormat>(val));
} else goto handle_unusual;
continue;
// string genome_assembly = 4;
case 4:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 34)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_genome_assembly(), ptr, ctx, "org.phenopackets.schema.v1.core.HtsFile.genome_assembly");
CHK_(ptr);
} else goto handle_unusual;
continue;
// map individual_to_sample_identifiers = 5;
case 5:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 42)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(&individual_to_sample_identifiers_, ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 42);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool HtsFile::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.core.HtsFile)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// string uri = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_uri()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->uri().data(), static_cast(this->uri().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.core.HtsFile.uri"));
} else {
goto handle_unusual;
}
break;
}
// string description = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_description()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->description().data(), static_cast