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A Protobuf schema for capturing clinical phenotypes
// Generated by the protocol buffer compiler. DO NOT EDIT!
// source: base.proto
#ifndef GOOGLE_PROTOBUF_INCLUDED_base_2eproto
#define GOOGLE_PROTOBUF_INCLUDED_base_2eproto
#include
#include
#include
#if PROTOBUF_VERSION < 3008000
#error This file was generated by a newer version of protoc which is
#error incompatible with your Protocol Buffer headers. Please update
#error your headers.
#endif
#if 3008000 < PROTOBUF_MIN_PROTOC_VERSION
#error This file was generated by an older version of protoc which is
#error incompatible with your Protocol Buffer headers. Please
#error regenerate this file with a newer version of protoc.
#endif
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include
#include // IWYU pragma: export
#include // IWYU pragma: export
#include // IWYU pragma: export
#include
#include
#include
#include
#include
#include "validate/validate.pb.h"
// @@protoc_insertion_point(includes)
#include
#define PROTOBUF_INTERNAL_EXPORT_base_2eproto
PROTOBUF_NAMESPACE_OPEN
namespace internal {
class AnyMetadata;
} // namespace internal
PROTOBUF_NAMESPACE_CLOSE
// Internal implementation detail -- do not use these members.
struct TableStruct_base_2eproto {
static const ::PROTOBUF_NAMESPACE_ID::internal::ParseTableField entries[]
PROTOBUF_SECTION_VARIABLE(protodesc_cold);
static const ::PROTOBUF_NAMESPACE_ID::internal::AuxillaryParseTableField aux[]
PROTOBUF_SECTION_VARIABLE(protodesc_cold);
static const ::PROTOBUF_NAMESPACE_ID::internal::ParseTable schema[23]
PROTOBUF_SECTION_VARIABLE(protodesc_cold);
static const ::PROTOBUF_NAMESPACE_ID::internal::FieldMetadata field_metadata[];
static const ::PROTOBUF_NAMESPACE_ID::internal::SerializationTable serialization_table[];
static const ::PROTOBUF_NAMESPACE_ID::uint32 offsets[];
};
extern const ::PROTOBUF_NAMESPACE_ID::internal::DescriptorTable descriptor_table_base_2eproto;
namespace org {
namespace phenopackets {
namespace schema {
namespace v1 {
namespace core {
class Age;
class AgeDefaultTypeInternal;
extern AgeDefaultTypeInternal _Age_default_instance_;
class AgeRange;
class AgeRangeDefaultTypeInternal;
extern AgeRangeDefaultTypeInternal _AgeRange_default_instance_;
class Biosample;
class BiosampleDefaultTypeInternal;
extern BiosampleDefaultTypeInternal _Biosample_default_instance_;
class Disease;
class DiseaseDefaultTypeInternal;
extern DiseaseDefaultTypeInternal _Disease_default_instance_;
class Evidence;
class EvidenceDefaultTypeInternal;
extern EvidenceDefaultTypeInternal _Evidence_default_instance_;
class ExternalReference;
class ExternalReferenceDefaultTypeInternal;
extern ExternalReferenceDefaultTypeInternal _ExternalReference_default_instance_;
class Gene;
class GeneDefaultTypeInternal;
extern GeneDefaultTypeInternal _Gene_default_instance_;
class HgvsAllele;
class HgvsAlleleDefaultTypeInternal;
extern HgvsAlleleDefaultTypeInternal _HgvsAllele_default_instance_;
class HtsFile;
class HtsFileDefaultTypeInternal;
extern HtsFileDefaultTypeInternal _HtsFile_default_instance_;
class HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse;
class HtsFile_IndividualToSampleIdentifiersEntry_DoNotUseDefaultTypeInternal;
extern HtsFile_IndividualToSampleIdentifiersEntry_DoNotUseDefaultTypeInternal _HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse_default_instance_;
class Individual;
class IndividualDefaultTypeInternal;
extern IndividualDefaultTypeInternal _Individual_default_instance_;
class IscnAllele;
class IscnAlleleDefaultTypeInternal;
extern IscnAlleleDefaultTypeInternal _IscnAllele_default_instance_;
class MetaData;
class MetaDataDefaultTypeInternal;
extern MetaDataDefaultTypeInternal _MetaData_default_instance_;
class OntologyClass;
class OntologyClassDefaultTypeInternal;
extern OntologyClassDefaultTypeInternal _OntologyClass_default_instance_;
class Pedigree;
class PedigreeDefaultTypeInternal;
extern PedigreeDefaultTypeInternal _Pedigree_default_instance_;
class Pedigree_Person;
class Pedigree_PersonDefaultTypeInternal;
extern Pedigree_PersonDefaultTypeInternal _Pedigree_Person_default_instance_;
class PhenotypicFeature;
class PhenotypicFeatureDefaultTypeInternal;
extern PhenotypicFeatureDefaultTypeInternal _PhenotypicFeature_default_instance_;
class Procedure;
class ProcedureDefaultTypeInternal;
extern ProcedureDefaultTypeInternal _Procedure_default_instance_;
class Resource;
class ResourceDefaultTypeInternal;
extern ResourceDefaultTypeInternal _Resource_default_instance_;
class SpdiAllele;
class SpdiAlleleDefaultTypeInternal;
extern SpdiAlleleDefaultTypeInternal _SpdiAllele_default_instance_;
class Update;
class UpdateDefaultTypeInternal;
extern UpdateDefaultTypeInternal _Update_default_instance_;
class Variant;
class VariantDefaultTypeInternal;
extern VariantDefaultTypeInternal _Variant_default_instance_;
class VcfAllele;
class VcfAlleleDefaultTypeInternal;
extern VcfAlleleDefaultTypeInternal _VcfAllele_default_instance_;
} // namespace core
} // namespace v1
} // namespace schema
} // namespace phenopackets
} // namespace org
PROTOBUF_NAMESPACE_OPEN
template<> ::org::phenopackets::schema::v1::core::Age* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::Age>(Arena*);
template<> ::org::phenopackets::schema::v1::core::AgeRange* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::AgeRange>(Arena*);
template<> ::org::phenopackets::schema::v1::core::Biosample* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::Biosample>(Arena*);
template<> ::org::phenopackets::schema::v1::core::Disease* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::Disease>(Arena*);
template<> ::org::phenopackets::schema::v1::core::Evidence* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::Evidence>(Arena*);
template<> ::org::phenopackets::schema::v1::core::ExternalReference* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::ExternalReference>(Arena*);
template<> ::org::phenopackets::schema::v1::core::Gene* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::Gene>(Arena*);
template<> ::org::phenopackets::schema::v1::core::HgvsAllele* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::HgvsAllele>(Arena*);
template<> ::org::phenopackets::schema::v1::core::HtsFile* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::HtsFile>(Arena*);
template<> ::org::phenopackets::schema::v1::core::HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse>(Arena*);
template<> ::org::phenopackets::schema::v1::core::Individual* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::Individual>(Arena*);
template<> ::org::phenopackets::schema::v1::core::IscnAllele* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::IscnAllele>(Arena*);
template<> ::org::phenopackets::schema::v1::core::MetaData* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::MetaData>(Arena*);
template<> ::org::phenopackets::schema::v1::core::OntologyClass* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(Arena*);
template<> ::org::phenopackets::schema::v1::core::Pedigree* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::Pedigree>(Arena*);
template<> ::org::phenopackets::schema::v1::core::Pedigree_Person* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::Pedigree_Person>(Arena*);
template<> ::org::phenopackets::schema::v1::core::PhenotypicFeature* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::PhenotypicFeature>(Arena*);
template<> ::org::phenopackets::schema::v1::core::Procedure* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::Procedure>(Arena*);
template<> ::org::phenopackets::schema::v1::core::Resource* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::Resource>(Arena*);
template<> ::org::phenopackets::schema::v1::core::SpdiAllele* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::SpdiAllele>(Arena*);
template<> ::org::phenopackets::schema::v1::core::Update* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::Update>(Arena*);
template<> ::org::phenopackets::schema::v1::core::Variant* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::Variant>(Arena*);
template<> ::org::phenopackets::schema::v1::core::VcfAllele* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::core::VcfAllele>(Arena*);
PROTOBUF_NAMESPACE_CLOSE
namespace org {
namespace phenopackets {
namespace schema {
namespace v1 {
namespace core {
enum Pedigree_Person_AffectedStatus : int {
Pedigree_Person_AffectedStatus_MISSING = 0,
Pedigree_Person_AffectedStatus_UNAFFECTED = 1,
Pedigree_Person_AffectedStatus_AFFECTED = 2,
Pedigree_Person_AffectedStatus_Pedigree_Person_AffectedStatus_INT_MIN_SENTINEL_DO_NOT_USE_ = std::numeric_limits<::PROTOBUF_NAMESPACE_ID::int32>::min(),
Pedigree_Person_AffectedStatus_Pedigree_Person_AffectedStatus_INT_MAX_SENTINEL_DO_NOT_USE_ = std::numeric_limits<::PROTOBUF_NAMESPACE_ID::int32>::max()
};
bool Pedigree_Person_AffectedStatus_IsValid(int value);
constexpr Pedigree_Person_AffectedStatus Pedigree_Person_AffectedStatus_AffectedStatus_MIN = Pedigree_Person_AffectedStatus_MISSING;
constexpr Pedigree_Person_AffectedStatus Pedigree_Person_AffectedStatus_AffectedStatus_MAX = Pedigree_Person_AffectedStatus_AFFECTED;
constexpr int Pedigree_Person_AffectedStatus_AffectedStatus_ARRAYSIZE = Pedigree_Person_AffectedStatus_AffectedStatus_MAX + 1;
const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor* Pedigree_Person_AffectedStatus_descriptor();
template
inline const std::string& Pedigree_Person_AffectedStatus_Name(T enum_t_value) {
static_assert(::std::is_same::value ||
::std::is_integral::value,
"Incorrect type passed to function Pedigree_Person_AffectedStatus_Name.");
return ::PROTOBUF_NAMESPACE_ID::internal::NameOfEnum(
Pedigree_Person_AffectedStatus_descriptor(), enum_t_value);
}
inline bool Pedigree_Person_AffectedStatus_Parse(
const std::string& name, Pedigree_Person_AffectedStatus* value) {
return ::PROTOBUF_NAMESPACE_ID::internal::ParseNamedEnum(
Pedigree_Person_AffectedStatus_descriptor(), name, value);
}
enum HtsFile_HtsFormat : int {
HtsFile_HtsFormat_UNKNOWN = 0,
HtsFile_HtsFormat_SAM = 1,
HtsFile_HtsFormat_BAM = 2,
HtsFile_HtsFormat_CRAM = 3,
HtsFile_HtsFormat_VCF = 4,
HtsFile_HtsFormat_BCF = 5,
HtsFile_HtsFormat_GVCF = 6,
HtsFile_HtsFormat_HtsFile_HtsFormat_INT_MIN_SENTINEL_DO_NOT_USE_ = std::numeric_limits<::PROTOBUF_NAMESPACE_ID::int32>::min(),
HtsFile_HtsFormat_HtsFile_HtsFormat_INT_MAX_SENTINEL_DO_NOT_USE_ = std::numeric_limits<::PROTOBUF_NAMESPACE_ID::int32>::max()
};
bool HtsFile_HtsFormat_IsValid(int value);
constexpr HtsFile_HtsFormat HtsFile_HtsFormat_HtsFormat_MIN = HtsFile_HtsFormat_UNKNOWN;
constexpr HtsFile_HtsFormat HtsFile_HtsFormat_HtsFormat_MAX = HtsFile_HtsFormat_GVCF;
constexpr int HtsFile_HtsFormat_HtsFormat_ARRAYSIZE = HtsFile_HtsFormat_HtsFormat_MAX + 1;
const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor* HtsFile_HtsFormat_descriptor();
template
inline const std::string& HtsFile_HtsFormat_Name(T enum_t_value) {
static_assert(::std::is_same::value ||
::std::is_integral::value,
"Incorrect type passed to function HtsFile_HtsFormat_Name.");
return ::PROTOBUF_NAMESPACE_ID::internal::NameOfEnum(
HtsFile_HtsFormat_descriptor(), enum_t_value);
}
inline bool HtsFile_HtsFormat_Parse(
const std::string& name, HtsFile_HtsFormat* value) {
return ::PROTOBUF_NAMESPACE_ID::internal::ParseNamedEnum(
HtsFile_HtsFormat_descriptor(), name, value);
}
enum Sex : int {
UNKNOWN_SEX = 0,
FEMALE = 1,
MALE = 2,
OTHER_SEX = 3,
Sex_INT_MIN_SENTINEL_DO_NOT_USE_ = std::numeric_limits<::PROTOBUF_NAMESPACE_ID::int32>::min(),
Sex_INT_MAX_SENTINEL_DO_NOT_USE_ = std::numeric_limits<::PROTOBUF_NAMESPACE_ID::int32>::max()
};
bool Sex_IsValid(int value);
constexpr Sex Sex_MIN = UNKNOWN_SEX;
constexpr Sex Sex_MAX = OTHER_SEX;
constexpr int Sex_ARRAYSIZE = Sex_MAX + 1;
const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor* Sex_descriptor();
template
inline const std::string& Sex_Name(T enum_t_value) {
static_assert(::std::is_same::value ||
::std::is_integral::value,
"Incorrect type passed to function Sex_Name.");
return ::PROTOBUF_NAMESPACE_ID::internal::NameOfEnum(
Sex_descriptor(), enum_t_value);
}
inline bool Sex_Parse(
const std::string& name, Sex* value) {
return ::PROTOBUF_NAMESPACE_ID::internal::ParseNamedEnum(
Sex_descriptor(), name, value);
}
enum KaryotypicSex : int {
UNKNOWN_KARYOTYPE = 0,
XX = 1,
XY = 2,
XO = 3,
XXY = 4,
XXX = 5,
XXYY = 6,
XXXY = 7,
XXXX = 8,
XYY = 9,
OTHER_KARYOTYPE = 10,
KaryotypicSex_INT_MIN_SENTINEL_DO_NOT_USE_ = std::numeric_limits<::PROTOBUF_NAMESPACE_ID::int32>::min(),
KaryotypicSex_INT_MAX_SENTINEL_DO_NOT_USE_ = std::numeric_limits<::PROTOBUF_NAMESPACE_ID::int32>::max()
};
bool KaryotypicSex_IsValid(int value);
constexpr KaryotypicSex KaryotypicSex_MIN = UNKNOWN_KARYOTYPE;
constexpr KaryotypicSex KaryotypicSex_MAX = OTHER_KARYOTYPE;
constexpr int KaryotypicSex_ARRAYSIZE = KaryotypicSex_MAX + 1;
const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor* KaryotypicSex_descriptor();
template
inline const std::string& KaryotypicSex_Name(T enum_t_value) {
static_assert(::std::is_same::value ||
::std::is_integral::value,
"Incorrect type passed to function KaryotypicSex_Name.");
return ::PROTOBUF_NAMESPACE_ID::internal::NameOfEnum(
KaryotypicSex_descriptor(), enum_t_value);
}
inline bool KaryotypicSex_Parse(
const std::string& name, KaryotypicSex* value) {
return ::PROTOBUF_NAMESPACE_ID::internal::ParseNamedEnum(
KaryotypicSex_descriptor(), name, value);
}
// ===================================================================
class MetaData :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.MetaData) */ {
public:
MetaData();
virtual ~MetaData();
MetaData(const MetaData& from);
MetaData(MetaData&& from) noexcept
: MetaData() {
*this = ::std::move(from);
}
inline MetaData& operator=(const MetaData& from) {
CopyFrom(from);
return *this;
}
inline MetaData& operator=(MetaData&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const MetaData& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const MetaData* internal_default_instance() {
return reinterpret_cast(
&_MetaData_default_instance_);
}
static constexpr int kIndexInFileMessages =
0;
void Swap(MetaData* other);
friend void swap(MetaData& a, MetaData& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline MetaData* New() const final {
return CreateMaybeMessage(nullptr);
}
MetaData* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const MetaData& from);
void MergeFrom(const MetaData& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(MetaData* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.MetaData";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// repeated .org.phenopackets.schema.v1.core.Resource resources = 4;
int resources_size() const;
void clear_resources();
static const int kResourcesFieldNumber = 4;
::org::phenopackets::schema::v1::core::Resource* mutable_resources(int index);
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Resource >*
mutable_resources();
const ::org::phenopackets::schema::v1::core::Resource& resources(int index) const;
::org::phenopackets::schema::v1::core::Resource* add_resources();
const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Resource >&
resources() const;
// repeated .org.phenopackets.schema.v1.core.Update updates = 5;
int updates_size() const;
void clear_updates();
static const int kUpdatesFieldNumber = 5;
::org::phenopackets::schema::v1::core::Update* mutable_updates(int index);
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Update >*
mutable_updates();
const ::org::phenopackets::schema::v1::core::Update& updates(int index) const;
::org::phenopackets::schema::v1::core::Update* add_updates();
const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Update >&
updates() const;
// repeated .org.phenopackets.schema.v1.core.ExternalReference external_references = 7;
int external_references_size() const;
void clear_external_references();
static const int kExternalReferencesFieldNumber = 7;
::org::phenopackets::schema::v1::core::ExternalReference* mutable_external_references(int index);
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::ExternalReference >*
mutable_external_references();
const ::org::phenopackets::schema::v1::core::ExternalReference& external_references(int index) const;
::org::phenopackets::schema::v1::core::ExternalReference* add_external_references();
const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::ExternalReference >&
external_references() const;
// string created_by = 2;
void clear_created_by();
static const int kCreatedByFieldNumber = 2;
const std::string& created_by() const;
void set_created_by(const std::string& value);
void set_created_by(std::string&& value);
void set_created_by(const char* value);
void set_created_by(const char* value, size_t size);
std::string* mutable_created_by();
std::string* release_created_by();
void set_allocated_created_by(std::string* created_by);
// string submitted_by = 3;
void clear_submitted_by();
static const int kSubmittedByFieldNumber = 3;
const std::string& submitted_by() const;
void set_submitted_by(const std::string& value);
void set_submitted_by(std::string&& value);
void set_submitted_by(const char* value);
void set_submitted_by(const char* value, size_t size);
std::string* mutable_submitted_by();
std::string* release_submitted_by();
void set_allocated_submitted_by(std::string* submitted_by);
// string phenopacket_schema_version = 6;
void clear_phenopacket_schema_version();
static const int kPhenopacketSchemaVersionFieldNumber = 6;
const std::string& phenopacket_schema_version() const;
void set_phenopacket_schema_version(const std::string& value);
void set_phenopacket_schema_version(std::string&& value);
void set_phenopacket_schema_version(const char* value);
void set_phenopacket_schema_version(const char* value, size_t size);
std::string* mutable_phenopacket_schema_version();
std::string* release_phenopacket_schema_version();
void set_allocated_phenopacket_schema_version(std::string* phenopacket_schema_version);
// .google.protobuf.Timestamp created = 1;
bool has_created() const;
void clear_created();
static const int kCreatedFieldNumber = 1;
const PROTOBUF_NAMESPACE_ID::Timestamp& created() const;
PROTOBUF_NAMESPACE_ID::Timestamp* release_created();
PROTOBUF_NAMESPACE_ID::Timestamp* mutable_created();
void set_allocated_created(PROTOBUF_NAMESPACE_ID::Timestamp* created);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.MetaData)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Resource > resources_;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Update > updates_;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::ExternalReference > external_references_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr created_by_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr submitted_by_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr phenopacket_schema_version_;
PROTOBUF_NAMESPACE_ID::Timestamp* created_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class Update :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.Update) */ {
public:
Update();
virtual ~Update();
Update(const Update& from);
Update(Update&& from) noexcept
: Update() {
*this = ::std::move(from);
}
inline Update& operator=(const Update& from) {
CopyFrom(from);
return *this;
}
inline Update& operator=(Update&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const Update& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const Update* internal_default_instance() {
return reinterpret_cast(
&_Update_default_instance_);
}
static constexpr int kIndexInFileMessages =
1;
void Swap(Update* other);
friend void swap(Update& a, Update& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline Update* New() const final {
return CreateMaybeMessage(nullptr);
}
Update* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const Update& from);
void MergeFrom(const Update& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(Update* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.Update";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// string updated_by = 2;
void clear_updated_by();
static const int kUpdatedByFieldNumber = 2;
const std::string& updated_by() const;
void set_updated_by(const std::string& value);
void set_updated_by(std::string&& value);
void set_updated_by(const char* value);
void set_updated_by(const char* value, size_t size);
std::string* mutable_updated_by();
std::string* release_updated_by();
void set_allocated_updated_by(std::string* updated_by);
// string comment = 3;
void clear_comment();
static const int kCommentFieldNumber = 3;
const std::string& comment() const;
void set_comment(const std::string& value);
void set_comment(std::string&& value);
void set_comment(const char* value);
void set_comment(const char* value, size_t size);
std::string* mutable_comment();
std::string* release_comment();
void set_allocated_comment(std::string* comment);
// .google.protobuf.Timestamp timestamp = 1 [(.validate.rules) = {
bool has_timestamp() const;
void clear_timestamp();
static const int kTimestampFieldNumber = 1;
const PROTOBUF_NAMESPACE_ID::Timestamp& timestamp() const;
PROTOBUF_NAMESPACE_ID::Timestamp* release_timestamp();
PROTOBUF_NAMESPACE_ID::Timestamp* mutable_timestamp();
void set_allocated_timestamp(PROTOBUF_NAMESPACE_ID::Timestamp* timestamp);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Update)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr updated_by_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr comment_;
PROTOBUF_NAMESPACE_ID::Timestamp* timestamp_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class Resource :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.Resource) */ {
public:
Resource();
virtual ~Resource();
Resource(const Resource& from);
Resource(Resource&& from) noexcept
: Resource() {
*this = ::std::move(from);
}
inline Resource& operator=(const Resource& from) {
CopyFrom(from);
return *this;
}
inline Resource& operator=(Resource&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const Resource& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const Resource* internal_default_instance() {
return reinterpret_cast(
&_Resource_default_instance_);
}
static constexpr int kIndexInFileMessages =
2;
void Swap(Resource* other);
friend void swap(Resource& a, Resource& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline Resource* New() const final {
return CreateMaybeMessage(nullptr);
}
Resource* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const Resource& from);
void MergeFrom(const Resource& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(Resource* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.Resource";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// string id = 1;
void clear_id();
static const int kIdFieldNumber = 1;
const std::string& id() const;
void set_id(const std::string& value);
void set_id(std::string&& value);
void set_id(const char* value);
void set_id(const char* value, size_t size);
std::string* mutable_id();
std::string* release_id();
void set_allocated_id(std::string* id);
// string name = 2;
void clear_name();
static const int kNameFieldNumber = 2;
const std::string& name() const;
void set_name(const std::string& value);
void set_name(std::string&& value);
void set_name(const char* value);
void set_name(const char* value, size_t size);
std::string* mutable_name();
std::string* release_name();
void set_allocated_name(std::string* name);
// string url = 3;
void clear_url();
static const int kUrlFieldNumber = 3;
const std::string& url() const;
void set_url(const std::string& value);
void set_url(std::string&& value);
void set_url(const char* value);
void set_url(const char* value, size_t size);
std::string* mutable_url();
std::string* release_url();
void set_allocated_url(std::string* url);
// string version = 4;
void clear_version();
static const int kVersionFieldNumber = 4;
const std::string& version() const;
void set_version(const std::string& value);
void set_version(std::string&& value);
void set_version(const char* value);
void set_version(const char* value, size_t size);
std::string* mutable_version();
std::string* release_version();
void set_allocated_version(std::string* version);
// string namespace_prefix = 5;
void clear_namespace_prefix();
static const int kNamespacePrefixFieldNumber = 5;
const std::string& namespace_prefix() const;
void set_namespace_prefix(const std::string& value);
void set_namespace_prefix(std::string&& value);
void set_namespace_prefix(const char* value);
void set_namespace_prefix(const char* value, size_t size);
std::string* mutable_namespace_prefix();
std::string* release_namespace_prefix();
void set_allocated_namespace_prefix(std::string* namespace_prefix);
// string iri_prefix = 6;
void clear_iri_prefix();
static const int kIriPrefixFieldNumber = 6;
const std::string& iri_prefix() const;
void set_iri_prefix(const std::string& value);
void set_iri_prefix(std::string&& value);
void set_iri_prefix(const char* value);
void set_iri_prefix(const char* value, size_t size);
std::string* mutable_iri_prefix();
std::string* release_iri_prefix();
void set_allocated_iri_prefix(std::string* iri_prefix);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Resource)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr name_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr url_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr version_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr namespace_prefix_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr iri_prefix_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class OntologyClass :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.OntologyClass) */ {
public:
OntologyClass();
virtual ~OntologyClass();
OntologyClass(const OntologyClass& from);
OntologyClass(OntologyClass&& from) noexcept
: OntologyClass() {
*this = ::std::move(from);
}
inline OntologyClass& operator=(const OntologyClass& from) {
CopyFrom(from);
return *this;
}
inline OntologyClass& operator=(OntologyClass&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const OntologyClass& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const OntologyClass* internal_default_instance() {
return reinterpret_cast(
&_OntologyClass_default_instance_);
}
static constexpr int kIndexInFileMessages =
3;
void Swap(OntologyClass* other);
friend void swap(OntologyClass& a, OntologyClass& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline OntologyClass* New() const final {
return CreateMaybeMessage(nullptr);
}
OntologyClass* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const OntologyClass& from);
void MergeFrom(const OntologyClass& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(OntologyClass* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.OntologyClass";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// string id = 1;
void clear_id();
static const int kIdFieldNumber = 1;
const std::string& id() const;
void set_id(const std::string& value);
void set_id(std::string&& value);
void set_id(const char* value);
void set_id(const char* value, size_t size);
std::string* mutable_id();
std::string* release_id();
void set_allocated_id(std::string* id);
// string label = 2;
void clear_label();
static const int kLabelFieldNumber = 2;
const std::string& label() const;
void set_label(const std::string& value);
void set_label(std::string&& value);
void set_label(const char* value);
void set_label(const char* value, size_t size);
std::string* mutable_label();
std::string* release_label();
void set_allocated_label(std::string* label);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.OntologyClass)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr label_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class PhenotypicFeature :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.PhenotypicFeature) */ {
public:
PhenotypicFeature();
virtual ~PhenotypicFeature();
PhenotypicFeature(const PhenotypicFeature& from);
PhenotypicFeature(PhenotypicFeature&& from) noexcept
: PhenotypicFeature() {
*this = ::std::move(from);
}
inline PhenotypicFeature& operator=(const PhenotypicFeature& from) {
CopyFrom(from);
return *this;
}
inline PhenotypicFeature& operator=(PhenotypicFeature&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const PhenotypicFeature& default_instance();
enum OnsetCase {
kAgeOfOnset = 6,
kAgeRangeOfOnset = 7,
kClassOfOnset = 9,
ONSET_NOT_SET = 0,
};
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const PhenotypicFeature* internal_default_instance() {
return reinterpret_cast(
&_PhenotypicFeature_default_instance_);
}
static constexpr int kIndexInFileMessages =
4;
void Swap(PhenotypicFeature* other);
friend void swap(PhenotypicFeature& a, PhenotypicFeature& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline PhenotypicFeature* New() const final {
return CreateMaybeMessage(nullptr);
}
PhenotypicFeature* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const PhenotypicFeature& from);
void MergeFrom(const PhenotypicFeature& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(PhenotypicFeature* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.PhenotypicFeature";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// repeated .org.phenopackets.schema.v1.core.OntologyClass modifiers = 5;
int modifiers_size() const;
void clear_modifiers();
static const int kModifiersFieldNumber = 5;
::org::phenopackets::schema::v1::core::OntologyClass* mutable_modifiers(int index);
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass >*
mutable_modifiers();
const ::org::phenopackets::schema::v1::core::OntologyClass& modifiers(int index) const;
::org::phenopackets::schema::v1::core::OntologyClass* add_modifiers();
const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass >&
modifiers() const;
// repeated .org.phenopackets.schema.v1.core.Evidence evidence = 10;
int evidence_size() const;
void clear_evidence();
static const int kEvidenceFieldNumber = 10;
::org::phenopackets::schema::v1::core::Evidence* mutable_evidence(int index);
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Evidence >*
mutable_evidence();
const ::org::phenopackets::schema::v1::core::Evidence& evidence(int index) const;
::org::phenopackets::schema::v1::core::Evidence* add_evidence();
const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Evidence >&
evidence() const;
// string description = 1;
void clear_description();
static const int kDescriptionFieldNumber = 1;
const std::string& description() const;
void set_description(const std::string& value);
void set_description(std::string&& value);
void set_description(const char* value);
void set_description(const char* value, size_t size);
std::string* mutable_description();
std::string* release_description();
void set_allocated_description(std::string* description);
// .org.phenopackets.schema.v1.core.OntologyClass type = 2;
bool has_type() const;
void clear_type();
static const int kTypeFieldNumber = 2;
const ::org::phenopackets::schema::v1::core::OntologyClass& type() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_type();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_type();
void set_allocated_type(::org::phenopackets::schema::v1::core::OntologyClass* type);
// .org.phenopackets.schema.v1.core.OntologyClass severity = 4;
bool has_severity() const;
void clear_severity();
static const int kSeverityFieldNumber = 4;
const ::org::phenopackets::schema::v1::core::OntologyClass& severity() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_severity();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_severity();
void set_allocated_severity(::org::phenopackets::schema::v1::core::OntologyClass* severity);
// bool negated = 3;
void clear_negated();
static const int kNegatedFieldNumber = 3;
bool negated() const;
void set_negated(bool value);
// .org.phenopackets.schema.v1.core.Age age_of_onset = 6;
bool has_age_of_onset() const;
void clear_age_of_onset();
static const int kAgeOfOnsetFieldNumber = 6;
const ::org::phenopackets::schema::v1::core::Age& age_of_onset() const;
::org::phenopackets::schema::v1::core::Age* release_age_of_onset();
::org::phenopackets::schema::v1::core::Age* mutable_age_of_onset();
void set_allocated_age_of_onset(::org::phenopackets::schema::v1::core::Age* age_of_onset);
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 7;
bool has_age_range_of_onset() const;
void clear_age_range_of_onset();
static const int kAgeRangeOfOnsetFieldNumber = 7;
const ::org::phenopackets::schema::v1::core::AgeRange& age_range_of_onset() const;
::org::phenopackets::schema::v1::core::AgeRange* release_age_range_of_onset();
::org::phenopackets::schema::v1::core::AgeRange* mutable_age_range_of_onset();
void set_allocated_age_range_of_onset(::org::phenopackets::schema::v1::core::AgeRange* age_range_of_onset);
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 9;
bool has_class_of_onset() const;
void clear_class_of_onset();
static const int kClassOfOnsetFieldNumber = 9;
const ::org::phenopackets::schema::v1::core::OntologyClass& class_of_onset() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_class_of_onset();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_class_of_onset();
void set_allocated_class_of_onset(::org::phenopackets::schema::v1::core::OntologyClass* class_of_onset);
void clear_onset();
OnsetCase onset_case() const;
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.PhenotypicFeature)
private:
class HasBitSetters;
void set_has_age_of_onset();
void set_has_age_range_of_onset();
void set_has_class_of_onset();
inline bool has_onset() const;
inline void clear_has_onset();
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass > modifiers_;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Evidence > evidence_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr description_;
::org::phenopackets::schema::v1::core::OntologyClass* type_;
::org::phenopackets::schema::v1::core::OntologyClass* severity_;
bool negated_;
union OnsetUnion {
OnsetUnion() {}
::org::phenopackets::schema::v1::core::Age* age_of_onset_;
::org::phenopackets::schema::v1::core::AgeRange* age_range_of_onset_;
::org::phenopackets::schema::v1::core::OntologyClass* class_of_onset_;
} onset_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
::PROTOBUF_NAMESPACE_ID::uint32 _oneof_case_[1];
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class Evidence :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.Evidence) */ {
public:
Evidence();
virtual ~Evidence();
Evidence(const Evidence& from);
Evidence(Evidence&& from) noexcept
: Evidence() {
*this = ::std::move(from);
}
inline Evidence& operator=(const Evidence& from) {
CopyFrom(from);
return *this;
}
inline Evidence& operator=(Evidence&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const Evidence& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const Evidence* internal_default_instance() {
return reinterpret_cast(
&_Evidence_default_instance_);
}
static constexpr int kIndexInFileMessages =
5;
void Swap(Evidence* other);
friend void swap(Evidence& a, Evidence& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline Evidence* New() const final {
return CreateMaybeMessage(nullptr);
}
Evidence* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const Evidence& from);
void MergeFrom(const Evidence& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(Evidence* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.Evidence";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// .org.phenopackets.schema.v1.core.OntologyClass evidence_code = 1;
bool has_evidence_code() const;
void clear_evidence_code();
static const int kEvidenceCodeFieldNumber = 1;
const ::org::phenopackets::schema::v1::core::OntologyClass& evidence_code() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_evidence_code();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_evidence_code();
void set_allocated_evidence_code(::org::phenopackets::schema::v1::core::OntologyClass* evidence_code);
// .org.phenopackets.schema.v1.core.ExternalReference reference = 2;
bool has_reference() const;
void clear_reference();
static const int kReferenceFieldNumber = 2;
const ::org::phenopackets::schema::v1::core::ExternalReference& reference() const;
::org::phenopackets::schema::v1::core::ExternalReference* release_reference();
::org::phenopackets::schema::v1::core::ExternalReference* mutable_reference();
void set_allocated_reference(::org::phenopackets::schema::v1::core::ExternalReference* reference);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Evidence)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::org::phenopackets::schema::v1::core::OntologyClass* evidence_code_;
::org::phenopackets::schema::v1::core::ExternalReference* reference_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class ExternalReference :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.ExternalReference) */ {
public:
ExternalReference();
virtual ~ExternalReference();
ExternalReference(const ExternalReference& from);
ExternalReference(ExternalReference&& from) noexcept
: ExternalReference() {
*this = ::std::move(from);
}
inline ExternalReference& operator=(const ExternalReference& from) {
CopyFrom(from);
return *this;
}
inline ExternalReference& operator=(ExternalReference&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const ExternalReference& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const ExternalReference* internal_default_instance() {
return reinterpret_cast(
&_ExternalReference_default_instance_);
}
static constexpr int kIndexInFileMessages =
6;
void Swap(ExternalReference* other);
friend void swap(ExternalReference& a, ExternalReference& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline ExternalReference* New() const final {
return CreateMaybeMessage(nullptr);
}
ExternalReference* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const ExternalReference& from);
void MergeFrom(const ExternalReference& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(ExternalReference* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.ExternalReference";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// string id = 1;
void clear_id();
static const int kIdFieldNumber = 1;
const std::string& id() const;
void set_id(const std::string& value);
void set_id(std::string&& value);
void set_id(const char* value);
void set_id(const char* value, size_t size);
std::string* mutable_id();
std::string* release_id();
void set_allocated_id(std::string* id);
// string description = 2;
void clear_description();
static const int kDescriptionFieldNumber = 2;
const std::string& description() const;
void set_description(const std::string& value);
void set_description(std::string&& value);
void set_description(const char* value);
void set_description(const char* value, size_t size);
std::string* mutable_description();
std::string* release_description();
void set_allocated_description(std::string* description);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.ExternalReference)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr description_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class Individual :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.Individual) */ {
public:
Individual();
virtual ~Individual();
Individual(const Individual& from);
Individual(Individual&& from) noexcept
: Individual() {
*this = ::std::move(from);
}
inline Individual& operator=(const Individual& from) {
CopyFrom(from);
return *this;
}
inline Individual& operator=(Individual&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const Individual& default_instance();
enum AgeCase {
kAgeAtCollection = 4,
kAgeRangeAtCollection = 5,
AGE_NOT_SET = 0,
};
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const Individual* internal_default_instance() {
return reinterpret_cast(
&_Individual_default_instance_);
}
static constexpr int kIndexInFileMessages =
7;
void Swap(Individual* other);
friend void swap(Individual& a, Individual& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline Individual* New() const final {
return CreateMaybeMessage(nullptr);
}
Individual* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const Individual& from);
void MergeFrom(const Individual& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(Individual* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.Individual";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// repeated string alternate_ids = 2;
int alternate_ids_size() const;
void clear_alternate_ids();
static const int kAlternateIdsFieldNumber = 2;
const std::string& alternate_ids(int index) const;
std::string* mutable_alternate_ids(int index);
void set_alternate_ids(int index, const std::string& value);
void set_alternate_ids(int index, std::string&& value);
void set_alternate_ids(int index, const char* value);
void set_alternate_ids(int index, const char* value, size_t size);
std::string* add_alternate_ids();
void add_alternate_ids(const std::string& value);
void add_alternate_ids(std::string&& value);
void add_alternate_ids(const char* value);
void add_alternate_ids(const char* value, size_t size);
const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField& alternate_ids() const;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField* mutable_alternate_ids();
// string id = 1;
void clear_id();
static const int kIdFieldNumber = 1;
const std::string& id() const;
void set_id(const std::string& value);
void set_id(std::string&& value);
void set_id(const char* value);
void set_id(const char* value, size_t size);
std::string* mutable_id();
std::string* release_id();
void set_allocated_id(std::string* id);
// .google.protobuf.Timestamp date_of_birth = 3;
bool has_date_of_birth() const;
void clear_date_of_birth();
static const int kDateOfBirthFieldNumber = 3;
const PROTOBUF_NAMESPACE_ID::Timestamp& date_of_birth() const;
PROTOBUF_NAMESPACE_ID::Timestamp* release_date_of_birth();
PROTOBUF_NAMESPACE_ID::Timestamp* mutable_date_of_birth();
void set_allocated_date_of_birth(PROTOBUF_NAMESPACE_ID::Timestamp* date_of_birth);
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 8;
bool has_taxonomy() const;
void clear_taxonomy();
static const int kTaxonomyFieldNumber = 8;
const ::org::phenopackets::schema::v1::core::OntologyClass& taxonomy() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_taxonomy();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_taxonomy();
void set_allocated_taxonomy(::org::phenopackets::schema::v1::core::OntologyClass* taxonomy);
// .org.phenopackets.schema.v1.core.Sex sex = 6;
void clear_sex();
static const int kSexFieldNumber = 6;
::org::phenopackets::schema::v1::core::Sex sex() const;
void set_sex(::org::phenopackets::schema::v1::core::Sex value);
// .org.phenopackets.schema.v1.core.KaryotypicSex karyotypic_sex = 7;
void clear_karyotypic_sex();
static const int kKaryotypicSexFieldNumber = 7;
::org::phenopackets::schema::v1::core::KaryotypicSex karyotypic_sex() const;
void set_karyotypic_sex(::org::phenopackets::schema::v1::core::KaryotypicSex value);
// .org.phenopackets.schema.v1.core.Age age_at_collection = 4;
bool has_age_at_collection() const;
void clear_age_at_collection();
static const int kAgeAtCollectionFieldNumber = 4;
const ::org::phenopackets::schema::v1::core::Age& age_at_collection() const;
::org::phenopackets::schema::v1::core::Age* release_age_at_collection();
::org::phenopackets::schema::v1::core::Age* mutable_age_at_collection();
void set_allocated_age_at_collection(::org::phenopackets::schema::v1::core::Age* age_at_collection);
// .org.phenopackets.schema.v1.core.AgeRange age_range_at_collection = 5;
bool has_age_range_at_collection() const;
void clear_age_range_at_collection();
static const int kAgeRangeAtCollectionFieldNumber = 5;
const ::org::phenopackets::schema::v1::core::AgeRange& age_range_at_collection() const;
::org::phenopackets::schema::v1::core::AgeRange* release_age_range_at_collection();
::org::phenopackets::schema::v1::core::AgeRange* mutable_age_range_at_collection();
void set_allocated_age_range_at_collection(::org::phenopackets::schema::v1::core::AgeRange* age_range_at_collection);
void clear_age();
AgeCase age_case() const;
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Individual)
private:
class HasBitSetters;
void set_has_age_at_collection();
void set_has_age_range_at_collection();
inline bool has_age() const;
inline void clear_has_age();
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField alternate_ids_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr id_;
PROTOBUF_NAMESPACE_ID::Timestamp* date_of_birth_;
::org::phenopackets::schema::v1::core::OntologyClass* taxonomy_;
int sex_;
int karyotypic_sex_;
union AgeUnion {
AgeUnion() {}
::org::phenopackets::schema::v1::core::Age* age_at_collection_;
::org::phenopackets::schema::v1::core::AgeRange* age_range_at_collection_;
} age_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
::PROTOBUF_NAMESPACE_ID::uint32 _oneof_case_[1];
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class Biosample :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.Biosample) */ {
public:
Biosample();
virtual ~Biosample();
Biosample(const Biosample& from);
Biosample(Biosample&& from) noexcept
: Biosample() {
*this = ::std::move(from);
}
inline Biosample& operator=(const Biosample& from) {
CopyFrom(from);
return *this;
}
inline Biosample& operator=(Biosample&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const Biosample& default_instance();
enum IndividualAgeAtCollectionCase {
kAgeOfIndividualAtCollection = 7,
kAgeRangeOfIndividualAtCollection = 8,
INDIVIDUAL_AGE_AT_COLLECTION_NOT_SET = 0,
};
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const Biosample* internal_default_instance() {
return reinterpret_cast(
&_Biosample_default_instance_);
}
static constexpr int kIndexInFileMessages =
8;
void Swap(Biosample* other);
friend void swap(Biosample& a, Biosample& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline Biosample* New() const final {
return CreateMaybeMessage(nullptr);
}
Biosample* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const Biosample& from);
void MergeFrom(const Biosample& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(Biosample* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.Biosample";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// repeated .org.phenopackets.schema.v1.core.PhenotypicFeature phenotypic_features = 5;
int phenotypic_features_size() const;
void clear_phenotypic_features();
static const int kPhenotypicFeaturesFieldNumber = 5;
::org::phenopackets::schema::v1::core::PhenotypicFeature* mutable_phenotypic_features(int index);
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::PhenotypicFeature >*
mutable_phenotypic_features();
const ::org::phenopackets::schema::v1::core::PhenotypicFeature& phenotypic_features(int index) const;
::org::phenopackets::schema::v1::core::PhenotypicFeature* add_phenotypic_features();
const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::PhenotypicFeature >&
phenotypic_features() const;
// repeated .org.phenopackets.schema.v1.core.OntologyClass diagnostic_markers = 12;
int diagnostic_markers_size() const;
void clear_diagnostic_markers();
static const int kDiagnosticMarkersFieldNumber = 12;
::org::phenopackets::schema::v1::core::OntologyClass* mutable_diagnostic_markers(int index);
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass >*
mutable_diagnostic_markers();
const ::org::phenopackets::schema::v1::core::OntologyClass& diagnostic_markers(int index) const;
::org::phenopackets::schema::v1::core::OntologyClass* add_diagnostic_markers();
const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass >&
diagnostic_markers() const;
// repeated .org.phenopackets.schema.v1.core.HtsFile hts_files = 14;
int hts_files_size() const;
void clear_hts_files();
static const int kHtsFilesFieldNumber = 14;
::org::phenopackets::schema::v1::core::HtsFile* mutable_hts_files(int index);
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >*
mutable_hts_files();
const ::org::phenopackets::schema::v1::core::HtsFile& hts_files(int index) const;
::org::phenopackets::schema::v1::core::HtsFile* add_hts_files();
const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >&
hts_files() const;
// repeated .org.phenopackets.schema.v1.core.Variant variants = 15;
int variants_size() const;
void clear_variants();
static const int kVariantsFieldNumber = 15;
::org::phenopackets::schema::v1::core::Variant* mutable_variants(int index);
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Variant >*
mutable_variants();
const ::org::phenopackets::schema::v1::core::Variant& variants(int index) const;
::org::phenopackets::schema::v1::core::Variant* add_variants();
const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Variant >&
variants() const;
// string id = 1;
void clear_id();
static const int kIdFieldNumber = 1;
const std::string& id() const;
void set_id(const std::string& value);
void set_id(std::string&& value);
void set_id(const char* value);
void set_id(const char* value, size_t size);
std::string* mutable_id();
std::string* release_id();
void set_allocated_id(std::string* id);
// string individual_id = 2;
void clear_individual_id();
static const int kIndividualIdFieldNumber = 2;
const std::string& individual_id() const;
void set_individual_id(const std::string& value);
void set_individual_id(std::string&& value);
void set_individual_id(const char* value);
void set_individual_id(const char* value, size_t size);
std::string* mutable_individual_id();
std::string* release_individual_id();
void set_allocated_individual_id(std::string* individual_id);
// string description = 3;
void clear_description();
static const int kDescriptionFieldNumber = 3;
const std::string& description() const;
void set_description(const std::string& value);
void set_description(std::string&& value);
void set_description(const char* value);
void set_description(const char* value, size_t size);
std::string* mutable_description();
std::string* release_description();
void set_allocated_description(std::string* description);
// .org.phenopackets.schema.v1.core.OntologyClass sampled_tissue = 4;
bool has_sampled_tissue() const;
void clear_sampled_tissue();
static const int kSampledTissueFieldNumber = 4;
const ::org::phenopackets::schema::v1::core::OntologyClass& sampled_tissue() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_sampled_tissue();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_sampled_tissue();
void set_allocated_sampled_tissue(::org::phenopackets::schema::v1::core::OntologyClass* sampled_tissue);
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 6;
bool has_taxonomy() const;
void clear_taxonomy();
static const int kTaxonomyFieldNumber = 6;
const ::org::phenopackets::schema::v1::core::OntologyClass& taxonomy() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_taxonomy();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_taxonomy();
void set_allocated_taxonomy(::org::phenopackets::schema::v1::core::OntologyClass* taxonomy);
// .org.phenopackets.schema.v1.core.OntologyClass histological_diagnosis = 9;
bool has_histological_diagnosis() const;
void clear_histological_diagnosis();
static const int kHistologicalDiagnosisFieldNumber = 9;
const ::org::phenopackets::schema::v1::core::OntologyClass& histological_diagnosis() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_histological_diagnosis();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_histological_diagnosis();
void set_allocated_histological_diagnosis(::org::phenopackets::schema::v1::core::OntologyClass* histological_diagnosis);
// .org.phenopackets.schema.v1.core.OntologyClass tumor_progression = 10;
bool has_tumor_progression() const;
void clear_tumor_progression();
static const int kTumorProgressionFieldNumber = 10;
const ::org::phenopackets::schema::v1::core::OntologyClass& tumor_progression() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_tumor_progression();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_tumor_progression();
void set_allocated_tumor_progression(::org::phenopackets::schema::v1::core::OntologyClass* tumor_progression);
// .org.phenopackets.schema.v1.core.OntologyClass tumor_grade = 11;
bool has_tumor_grade() const;
void clear_tumor_grade();
static const int kTumorGradeFieldNumber = 11;
const ::org::phenopackets::schema::v1::core::OntologyClass& tumor_grade() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_tumor_grade();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_tumor_grade();
void set_allocated_tumor_grade(::org::phenopackets::schema::v1::core::OntologyClass* tumor_grade);
// .org.phenopackets.schema.v1.core.Procedure procedure = 13;
bool has_procedure() const;
void clear_procedure();
static const int kProcedureFieldNumber = 13;
const ::org::phenopackets::schema::v1::core::Procedure& procedure() const;
::org::phenopackets::schema::v1::core::Procedure* release_procedure();
::org::phenopackets::schema::v1::core::Procedure* mutable_procedure();
void set_allocated_procedure(::org::phenopackets::schema::v1::core::Procedure* procedure);
// bool is_control_sample = 16;
void clear_is_control_sample();
static const int kIsControlSampleFieldNumber = 16;
bool is_control_sample() const;
void set_is_control_sample(bool value);
// .org.phenopackets.schema.v1.core.Age age_of_individual_at_collection = 7;
bool has_age_of_individual_at_collection() const;
void clear_age_of_individual_at_collection();
static const int kAgeOfIndividualAtCollectionFieldNumber = 7;
const ::org::phenopackets::schema::v1::core::Age& age_of_individual_at_collection() const;
::org::phenopackets::schema::v1::core::Age* release_age_of_individual_at_collection();
::org::phenopackets::schema::v1::core::Age* mutable_age_of_individual_at_collection();
void set_allocated_age_of_individual_at_collection(::org::phenopackets::schema::v1::core::Age* age_of_individual_at_collection);
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_individual_at_collection = 8;
bool has_age_range_of_individual_at_collection() const;
void clear_age_range_of_individual_at_collection();
static const int kAgeRangeOfIndividualAtCollectionFieldNumber = 8;
const ::org::phenopackets::schema::v1::core::AgeRange& age_range_of_individual_at_collection() const;
::org::phenopackets::schema::v1::core::AgeRange* release_age_range_of_individual_at_collection();
::org::phenopackets::schema::v1::core::AgeRange* mutable_age_range_of_individual_at_collection();
void set_allocated_age_range_of_individual_at_collection(::org::phenopackets::schema::v1::core::AgeRange* age_range_of_individual_at_collection);
void clear_individual_age_at_collection();
IndividualAgeAtCollectionCase individual_age_at_collection_case() const;
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Biosample)
private:
class HasBitSetters;
void set_has_age_of_individual_at_collection();
void set_has_age_range_of_individual_at_collection();
inline bool has_individual_age_at_collection() const;
inline void clear_has_individual_age_at_collection();
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::PhenotypicFeature > phenotypic_features_;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass > diagnostic_markers_;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile > hts_files_;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Variant > variants_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr individual_id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr description_;
::org::phenopackets::schema::v1::core::OntologyClass* sampled_tissue_;
::org::phenopackets::schema::v1::core::OntologyClass* taxonomy_;
::org::phenopackets::schema::v1::core::OntologyClass* histological_diagnosis_;
::org::phenopackets::schema::v1::core::OntologyClass* tumor_progression_;
::org::phenopackets::schema::v1::core::OntologyClass* tumor_grade_;
::org::phenopackets::schema::v1::core::Procedure* procedure_;
bool is_control_sample_;
union IndividualAgeAtCollectionUnion {
IndividualAgeAtCollectionUnion() {}
::org::phenopackets::schema::v1::core::Age* age_of_individual_at_collection_;
::org::phenopackets::schema::v1::core::AgeRange* age_range_of_individual_at_collection_;
} individual_age_at_collection_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
::PROTOBUF_NAMESPACE_ID::uint32 _oneof_case_[1];
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class Procedure :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.Procedure) */ {
public:
Procedure();
virtual ~Procedure();
Procedure(const Procedure& from);
Procedure(Procedure&& from) noexcept
: Procedure() {
*this = ::std::move(from);
}
inline Procedure& operator=(const Procedure& from) {
CopyFrom(from);
return *this;
}
inline Procedure& operator=(Procedure&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const Procedure& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const Procedure* internal_default_instance() {
return reinterpret_cast(
&_Procedure_default_instance_);
}
static constexpr int kIndexInFileMessages =
9;
void Swap(Procedure* other);
friend void swap(Procedure& a, Procedure& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline Procedure* New() const final {
return CreateMaybeMessage(nullptr);
}
Procedure* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const Procedure& from);
void MergeFrom(const Procedure& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(Procedure* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.Procedure";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// .org.phenopackets.schema.v1.core.OntologyClass code = 1;
bool has_code() const;
void clear_code();
static const int kCodeFieldNumber = 1;
const ::org::phenopackets::schema::v1::core::OntologyClass& code() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_code();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_code();
void set_allocated_code(::org::phenopackets::schema::v1::core::OntologyClass* code);
// .org.phenopackets.schema.v1.core.OntologyClass body_site = 2;
bool has_body_site() const;
void clear_body_site();
static const int kBodySiteFieldNumber = 2;
const ::org::phenopackets::schema::v1::core::OntologyClass& body_site() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_body_site();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_body_site();
void set_allocated_body_site(::org::phenopackets::schema::v1::core::OntologyClass* body_site);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Procedure)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::org::phenopackets::schema::v1::core::OntologyClass* code_;
::org::phenopackets::schema::v1::core::OntologyClass* body_site_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class Age :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.Age) */ {
public:
Age();
virtual ~Age();
Age(const Age& from);
Age(Age&& from) noexcept
: Age() {
*this = ::std::move(from);
}
inline Age& operator=(const Age& from) {
CopyFrom(from);
return *this;
}
inline Age& operator=(Age&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const Age& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const Age* internal_default_instance() {
return reinterpret_cast(
&_Age_default_instance_);
}
static constexpr int kIndexInFileMessages =
10;
void Swap(Age* other);
friend void swap(Age& a, Age& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline Age* New() const final {
return CreateMaybeMessage(nullptr);
}
Age* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const Age& from);
void MergeFrom(const Age& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(Age* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.Age";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// string age = 1;
void clear_age();
static const int kAgeFieldNumber = 1;
const std::string& age() const;
void set_age(const std::string& value);
void set_age(std::string&& value);
void set_age(const char* value);
void set_age(const char* value, size_t size);
std::string* mutable_age();
std::string* release_age();
void set_allocated_age(std::string* age);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Age)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr age_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class AgeRange :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.AgeRange) */ {
public:
AgeRange();
virtual ~AgeRange();
AgeRange(const AgeRange& from);
AgeRange(AgeRange&& from) noexcept
: AgeRange() {
*this = ::std::move(from);
}
inline AgeRange& operator=(const AgeRange& from) {
CopyFrom(from);
return *this;
}
inline AgeRange& operator=(AgeRange&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const AgeRange& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const AgeRange* internal_default_instance() {
return reinterpret_cast(
&_AgeRange_default_instance_);
}
static constexpr int kIndexInFileMessages =
11;
void Swap(AgeRange* other);
friend void swap(AgeRange& a, AgeRange& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline AgeRange* New() const final {
return CreateMaybeMessage(nullptr);
}
AgeRange* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const AgeRange& from);
void MergeFrom(const AgeRange& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(AgeRange* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.AgeRange";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// .org.phenopackets.schema.v1.core.Age start = 1;
bool has_start() const;
void clear_start();
static const int kStartFieldNumber = 1;
const ::org::phenopackets::schema::v1::core::Age& start() const;
::org::phenopackets::schema::v1::core::Age* release_start();
::org::phenopackets::schema::v1::core::Age* mutable_start();
void set_allocated_start(::org::phenopackets::schema::v1::core::Age* start);
// .org.phenopackets.schema.v1.core.Age end = 2;
bool has_end() const;
void clear_end();
static const int kEndFieldNumber = 2;
const ::org::phenopackets::schema::v1::core::Age& end() const;
::org::phenopackets::schema::v1::core::Age* release_end();
::org::phenopackets::schema::v1::core::Age* mutable_end();
void set_allocated_end(::org::phenopackets::schema::v1::core::Age* end);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.AgeRange)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::org::phenopackets::schema::v1::core::Age* start_;
::org::phenopackets::schema::v1::core::Age* end_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class Disease :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.Disease) */ {
public:
Disease();
virtual ~Disease();
Disease(const Disease& from);
Disease(Disease&& from) noexcept
: Disease() {
*this = ::std::move(from);
}
inline Disease& operator=(const Disease& from) {
CopyFrom(from);
return *this;
}
inline Disease& operator=(Disease&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const Disease& default_instance();
enum OnsetCase {
kAgeOfOnset = 2,
kAgeRangeOfOnset = 3,
kClassOfOnset = 4,
ONSET_NOT_SET = 0,
};
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const Disease* internal_default_instance() {
return reinterpret_cast(
&_Disease_default_instance_);
}
static constexpr int kIndexInFileMessages =
12;
void Swap(Disease* other);
friend void swap(Disease& a, Disease& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline Disease* New() const final {
return CreateMaybeMessage(nullptr);
}
Disease* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const Disease& from);
void MergeFrom(const Disease& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(Disease* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.Disease";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
int tumor_stage_size() const;
void clear_tumor_stage();
static const int kTumorStageFieldNumber = 5;
::org::phenopackets::schema::v1::core::OntologyClass* mutable_tumor_stage(int index);
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass >*
mutable_tumor_stage();
const ::org::phenopackets::schema::v1::core::OntologyClass& tumor_stage(int index) const;
::org::phenopackets::schema::v1::core::OntologyClass* add_tumor_stage();
const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass >&
tumor_stage() const;
// .org.phenopackets.schema.v1.core.OntologyClass term = 1;
bool has_term() const;
void clear_term();
static const int kTermFieldNumber = 1;
const ::org::phenopackets::schema::v1::core::OntologyClass& term() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_term();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_term();
void set_allocated_term(::org::phenopackets::schema::v1::core::OntologyClass* term);
// .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
bool has_age_of_onset() const;
void clear_age_of_onset();
static const int kAgeOfOnsetFieldNumber = 2;
const ::org::phenopackets::schema::v1::core::Age& age_of_onset() const;
::org::phenopackets::schema::v1::core::Age* release_age_of_onset();
::org::phenopackets::schema::v1::core::Age* mutable_age_of_onset();
void set_allocated_age_of_onset(::org::phenopackets::schema::v1::core::Age* age_of_onset);
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
bool has_age_range_of_onset() const;
void clear_age_range_of_onset();
static const int kAgeRangeOfOnsetFieldNumber = 3;
const ::org::phenopackets::schema::v1::core::AgeRange& age_range_of_onset() const;
::org::phenopackets::schema::v1::core::AgeRange* release_age_range_of_onset();
::org::phenopackets::schema::v1::core::AgeRange* mutable_age_range_of_onset();
void set_allocated_age_range_of_onset(::org::phenopackets::schema::v1::core::AgeRange* age_range_of_onset);
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
bool has_class_of_onset() const;
void clear_class_of_onset();
static const int kClassOfOnsetFieldNumber = 4;
const ::org::phenopackets::schema::v1::core::OntologyClass& class_of_onset() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_class_of_onset();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_class_of_onset();
void set_allocated_class_of_onset(::org::phenopackets::schema::v1::core::OntologyClass* class_of_onset);
void clear_onset();
OnsetCase onset_case() const;
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Disease)
private:
class HasBitSetters;
void set_has_age_of_onset();
void set_has_age_range_of_onset();
void set_has_class_of_onset();
inline bool has_onset() const;
inline void clear_has_onset();
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass > tumor_stage_;
::org::phenopackets::schema::v1::core::OntologyClass* term_;
union OnsetUnion {
OnsetUnion() {}
::org::phenopackets::schema::v1::core::Age* age_of_onset_;
::org::phenopackets::schema::v1::core::AgeRange* age_range_of_onset_;
::org::phenopackets::schema::v1::core::OntologyClass* class_of_onset_;
} onset_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
::PROTOBUF_NAMESPACE_ID::uint32 _oneof_case_[1];
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class Pedigree_Person :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.Pedigree.Person) */ {
public:
Pedigree_Person();
virtual ~Pedigree_Person();
Pedigree_Person(const Pedigree_Person& from);
Pedigree_Person(Pedigree_Person&& from) noexcept
: Pedigree_Person() {
*this = ::std::move(from);
}
inline Pedigree_Person& operator=(const Pedigree_Person& from) {
CopyFrom(from);
return *this;
}
inline Pedigree_Person& operator=(Pedigree_Person&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const Pedigree_Person& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const Pedigree_Person* internal_default_instance() {
return reinterpret_cast(
&_Pedigree_Person_default_instance_);
}
static constexpr int kIndexInFileMessages =
13;
void Swap(Pedigree_Person* other);
friend void swap(Pedigree_Person& a, Pedigree_Person& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline Pedigree_Person* New() const final {
return CreateMaybeMessage(nullptr);
}
Pedigree_Person* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const Pedigree_Person& from);
void MergeFrom(const Pedigree_Person& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(Pedigree_Person* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.Pedigree.Person";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
typedef Pedigree_Person_AffectedStatus AffectedStatus;
static constexpr AffectedStatus MISSING =
Pedigree_Person_AffectedStatus_MISSING;
static constexpr AffectedStatus UNAFFECTED =
Pedigree_Person_AffectedStatus_UNAFFECTED;
static constexpr AffectedStatus AFFECTED =
Pedigree_Person_AffectedStatus_AFFECTED;
static inline bool AffectedStatus_IsValid(int value) {
return Pedigree_Person_AffectedStatus_IsValid(value);
}
static constexpr AffectedStatus AffectedStatus_MIN =
Pedigree_Person_AffectedStatus_AffectedStatus_MIN;
static constexpr AffectedStatus AffectedStatus_MAX =
Pedigree_Person_AffectedStatus_AffectedStatus_MAX;
static constexpr int AffectedStatus_ARRAYSIZE =
Pedigree_Person_AffectedStatus_AffectedStatus_ARRAYSIZE;
static inline const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor*
AffectedStatus_descriptor() {
return Pedigree_Person_AffectedStatus_descriptor();
}
template
static inline const std::string& AffectedStatus_Name(T enum_t_value) {
static_assert(::std::is_same::value ||
::std::is_integral::value,
"Incorrect type passed to function AffectedStatus_Name.");
return Pedigree_Person_AffectedStatus_Name(enum_t_value);
}
static inline bool AffectedStatus_Parse(const std::string& name,
AffectedStatus* value) {
return Pedigree_Person_AffectedStatus_Parse(name, value);
}
// accessors -------------------------------------------------------
// string family_id = 1;
void clear_family_id();
static const int kFamilyIdFieldNumber = 1;
const std::string& family_id() const;
void set_family_id(const std::string& value);
void set_family_id(std::string&& value);
void set_family_id(const char* value);
void set_family_id(const char* value, size_t size);
std::string* mutable_family_id();
std::string* release_family_id();
void set_allocated_family_id(std::string* family_id);
// string individual_id = 2;
void clear_individual_id();
static const int kIndividualIdFieldNumber = 2;
const std::string& individual_id() const;
void set_individual_id(const std::string& value);
void set_individual_id(std::string&& value);
void set_individual_id(const char* value);
void set_individual_id(const char* value, size_t size);
std::string* mutable_individual_id();
std::string* release_individual_id();
void set_allocated_individual_id(std::string* individual_id);
// string paternal_id = 3;
void clear_paternal_id();
static const int kPaternalIdFieldNumber = 3;
const std::string& paternal_id() const;
void set_paternal_id(const std::string& value);
void set_paternal_id(std::string&& value);
void set_paternal_id(const char* value);
void set_paternal_id(const char* value, size_t size);
std::string* mutable_paternal_id();
std::string* release_paternal_id();
void set_allocated_paternal_id(std::string* paternal_id);
// string maternal_id = 4;
void clear_maternal_id();
static const int kMaternalIdFieldNumber = 4;
const std::string& maternal_id() const;
void set_maternal_id(const std::string& value);
void set_maternal_id(std::string&& value);
void set_maternal_id(const char* value);
void set_maternal_id(const char* value, size_t size);
std::string* mutable_maternal_id();
std::string* release_maternal_id();
void set_allocated_maternal_id(std::string* maternal_id);
// .org.phenopackets.schema.v1.core.Sex sex = 5;
void clear_sex();
static const int kSexFieldNumber = 5;
::org::phenopackets::schema::v1::core::Sex sex() const;
void set_sex(::org::phenopackets::schema::v1::core::Sex value);
// .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
void clear_affected_status();
static const int kAffectedStatusFieldNumber = 6;
::org::phenopackets::schema::v1::core::Pedigree_Person_AffectedStatus affected_status() const;
void set_affected_status(::org::phenopackets::schema::v1::core::Pedigree_Person_AffectedStatus value);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Pedigree.Person)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr family_id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr individual_id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr paternal_id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr maternal_id_;
int sex_;
int affected_status_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class Pedigree :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.Pedigree) */ {
public:
Pedigree();
virtual ~Pedigree();
Pedigree(const Pedigree& from);
Pedigree(Pedigree&& from) noexcept
: Pedigree() {
*this = ::std::move(from);
}
inline Pedigree& operator=(const Pedigree& from) {
CopyFrom(from);
return *this;
}
inline Pedigree& operator=(Pedigree&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const Pedigree& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const Pedigree* internal_default_instance() {
return reinterpret_cast(
&_Pedigree_default_instance_);
}
static constexpr int kIndexInFileMessages =
14;
void Swap(Pedigree* other);
friend void swap(Pedigree& a, Pedigree& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline Pedigree* New() const final {
return CreateMaybeMessage(nullptr);
}
Pedigree* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const Pedigree& from);
void MergeFrom(const Pedigree& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(Pedigree* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.Pedigree";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
typedef Pedigree_Person Person;
// accessors -------------------------------------------------------
// repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
int persons_size() const;
void clear_persons();
static const int kPersonsFieldNumber = 1;
::org::phenopackets::schema::v1::core::Pedigree_Person* mutable_persons(int index);
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Pedigree_Person >*
mutable_persons();
const ::org::phenopackets::schema::v1::core::Pedigree_Person& persons(int index) const;
::org::phenopackets::schema::v1::core::Pedigree_Person* add_persons();
const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Pedigree_Person >&
persons() const;
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Pedigree)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Pedigree_Person > persons_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse : public ::PROTOBUF_NAMESPACE_ID::internal::MapEntry {
public:
typedef ::PROTOBUF_NAMESPACE_ID::internal::MapEntry SuperType;
HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse();
HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse(::PROTOBUF_NAMESPACE_ID::Arena* arena);
void MergeFrom(const HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse& other);
static const HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse* internal_default_instance() { return reinterpret_cast(&_HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse_default_instance_); }
static bool ValidateKey(std::string* s) {
return ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(s->data(), s->size(), ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE, "org.phenopackets.schema.v1.core.HtsFile.IndividualToSampleIdentifiersEntry.key");
}
static bool ValidateValue(std::string* s) {
return ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(s->data(), s->size(), ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE, "org.phenopackets.schema.v1.core.HtsFile.IndividualToSampleIdentifiersEntry.value");
}
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& other) final;
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[15];
}
public:
};
// -------------------------------------------------------------------
class HtsFile :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.HtsFile) */ {
public:
HtsFile();
virtual ~HtsFile();
HtsFile(const HtsFile& from);
HtsFile(HtsFile&& from) noexcept
: HtsFile() {
*this = ::std::move(from);
}
inline HtsFile& operator=(const HtsFile& from) {
CopyFrom(from);
return *this;
}
inline HtsFile& operator=(HtsFile&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const HtsFile& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const HtsFile* internal_default_instance() {
return reinterpret_cast(
&_HtsFile_default_instance_);
}
static constexpr int kIndexInFileMessages =
16;
void Swap(HtsFile* other);
friend void swap(HtsFile& a, HtsFile& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline HtsFile* New() const final {
return CreateMaybeMessage(nullptr);
}
HtsFile* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const HtsFile& from);
void MergeFrom(const HtsFile& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(HtsFile* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.HtsFile";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
typedef HtsFile_HtsFormat HtsFormat;
static constexpr HtsFormat UNKNOWN =
HtsFile_HtsFormat_UNKNOWN;
static constexpr HtsFormat SAM =
HtsFile_HtsFormat_SAM;
static constexpr HtsFormat BAM =
HtsFile_HtsFormat_BAM;
static constexpr HtsFormat CRAM =
HtsFile_HtsFormat_CRAM;
static constexpr HtsFormat VCF =
HtsFile_HtsFormat_VCF;
static constexpr HtsFormat BCF =
HtsFile_HtsFormat_BCF;
static constexpr HtsFormat GVCF =
HtsFile_HtsFormat_GVCF;
static inline bool HtsFormat_IsValid(int value) {
return HtsFile_HtsFormat_IsValid(value);
}
static constexpr HtsFormat HtsFormat_MIN =
HtsFile_HtsFormat_HtsFormat_MIN;
static constexpr HtsFormat HtsFormat_MAX =
HtsFile_HtsFormat_HtsFormat_MAX;
static constexpr int HtsFormat_ARRAYSIZE =
HtsFile_HtsFormat_HtsFormat_ARRAYSIZE;
static inline const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor*
HtsFormat_descriptor() {
return HtsFile_HtsFormat_descriptor();
}
template
static inline const std::string& HtsFormat_Name(T enum_t_value) {
static_assert(::std::is_same::value ||
::std::is_integral::value,
"Incorrect type passed to function HtsFormat_Name.");
return HtsFile_HtsFormat_Name(enum_t_value);
}
static inline bool HtsFormat_Parse(const std::string& name,
HtsFormat* value) {
return HtsFile_HtsFormat_Parse(name, value);
}
// accessors -------------------------------------------------------
// map individual_to_sample_identifiers = 5;
int individual_to_sample_identifiers_size() const;
void clear_individual_to_sample_identifiers();
static const int kIndividualToSampleIdentifiersFieldNumber = 5;
const ::PROTOBUF_NAMESPACE_ID::Map< std::string, std::string >&
individual_to_sample_identifiers() const;
::PROTOBUF_NAMESPACE_ID::Map< std::string, std::string >*
mutable_individual_to_sample_identifiers();
// string uri = 1;
void clear_uri();
static const int kUriFieldNumber = 1;
const std::string& uri() const;
void set_uri(const std::string& value);
void set_uri(std::string&& value);
void set_uri(const char* value);
void set_uri(const char* value, size_t size);
std::string* mutable_uri();
std::string* release_uri();
void set_allocated_uri(std::string* uri);
// string description = 2;
void clear_description();
static const int kDescriptionFieldNumber = 2;
const std::string& description() const;
void set_description(const std::string& value);
void set_description(std::string&& value);
void set_description(const char* value);
void set_description(const char* value, size_t size);
std::string* mutable_description();
std::string* release_description();
void set_allocated_description(std::string* description);
// string genome_assembly = 4;
void clear_genome_assembly();
static const int kGenomeAssemblyFieldNumber = 4;
const std::string& genome_assembly() const;
void set_genome_assembly(const std::string& value);
void set_genome_assembly(std::string&& value);
void set_genome_assembly(const char* value);
void set_genome_assembly(const char* value, size_t size);
std::string* mutable_genome_assembly();
std::string* release_genome_assembly();
void set_allocated_genome_assembly(std::string* genome_assembly);
// .org.phenopackets.schema.v1.core.HtsFile.HtsFormat hts_format = 3;
void clear_hts_format();
static const int kHtsFormatFieldNumber = 3;
::org::phenopackets::schema::v1::core::HtsFile_HtsFormat hts_format() const;
void set_hts_format(::org::phenopackets::schema::v1::core::HtsFile_HtsFormat value);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.HtsFile)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::internal::MapField<
HtsFile_IndividualToSampleIdentifiersEntry_DoNotUse,
std::string, std::string,
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::TYPE_STRING,
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::TYPE_STRING,
0 > individual_to_sample_identifiers_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr uri_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr description_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr genome_assembly_;
int hts_format_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class Gene :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.Gene) */ {
public:
Gene();
virtual ~Gene();
Gene(const Gene& from);
Gene(Gene&& from) noexcept
: Gene() {
*this = ::std::move(from);
}
inline Gene& operator=(const Gene& from) {
CopyFrom(from);
return *this;
}
inline Gene& operator=(Gene&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const Gene& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const Gene* internal_default_instance() {
return reinterpret_cast(
&_Gene_default_instance_);
}
static constexpr int kIndexInFileMessages =
17;
void Swap(Gene* other);
friend void swap(Gene& a, Gene& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline Gene* New() const final {
return CreateMaybeMessage(nullptr);
}
Gene* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const Gene& from);
void MergeFrom(const Gene& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(Gene* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.Gene";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// repeated string alternate_ids = 2;
int alternate_ids_size() const;
void clear_alternate_ids();
static const int kAlternateIdsFieldNumber = 2;
const std::string& alternate_ids(int index) const;
std::string* mutable_alternate_ids(int index);
void set_alternate_ids(int index, const std::string& value);
void set_alternate_ids(int index, std::string&& value);
void set_alternate_ids(int index, const char* value);
void set_alternate_ids(int index, const char* value, size_t size);
std::string* add_alternate_ids();
void add_alternate_ids(const std::string& value);
void add_alternate_ids(std::string&& value);
void add_alternate_ids(const char* value);
void add_alternate_ids(const char* value, size_t size);
const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField& alternate_ids() const;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField* mutable_alternate_ids();
// string id = 1;
void clear_id();
static const int kIdFieldNumber = 1;
const std::string& id() const;
void set_id(const std::string& value);
void set_id(std::string&& value);
void set_id(const char* value);
void set_id(const char* value, size_t size);
std::string* mutable_id();
std::string* release_id();
void set_allocated_id(std::string* id);
// string symbol = 3;
void clear_symbol();
static const int kSymbolFieldNumber = 3;
const std::string& symbol() const;
void set_symbol(const std::string& value);
void set_symbol(std::string&& value);
void set_symbol(const char* value);
void set_symbol(const char* value, size_t size);
std::string* mutable_symbol();
std::string* release_symbol();
void set_allocated_symbol(std::string* symbol);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Gene)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::RepeatedPtrField alternate_ids_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr symbol_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class Variant :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.Variant) */ {
public:
Variant();
virtual ~Variant();
Variant(const Variant& from);
Variant(Variant&& from) noexcept
: Variant() {
*this = ::std::move(from);
}
inline Variant& operator=(const Variant& from) {
CopyFrom(from);
return *this;
}
inline Variant& operator=(Variant&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const Variant& default_instance();
enum AlleleCase {
kHgvsAllele = 2,
kVcfAllele = 3,
kSpdiAllele = 4,
kIscnAllele = 5,
ALLELE_NOT_SET = 0,
};
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const Variant* internal_default_instance() {
return reinterpret_cast(
&_Variant_default_instance_);
}
static constexpr int kIndexInFileMessages =
18;
void Swap(Variant* other);
friend void swap(Variant& a, Variant& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline Variant* New() const final {
return CreateMaybeMessage(nullptr);
}
Variant* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const Variant& from);
void MergeFrom(const Variant& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(Variant* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.Variant";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
bool has_zygosity() const;
void clear_zygosity();
static const int kZygosityFieldNumber = 6;
const ::org::phenopackets::schema::v1::core::OntologyClass& zygosity() const;
::org::phenopackets::schema::v1::core::OntologyClass* release_zygosity();
::org::phenopackets::schema::v1::core::OntologyClass* mutable_zygosity();
void set_allocated_zygosity(::org::phenopackets::schema::v1::core::OntologyClass* zygosity);
// .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
bool has_hgvs_allele() const;
void clear_hgvs_allele();
static const int kHgvsAlleleFieldNumber = 2;
const ::org::phenopackets::schema::v1::core::HgvsAllele& hgvs_allele() const;
::org::phenopackets::schema::v1::core::HgvsAllele* release_hgvs_allele();
::org::phenopackets::schema::v1::core::HgvsAllele* mutable_hgvs_allele();
void set_allocated_hgvs_allele(::org::phenopackets::schema::v1::core::HgvsAllele* hgvs_allele);
// .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
bool has_vcf_allele() const;
void clear_vcf_allele();
static const int kVcfAlleleFieldNumber = 3;
const ::org::phenopackets::schema::v1::core::VcfAllele& vcf_allele() const;
::org::phenopackets::schema::v1::core::VcfAllele* release_vcf_allele();
::org::phenopackets::schema::v1::core::VcfAllele* mutable_vcf_allele();
void set_allocated_vcf_allele(::org::phenopackets::schema::v1::core::VcfAllele* vcf_allele);
// .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
bool has_spdi_allele() const;
void clear_spdi_allele();
static const int kSpdiAlleleFieldNumber = 4;
const ::org::phenopackets::schema::v1::core::SpdiAllele& spdi_allele() const;
::org::phenopackets::schema::v1::core::SpdiAllele* release_spdi_allele();
::org::phenopackets::schema::v1::core::SpdiAllele* mutable_spdi_allele();
void set_allocated_spdi_allele(::org::phenopackets::schema::v1::core::SpdiAllele* spdi_allele);
// .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
bool has_iscn_allele() const;
void clear_iscn_allele();
static const int kIscnAlleleFieldNumber = 5;
const ::org::phenopackets::schema::v1::core::IscnAllele& iscn_allele() const;
::org::phenopackets::schema::v1::core::IscnAllele* release_iscn_allele();
::org::phenopackets::schema::v1::core::IscnAllele* mutable_iscn_allele();
void set_allocated_iscn_allele(::org::phenopackets::schema::v1::core::IscnAllele* iscn_allele);
void clear_allele();
AlleleCase allele_case() const;
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.Variant)
private:
class HasBitSetters;
void set_has_hgvs_allele();
void set_has_vcf_allele();
void set_has_spdi_allele();
void set_has_iscn_allele();
inline bool has_allele() const;
inline void clear_has_allele();
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::org::phenopackets::schema::v1::core::OntologyClass* zygosity_;
union AlleleUnion {
AlleleUnion() {}
::org::phenopackets::schema::v1::core::HgvsAllele* hgvs_allele_;
::org::phenopackets::schema::v1::core::VcfAllele* vcf_allele_;
::org::phenopackets::schema::v1::core::SpdiAllele* spdi_allele_;
::org::phenopackets::schema::v1::core::IscnAllele* iscn_allele_;
} allele_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
::PROTOBUF_NAMESPACE_ID::uint32 _oneof_case_[1];
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class HgvsAllele :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.HgvsAllele) */ {
public:
HgvsAllele();
virtual ~HgvsAllele();
HgvsAllele(const HgvsAllele& from);
HgvsAllele(HgvsAllele&& from) noexcept
: HgvsAllele() {
*this = ::std::move(from);
}
inline HgvsAllele& operator=(const HgvsAllele& from) {
CopyFrom(from);
return *this;
}
inline HgvsAllele& operator=(HgvsAllele&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const HgvsAllele& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const HgvsAllele* internal_default_instance() {
return reinterpret_cast(
&_HgvsAllele_default_instance_);
}
static constexpr int kIndexInFileMessages =
19;
void Swap(HgvsAllele* other);
friend void swap(HgvsAllele& a, HgvsAllele& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline HgvsAllele* New() const final {
return CreateMaybeMessage(nullptr);
}
HgvsAllele* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const HgvsAllele& from);
void MergeFrom(const HgvsAllele& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(HgvsAllele* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.HgvsAllele";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// string id = 1;
void clear_id();
static const int kIdFieldNumber = 1;
const std::string& id() const;
void set_id(const std::string& value);
void set_id(std::string&& value);
void set_id(const char* value);
void set_id(const char* value, size_t size);
std::string* mutable_id();
std::string* release_id();
void set_allocated_id(std::string* id);
// string hgvs = 2;
void clear_hgvs();
static const int kHgvsFieldNumber = 2;
const std::string& hgvs() const;
void set_hgvs(const std::string& value);
void set_hgvs(std::string&& value);
void set_hgvs(const char* value);
void set_hgvs(const char* value, size_t size);
std::string* mutable_hgvs();
std::string* release_hgvs();
void set_allocated_hgvs(std::string* hgvs);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.HgvsAllele)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr hgvs_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class VcfAllele :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.VcfAllele) */ {
public:
VcfAllele();
virtual ~VcfAllele();
VcfAllele(const VcfAllele& from);
VcfAllele(VcfAllele&& from) noexcept
: VcfAllele() {
*this = ::std::move(from);
}
inline VcfAllele& operator=(const VcfAllele& from) {
CopyFrom(from);
return *this;
}
inline VcfAllele& operator=(VcfAllele&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const VcfAllele& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const VcfAllele* internal_default_instance() {
return reinterpret_cast(
&_VcfAllele_default_instance_);
}
static constexpr int kIndexInFileMessages =
20;
void Swap(VcfAllele* other);
friend void swap(VcfAllele& a, VcfAllele& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline VcfAllele* New() const final {
return CreateMaybeMessage(nullptr);
}
VcfAllele* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const VcfAllele& from);
void MergeFrom(const VcfAllele& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(VcfAllele* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.VcfAllele";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// string vcf_version = 1;
void clear_vcf_version();
static const int kVcfVersionFieldNumber = 1;
const std::string& vcf_version() const;
void set_vcf_version(const std::string& value);
void set_vcf_version(std::string&& value);
void set_vcf_version(const char* value);
void set_vcf_version(const char* value, size_t size);
std::string* mutable_vcf_version();
std::string* release_vcf_version();
void set_allocated_vcf_version(std::string* vcf_version);
// string genome_assembly = 2;
void clear_genome_assembly();
static const int kGenomeAssemblyFieldNumber = 2;
const std::string& genome_assembly() const;
void set_genome_assembly(const std::string& value);
void set_genome_assembly(std::string&& value);
void set_genome_assembly(const char* value);
void set_genome_assembly(const char* value, size_t size);
std::string* mutable_genome_assembly();
std::string* release_genome_assembly();
void set_allocated_genome_assembly(std::string* genome_assembly);
// string id = 3;
void clear_id();
static const int kIdFieldNumber = 3;
const std::string& id() const;
void set_id(const std::string& value);
void set_id(std::string&& value);
void set_id(const char* value);
void set_id(const char* value, size_t size);
std::string* mutable_id();
std::string* release_id();
void set_allocated_id(std::string* id);
// string chr = 4;
void clear_chr();
static const int kChrFieldNumber = 4;
const std::string& chr() const;
void set_chr(const std::string& value);
void set_chr(std::string&& value);
void set_chr(const char* value);
void set_chr(const char* value, size_t size);
std::string* mutable_chr();
std::string* release_chr();
void set_allocated_chr(std::string* chr);
// string ref = 6;
void clear_ref();
static const int kRefFieldNumber = 6;
const std::string& ref() const;
void set_ref(const std::string& value);
void set_ref(std::string&& value);
void set_ref(const char* value);
void set_ref(const char* value, size_t size);
std::string* mutable_ref();
std::string* release_ref();
void set_allocated_ref(std::string* ref);
// string alt = 7;
void clear_alt();
static const int kAltFieldNumber = 7;
const std::string& alt() const;
void set_alt(const std::string& value);
void set_alt(std::string&& value);
void set_alt(const char* value);
void set_alt(const char* value, size_t size);
std::string* mutable_alt();
std::string* release_alt();
void set_allocated_alt(std::string* alt);
// string info = 8;
void clear_info();
static const int kInfoFieldNumber = 8;
const std::string& info() const;
void set_info(const std::string& value);
void set_info(std::string&& value);
void set_info(const char* value);
void set_info(const char* value, size_t size);
std::string* mutable_info();
std::string* release_info();
void set_allocated_info(std::string* info);
// int32 pos = 5;
void clear_pos();
static const int kPosFieldNumber = 5;
::PROTOBUF_NAMESPACE_ID::int32 pos() const;
void set_pos(::PROTOBUF_NAMESPACE_ID::int32 value);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.VcfAllele)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr vcf_version_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr genome_assembly_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr chr_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr ref_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr alt_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr info_;
::PROTOBUF_NAMESPACE_ID::int32 pos_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class SpdiAllele :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.SpdiAllele) */ {
public:
SpdiAllele();
virtual ~SpdiAllele();
SpdiAllele(const SpdiAllele& from);
SpdiAllele(SpdiAllele&& from) noexcept
: SpdiAllele() {
*this = ::std::move(from);
}
inline SpdiAllele& operator=(const SpdiAllele& from) {
CopyFrom(from);
return *this;
}
inline SpdiAllele& operator=(SpdiAllele&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const SpdiAllele& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const SpdiAllele* internal_default_instance() {
return reinterpret_cast(
&_SpdiAllele_default_instance_);
}
static constexpr int kIndexInFileMessages =
21;
void Swap(SpdiAllele* other);
friend void swap(SpdiAllele& a, SpdiAllele& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline SpdiAllele* New() const final {
return CreateMaybeMessage(nullptr);
}
SpdiAllele* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const SpdiAllele& from);
void MergeFrom(const SpdiAllele& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(SpdiAllele* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.SpdiAllele";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// string id = 1;
void clear_id();
static const int kIdFieldNumber = 1;
const std::string& id() const;
void set_id(const std::string& value);
void set_id(std::string&& value);
void set_id(const char* value);
void set_id(const char* value, size_t size);
std::string* mutable_id();
std::string* release_id();
void set_allocated_id(std::string* id);
// string seq_id = 2;
void clear_seq_id();
static const int kSeqIdFieldNumber = 2;
const std::string& seq_id() const;
void set_seq_id(const std::string& value);
void set_seq_id(std::string&& value);
void set_seq_id(const char* value);
void set_seq_id(const char* value, size_t size);
std::string* mutable_seq_id();
std::string* release_seq_id();
void set_allocated_seq_id(std::string* seq_id);
// string deleted_sequence = 4;
void clear_deleted_sequence();
static const int kDeletedSequenceFieldNumber = 4;
const std::string& deleted_sequence() const;
void set_deleted_sequence(const std::string& value);
void set_deleted_sequence(std::string&& value);
void set_deleted_sequence(const char* value);
void set_deleted_sequence(const char* value, size_t size);
std::string* mutable_deleted_sequence();
std::string* release_deleted_sequence();
void set_allocated_deleted_sequence(std::string* deleted_sequence);
// string inserted_sequence = 5;
void clear_inserted_sequence();
static const int kInsertedSequenceFieldNumber = 5;
const std::string& inserted_sequence() const;
void set_inserted_sequence(const std::string& value);
void set_inserted_sequence(std::string&& value);
void set_inserted_sequence(const char* value);
void set_inserted_sequence(const char* value, size_t size);
std::string* mutable_inserted_sequence();
std::string* release_inserted_sequence();
void set_allocated_inserted_sequence(std::string* inserted_sequence);
// int32 position = 3;
void clear_position();
static const int kPositionFieldNumber = 3;
::PROTOBUF_NAMESPACE_ID::int32 position() const;
void set_position(::PROTOBUF_NAMESPACE_ID::int32 value);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.SpdiAllele)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr seq_id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr deleted_sequence_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr inserted_sequence_;
::PROTOBUF_NAMESPACE_ID::int32 position_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// -------------------------------------------------------------------
class IscnAllele :
public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.core.IscnAllele) */ {
public:
IscnAllele();
virtual ~IscnAllele();
IscnAllele(const IscnAllele& from);
IscnAllele(IscnAllele&& from) noexcept
: IscnAllele() {
*this = ::std::move(from);
}
inline IscnAllele& operator=(const IscnAllele& from) {
CopyFrom(from);
return *this;
}
inline IscnAllele& operator=(IscnAllele&& from) noexcept {
if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
if (this != &from) InternalSwap(&from);
} else {
CopyFrom(from);
}
return *this;
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
return GetDescriptor();
}
static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
return GetMetadataStatic().descriptor;
}
static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
return GetMetadataStatic().reflection;
}
static const IscnAllele& default_instance();
static void InitAsDefaultInstance(); // FOR INTERNAL USE ONLY
static inline const IscnAllele* internal_default_instance() {
return reinterpret_cast(
&_IscnAllele_default_instance_);
}
static constexpr int kIndexInFileMessages =
22;
void Swap(IscnAllele* other);
friend void swap(IscnAllele& a, IscnAllele& b) {
a.Swap(&b);
}
// implements Message ----------------------------------------------
inline IscnAllele* New() const final {
return CreateMaybeMessage(nullptr);
}
IscnAllele* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
return CreateMaybeMessage(arena);
}
void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
void CopyFrom(const IscnAllele& from);
void MergeFrom(const IscnAllele& from);
PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
bool IsInitialized() const final;
size_t ByteSizeLong() const final;
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
#else
bool MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
int GetCachedSize() const final { return _cached_size_.Get(); }
private:
inline void SharedCtor();
inline void SharedDtor();
void SetCachedSize(int size) const final;
void InternalSwap(IscnAllele* other);
friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
return "org.phenopackets.schema.v1.core.IscnAllele";
}
private:
inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
return nullptr;
}
inline void* MaybeArenaPtr() const {
return nullptr;
}
public:
::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
private:
static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_base_2eproto);
return ::descriptor_table_base_2eproto.file_level_metadata[kIndexInFileMessages];
}
public:
// nested types ----------------------------------------------------
// accessors -------------------------------------------------------
// string id = 1;
void clear_id();
static const int kIdFieldNumber = 1;
const std::string& id() const;
void set_id(const std::string& value);
void set_id(std::string&& value);
void set_id(const char* value);
void set_id(const char* value, size_t size);
std::string* mutable_id();
std::string* release_id();
void set_allocated_id(std::string* id);
// string iscn = 2;
void clear_iscn();
static const int kIscnFieldNumber = 2;
const std::string& iscn() const;
void set_iscn(const std::string& value);
void set_iscn(std::string&& value);
void set_iscn(const char* value);
void set_iscn(const char* value, size_t size);
std::string* mutable_iscn();
std::string* release_iscn();
void set_allocated_iscn(std::string* iscn);
// @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.core.IscnAllele)
private:
class HasBitSetters;
::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr id_;
::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr iscn_;
mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
friend struct ::TableStruct_base_2eproto;
};
// ===================================================================
// ===================================================================
#ifdef __GNUC__
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wstrict-aliasing"
#endif // __GNUC__
// MetaData
// .google.protobuf.Timestamp created = 1;
inline bool MetaData::has_created() const {
return this != internal_default_instance() && created_ != nullptr;
}
inline const PROTOBUF_NAMESPACE_ID::Timestamp& MetaData::created() const {
const PROTOBUF_NAMESPACE_ID::Timestamp* p = created_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.MetaData.created)
return p != nullptr ? *p : *reinterpret_cast(
&PROTOBUF_NAMESPACE_ID::_Timestamp_default_instance_);
}
inline PROTOBUF_NAMESPACE_ID::Timestamp* MetaData::release_created() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.MetaData.created)
PROTOBUF_NAMESPACE_ID::Timestamp* temp = created_;
created_ = nullptr;
return temp;
}
inline PROTOBUF_NAMESPACE_ID::Timestamp* MetaData::mutable_created() {
if (created_ == nullptr) {
auto* p = CreateMaybeMessage(GetArenaNoVirtual());
created_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.MetaData.created)
return created_;
}
inline void MetaData::set_allocated_created(PROTOBUF_NAMESPACE_ID::Timestamp* created) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete reinterpret_cast< ::PROTOBUF_NAMESPACE_ID::MessageLite*>(created_);
}
if (created) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena =
reinterpret_cast<::PROTOBUF_NAMESPACE_ID::MessageLite*>(created)->GetArena();
if (message_arena != submessage_arena) {
created = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, created, submessage_arena);
}
} else {
}
created_ = created;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.MetaData.created)
}
// string created_by = 2;
inline void MetaData::clear_created_by() {
created_by_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& MetaData::created_by() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.MetaData.created_by)
return created_by_.GetNoArena();
}
inline void MetaData::set_created_by(const std::string& value) {
created_by_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.MetaData.created_by)
}
inline void MetaData::set_created_by(std::string&& value) {
created_by_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.MetaData.created_by)
}
inline void MetaData::set_created_by(const char* value) {
GOOGLE_DCHECK(value != nullptr);
created_by_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.MetaData.created_by)
}
inline void MetaData::set_created_by(const char* value, size_t size) {
created_by_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.MetaData.created_by)
}
inline std::string* MetaData::mutable_created_by() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.MetaData.created_by)
return created_by_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* MetaData::release_created_by() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.MetaData.created_by)
return created_by_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void MetaData::set_allocated_created_by(std::string* created_by) {
if (created_by != nullptr) {
} else {
}
created_by_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), created_by);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.MetaData.created_by)
}
// string submitted_by = 3;
inline void MetaData::clear_submitted_by() {
submitted_by_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& MetaData::submitted_by() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.MetaData.submitted_by)
return submitted_by_.GetNoArena();
}
inline void MetaData::set_submitted_by(const std::string& value) {
submitted_by_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.MetaData.submitted_by)
}
inline void MetaData::set_submitted_by(std::string&& value) {
submitted_by_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.MetaData.submitted_by)
}
inline void MetaData::set_submitted_by(const char* value) {
GOOGLE_DCHECK(value != nullptr);
submitted_by_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.MetaData.submitted_by)
}
inline void MetaData::set_submitted_by(const char* value, size_t size) {
submitted_by_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.MetaData.submitted_by)
}
inline std::string* MetaData::mutable_submitted_by() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.MetaData.submitted_by)
return submitted_by_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* MetaData::release_submitted_by() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.MetaData.submitted_by)
return submitted_by_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void MetaData::set_allocated_submitted_by(std::string* submitted_by) {
if (submitted_by != nullptr) {
} else {
}
submitted_by_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), submitted_by);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.MetaData.submitted_by)
}
// repeated .org.phenopackets.schema.v1.core.Resource resources = 4;
inline int MetaData::resources_size() const {
return resources_.size();
}
inline void MetaData::clear_resources() {
resources_.Clear();
}
inline ::org::phenopackets::schema::v1::core::Resource* MetaData::mutable_resources(int index) {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.MetaData.resources)
return resources_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Resource >*
MetaData::mutable_resources() {
// @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.core.MetaData.resources)
return &resources_;
}
inline const ::org::phenopackets::schema::v1::core::Resource& MetaData::resources(int index) const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.MetaData.resources)
return resources_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::Resource* MetaData::add_resources() {
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.MetaData.resources)
return resources_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Resource >&
MetaData::resources() const {
// @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.core.MetaData.resources)
return resources_;
}
// repeated .org.phenopackets.schema.v1.core.Update updates = 5;
inline int MetaData::updates_size() const {
return updates_.size();
}
inline void MetaData::clear_updates() {
updates_.Clear();
}
inline ::org::phenopackets::schema::v1::core::Update* MetaData::mutable_updates(int index) {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.MetaData.updates)
return updates_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Update >*
MetaData::mutable_updates() {
// @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.core.MetaData.updates)
return &updates_;
}
inline const ::org::phenopackets::schema::v1::core::Update& MetaData::updates(int index) const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.MetaData.updates)
return updates_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::Update* MetaData::add_updates() {
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.MetaData.updates)
return updates_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Update >&
MetaData::updates() const {
// @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.core.MetaData.updates)
return updates_;
}
// string phenopacket_schema_version = 6;
inline void MetaData::clear_phenopacket_schema_version() {
phenopacket_schema_version_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& MetaData::phenopacket_schema_version() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.MetaData.phenopacket_schema_version)
return phenopacket_schema_version_.GetNoArena();
}
inline void MetaData::set_phenopacket_schema_version(const std::string& value) {
phenopacket_schema_version_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.MetaData.phenopacket_schema_version)
}
inline void MetaData::set_phenopacket_schema_version(std::string&& value) {
phenopacket_schema_version_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.MetaData.phenopacket_schema_version)
}
inline void MetaData::set_phenopacket_schema_version(const char* value) {
GOOGLE_DCHECK(value != nullptr);
phenopacket_schema_version_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.MetaData.phenopacket_schema_version)
}
inline void MetaData::set_phenopacket_schema_version(const char* value, size_t size) {
phenopacket_schema_version_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.MetaData.phenopacket_schema_version)
}
inline std::string* MetaData::mutable_phenopacket_schema_version() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.MetaData.phenopacket_schema_version)
return phenopacket_schema_version_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* MetaData::release_phenopacket_schema_version() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.MetaData.phenopacket_schema_version)
return phenopacket_schema_version_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void MetaData::set_allocated_phenopacket_schema_version(std::string* phenopacket_schema_version) {
if (phenopacket_schema_version != nullptr) {
} else {
}
phenopacket_schema_version_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), phenopacket_schema_version);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.MetaData.phenopacket_schema_version)
}
// repeated .org.phenopackets.schema.v1.core.ExternalReference external_references = 7;
inline int MetaData::external_references_size() const {
return external_references_.size();
}
inline void MetaData::clear_external_references() {
external_references_.Clear();
}
inline ::org::phenopackets::schema::v1::core::ExternalReference* MetaData::mutable_external_references(int index) {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.MetaData.external_references)
return external_references_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::ExternalReference >*
MetaData::mutable_external_references() {
// @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.core.MetaData.external_references)
return &external_references_;
}
inline const ::org::phenopackets::schema::v1::core::ExternalReference& MetaData::external_references(int index) const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.MetaData.external_references)
return external_references_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::ExternalReference* MetaData::add_external_references() {
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.MetaData.external_references)
return external_references_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::ExternalReference >&
MetaData::external_references() const {
// @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.core.MetaData.external_references)
return external_references_;
}
// -------------------------------------------------------------------
// Update
// .google.protobuf.Timestamp timestamp = 1 [(.validate.rules) = {
inline bool Update::has_timestamp() const {
return this != internal_default_instance() && timestamp_ != nullptr;
}
inline const PROTOBUF_NAMESPACE_ID::Timestamp& Update::timestamp() const {
const PROTOBUF_NAMESPACE_ID::Timestamp* p = timestamp_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Update.timestamp)
return p != nullptr ? *p : *reinterpret_cast(
&PROTOBUF_NAMESPACE_ID::_Timestamp_default_instance_);
}
inline PROTOBUF_NAMESPACE_ID::Timestamp* Update::release_timestamp() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Update.timestamp)
PROTOBUF_NAMESPACE_ID::Timestamp* temp = timestamp_;
timestamp_ = nullptr;
return temp;
}
inline PROTOBUF_NAMESPACE_ID::Timestamp* Update::mutable_timestamp() {
if (timestamp_ == nullptr) {
auto* p = CreateMaybeMessage(GetArenaNoVirtual());
timestamp_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Update.timestamp)
return timestamp_;
}
inline void Update::set_allocated_timestamp(PROTOBUF_NAMESPACE_ID::Timestamp* timestamp) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete reinterpret_cast< ::PROTOBUF_NAMESPACE_ID::MessageLite*>(timestamp_);
}
if (timestamp) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena =
reinterpret_cast<::PROTOBUF_NAMESPACE_ID::MessageLite*>(timestamp)->GetArena();
if (message_arena != submessage_arena) {
timestamp = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, timestamp, submessage_arena);
}
} else {
}
timestamp_ = timestamp;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Update.timestamp)
}
// string updated_by = 2;
inline void Update::clear_updated_by() {
updated_by_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Update::updated_by() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Update.updated_by)
return updated_by_.GetNoArena();
}
inline void Update::set_updated_by(const std::string& value) {
updated_by_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Update.updated_by)
}
inline void Update::set_updated_by(std::string&& value) {
updated_by_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Update.updated_by)
}
inline void Update::set_updated_by(const char* value) {
GOOGLE_DCHECK(value != nullptr);
updated_by_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Update.updated_by)
}
inline void Update::set_updated_by(const char* value, size_t size) {
updated_by_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Update.updated_by)
}
inline std::string* Update::mutable_updated_by() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Update.updated_by)
return updated_by_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Update::release_updated_by() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Update.updated_by)
return updated_by_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Update::set_allocated_updated_by(std::string* updated_by) {
if (updated_by != nullptr) {
} else {
}
updated_by_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), updated_by);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Update.updated_by)
}
// string comment = 3;
inline void Update::clear_comment() {
comment_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Update::comment() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Update.comment)
return comment_.GetNoArena();
}
inline void Update::set_comment(const std::string& value) {
comment_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Update.comment)
}
inline void Update::set_comment(std::string&& value) {
comment_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Update.comment)
}
inline void Update::set_comment(const char* value) {
GOOGLE_DCHECK(value != nullptr);
comment_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Update.comment)
}
inline void Update::set_comment(const char* value, size_t size) {
comment_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Update.comment)
}
inline std::string* Update::mutable_comment() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Update.comment)
return comment_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Update::release_comment() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Update.comment)
return comment_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Update::set_allocated_comment(std::string* comment) {
if (comment != nullptr) {
} else {
}
comment_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), comment);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Update.comment)
}
// -------------------------------------------------------------------
// Resource
// string id = 1;
inline void Resource::clear_id() {
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Resource::id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Resource.id)
return id_.GetNoArena();
}
inline void Resource::set_id(const std::string& value) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Resource.id)
}
inline void Resource::set_id(std::string&& value) {
id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Resource.id)
}
inline void Resource::set_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Resource.id)
}
inline void Resource::set_id(const char* value, size_t size) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Resource.id)
}
inline std::string* Resource::mutable_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Resource.id)
return id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Resource::release_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Resource.id)
return id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Resource::set_allocated_id(std::string* id) {
if (id != nullptr) {
} else {
}
id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Resource.id)
}
// string name = 2;
inline void Resource::clear_name() {
name_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Resource::name() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Resource.name)
return name_.GetNoArena();
}
inline void Resource::set_name(const std::string& value) {
name_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Resource.name)
}
inline void Resource::set_name(std::string&& value) {
name_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Resource.name)
}
inline void Resource::set_name(const char* value) {
GOOGLE_DCHECK(value != nullptr);
name_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Resource.name)
}
inline void Resource::set_name(const char* value, size_t size) {
name_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Resource.name)
}
inline std::string* Resource::mutable_name() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Resource.name)
return name_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Resource::release_name() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Resource.name)
return name_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Resource::set_allocated_name(std::string* name) {
if (name != nullptr) {
} else {
}
name_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), name);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Resource.name)
}
// string url = 3;
inline void Resource::clear_url() {
url_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Resource::url() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Resource.url)
return url_.GetNoArena();
}
inline void Resource::set_url(const std::string& value) {
url_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Resource.url)
}
inline void Resource::set_url(std::string&& value) {
url_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Resource.url)
}
inline void Resource::set_url(const char* value) {
GOOGLE_DCHECK(value != nullptr);
url_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Resource.url)
}
inline void Resource::set_url(const char* value, size_t size) {
url_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Resource.url)
}
inline std::string* Resource::mutable_url() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Resource.url)
return url_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Resource::release_url() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Resource.url)
return url_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Resource::set_allocated_url(std::string* url) {
if (url != nullptr) {
} else {
}
url_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), url);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Resource.url)
}
// string version = 4;
inline void Resource::clear_version() {
version_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Resource::version() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Resource.version)
return version_.GetNoArena();
}
inline void Resource::set_version(const std::string& value) {
version_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Resource.version)
}
inline void Resource::set_version(std::string&& value) {
version_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Resource.version)
}
inline void Resource::set_version(const char* value) {
GOOGLE_DCHECK(value != nullptr);
version_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Resource.version)
}
inline void Resource::set_version(const char* value, size_t size) {
version_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Resource.version)
}
inline std::string* Resource::mutable_version() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Resource.version)
return version_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Resource::release_version() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Resource.version)
return version_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Resource::set_allocated_version(std::string* version) {
if (version != nullptr) {
} else {
}
version_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), version);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Resource.version)
}
// string namespace_prefix = 5;
inline void Resource::clear_namespace_prefix() {
namespace_prefix_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Resource::namespace_prefix() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Resource.namespace_prefix)
return namespace_prefix_.GetNoArena();
}
inline void Resource::set_namespace_prefix(const std::string& value) {
namespace_prefix_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Resource.namespace_prefix)
}
inline void Resource::set_namespace_prefix(std::string&& value) {
namespace_prefix_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Resource.namespace_prefix)
}
inline void Resource::set_namespace_prefix(const char* value) {
GOOGLE_DCHECK(value != nullptr);
namespace_prefix_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Resource.namespace_prefix)
}
inline void Resource::set_namespace_prefix(const char* value, size_t size) {
namespace_prefix_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Resource.namespace_prefix)
}
inline std::string* Resource::mutable_namespace_prefix() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Resource.namespace_prefix)
return namespace_prefix_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Resource::release_namespace_prefix() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Resource.namespace_prefix)
return namespace_prefix_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Resource::set_allocated_namespace_prefix(std::string* namespace_prefix) {
if (namespace_prefix != nullptr) {
} else {
}
namespace_prefix_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), namespace_prefix);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Resource.namespace_prefix)
}
// string iri_prefix = 6;
inline void Resource::clear_iri_prefix() {
iri_prefix_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Resource::iri_prefix() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Resource.iri_prefix)
return iri_prefix_.GetNoArena();
}
inline void Resource::set_iri_prefix(const std::string& value) {
iri_prefix_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Resource.iri_prefix)
}
inline void Resource::set_iri_prefix(std::string&& value) {
iri_prefix_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Resource.iri_prefix)
}
inline void Resource::set_iri_prefix(const char* value) {
GOOGLE_DCHECK(value != nullptr);
iri_prefix_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Resource.iri_prefix)
}
inline void Resource::set_iri_prefix(const char* value, size_t size) {
iri_prefix_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Resource.iri_prefix)
}
inline std::string* Resource::mutable_iri_prefix() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Resource.iri_prefix)
return iri_prefix_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Resource::release_iri_prefix() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Resource.iri_prefix)
return iri_prefix_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Resource::set_allocated_iri_prefix(std::string* iri_prefix) {
if (iri_prefix != nullptr) {
} else {
}
iri_prefix_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), iri_prefix);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Resource.iri_prefix)
}
// -------------------------------------------------------------------
// OntologyClass
// string id = 1;
inline void OntologyClass::clear_id() {
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& OntologyClass::id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.OntologyClass.id)
return id_.GetNoArena();
}
inline void OntologyClass::set_id(const std::string& value) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.OntologyClass.id)
}
inline void OntologyClass::set_id(std::string&& value) {
id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.OntologyClass.id)
}
inline void OntologyClass::set_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.OntologyClass.id)
}
inline void OntologyClass::set_id(const char* value, size_t size) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.OntologyClass.id)
}
inline std::string* OntologyClass::mutable_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.OntologyClass.id)
return id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* OntologyClass::release_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.OntologyClass.id)
return id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void OntologyClass::set_allocated_id(std::string* id) {
if (id != nullptr) {
} else {
}
id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.OntologyClass.id)
}
// string label = 2;
inline void OntologyClass::clear_label() {
label_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& OntologyClass::label() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.OntologyClass.label)
return label_.GetNoArena();
}
inline void OntologyClass::set_label(const std::string& value) {
label_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.OntologyClass.label)
}
inline void OntologyClass::set_label(std::string&& value) {
label_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.OntologyClass.label)
}
inline void OntologyClass::set_label(const char* value) {
GOOGLE_DCHECK(value != nullptr);
label_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.OntologyClass.label)
}
inline void OntologyClass::set_label(const char* value, size_t size) {
label_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.OntologyClass.label)
}
inline std::string* OntologyClass::mutable_label() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.OntologyClass.label)
return label_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* OntologyClass::release_label() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.OntologyClass.label)
return label_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void OntologyClass::set_allocated_label(std::string* label) {
if (label != nullptr) {
} else {
}
label_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), label);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.OntologyClass.label)
}
// -------------------------------------------------------------------
// PhenotypicFeature
// string description = 1;
inline void PhenotypicFeature::clear_description() {
description_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& PhenotypicFeature::description() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.PhenotypicFeature.description)
return description_.GetNoArena();
}
inline void PhenotypicFeature::set_description(const std::string& value) {
description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.PhenotypicFeature.description)
}
inline void PhenotypicFeature::set_description(std::string&& value) {
description_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.PhenotypicFeature.description)
}
inline void PhenotypicFeature::set_description(const char* value) {
GOOGLE_DCHECK(value != nullptr);
description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.PhenotypicFeature.description)
}
inline void PhenotypicFeature::set_description(const char* value, size_t size) {
description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.PhenotypicFeature.description)
}
inline std::string* PhenotypicFeature::mutable_description() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.PhenotypicFeature.description)
return description_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* PhenotypicFeature::release_description() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.PhenotypicFeature.description)
return description_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void PhenotypicFeature::set_allocated_description(std::string* description) {
if (description != nullptr) {
} else {
}
description_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), description);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.PhenotypicFeature.description)
}
// .org.phenopackets.schema.v1.core.OntologyClass type = 2;
inline bool PhenotypicFeature::has_type() const {
return this != internal_default_instance() && type_ != nullptr;
}
inline void PhenotypicFeature::clear_type() {
if (GetArenaNoVirtual() == nullptr && type_ != nullptr) {
delete type_;
}
type_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& PhenotypicFeature::type() const {
const ::org::phenopackets::schema::v1::core::OntologyClass* p = type_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.PhenotypicFeature.type)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* PhenotypicFeature::release_type() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.PhenotypicFeature.type)
::org::phenopackets::schema::v1::core::OntologyClass* temp = type_;
type_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* PhenotypicFeature::mutable_type() {
if (type_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(GetArenaNoVirtual());
type_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.PhenotypicFeature.type)
return type_;
}
inline void PhenotypicFeature::set_allocated_type(::org::phenopackets::schema::v1::core::OntologyClass* type) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete type_;
}
if (type) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
type = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, type, submessage_arena);
}
} else {
}
type_ = type;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.PhenotypicFeature.type)
}
// bool negated = 3;
inline void PhenotypicFeature::clear_negated() {
negated_ = false;
}
inline bool PhenotypicFeature::negated() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.PhenotypicFeature.negated)
return negated_;
}
inline void PhenotypicFeature::set_negated(bool value) {
negated_ = value;
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.PhenotypicFeature.negated)
}
// .org.phenopackets.schema.v1.core.OntologyClass severity = 4;
inline bool PhenotypicFeature::has_severity() const {
return this != internal_default_instance() && severity_ != nullptr;
}
inline void PhenotypicFeature::clear_severity() {
if (GetArenaNoVirtual() == nullptr && severity_ != nullptr) {
delete severity_;
}
severity_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& PhenotypicFeature::severity() const {
const ::org::phenopackets::schema::v1::core::OntologyClass* p = severity_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.PhenotypicFeature.severity)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* PhenotypicFeature::release_severity() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.PhenotypicFeature.severity)
::org::phenopackets::schema::v1::core::OntologyClass* temp = severity_;
severity_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* PhenotypicFeature::mutable_severity() {
if (severity_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(GetArenaNoVirtual());
severity_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.PhenotypicFeature.severity)
return severity_;
}
inline void PhenotypicFeature::set_allocated_severity(::org::phenopackets::schema::v1::core::OntologyClass* severity) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete severity_;
}
if (severity) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
severity = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, severity, submessage_arena);
}
} else {
}
severity_ = severity;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.PhenotypicFeature.severity)
}
// repeated .org.phenopackets.schema.v1.core.OntologyClass modifiers = 5;
inline int PhenotypicFeature::modifiers_size() const {
return modifiers_.size();
}
inline void PhenotypicFeature::clear_modifiers() {
modifiers_.Clear();
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* PhenotypicFeature::mutable_modifiers(int index) {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.PhenotypicFeature.modifiers)
return modifiers_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass >*
PhenotypicFeature::mutable_modifiers() {
// @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.core.PhenotypicFeature.modifiers)
return &modifiers_;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& PhenotypicFeature::modifiers(int index) const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.PhenotypicFeature.modifiers)
return modifiers_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* PhenotypicFeature::add_modifiers() {
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.PhenotypicFeature.modifiers)
return modifiers_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass >&
PhenotypicFeature::modifiers() const {
// @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.core.PhenotypicFeature.modifiers)
return modifiers_;
}
// .org.phenopackets.schema.v1.core.Age age_of_onset = 6;
inline bool PhenotypicFeature::has_age_of_onset() const {
return onset_case() == kAgeOfOnset;
}
inline void PhenotypicFeature::set_has_age_of_onset() {
_oneof_case_[0] = kAgeOfOnset;
}
inline void PhenotypicFeature::clear_age_of_onset() {
if (has_age_of_onset()) {
delete onset_.age_of_onset_;
clear_has_onset();
}
}
inline ::org::phenopackets::schema::v1::core::Age* PhenotypicFeature::release_age_of_onset() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.PhenotypicFeature.age_of_onset)
if (has_age_of_onset()) {
clear_has_onset();
::org::phenopackets::schema::v1::core::Age* temp = onset_.age_of_onset_;
onset_.age_of_onset_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::Age& PhenotypicFeature::age_of_onset() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.PhenotypicFeature.age_of_onset)
return has_age_of_onset()
? *onset_.age_of_onset_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::Age*>(&::org::phenopackets::schema::v1::core::_Age_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::Age* PhenotypicFeature::mutable_age_of_onset() {
if (!has_age_of_onset()) {
clear_onset();
set_has_age_of_onset();
onset_.age_of_onset_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::Age >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.PhenotypicFeature.age_of_onset)
return onset_.age_of_onset_;
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 7;
inline bool PhenotypicFeature::has_age_range_of_onset() const {
return onset_case() == kAgeRangeOfOnset;
}
inline void PhenotypicFeature::set_has_age_range_of_onset() {
_oneof_case_[0] = kAgeRangeOfOnset;
}
inline void PhenotypicFeature::clear_age_range_of_onset() {
if (has_age_range_of_onset()) {
delete onset_.age_range_of_onset_;
clear_has_onset();
}
}
inline ::org::phenopackets::schema::v1::core::AgeRange* PhenotypicFeature::release_age_range_of_onset() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.PhenotypicFeature.age_range_of_onset)
if (has_age_range_of_onset()) {
clear_has_onset();
::org::phenopackets::schema::v1::core::AgeRange* temp = onset_.age_range_of_onset_;
onset_.age_range_of_onset_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::AgeRange& PhenotypicFeature::age_range_of_onset() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.PhenotypicFeature.age_range_of_onset)
return has_age_range_of_onset()
? *onset_.age_range_of_onset_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::AgeRange*>(&::org::phenopackets::schema::v1::core::_AgeRange_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::AgeRange* PhenotypicFeature::mutable_age_range_of_onset() {
if (!has_age_range_of_onset()) {
clear_onset();
set_has_age_range_of_onset();
onset_.age_range_of_onset_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::AgeRange >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.PhenotypicFeature.age_range_of_onset)
return onset_.age_range_of_onset_;
}
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 9;
inline bool PhenotypicFeature::has_class_of_onset() const {
return onset_case() == kClassOfOnset;
}
inline void PhenotypicFeature::set_has_class_of_onset() {
_oneof_case_[0] = kClassOfOnset;
}
inline void PhenotypicFeature::clear_class_of_onset() {
if (has_class_of_onset()) {
delete onset_.class_of_onset_;
clear_has_onset();
}
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* PhenotypicFeature::release_class_of_onset() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.PhenotypicFeature.class_of_onset)
if (has_class_of_onset()) {
clear_has_onset();
::org::phenopackets::schema::v1::core::OntologyClass* temp = onset_.class_of_onset_;
onset_.class_of_onset_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& PhenotypicFeature::class_of_onset() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.PhenotypicFeature.class_of_onset)
return has_class_of_onset()
? *onset_.class_of_onset_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* PhenotypicFeature::mutable_class_of_onset() {
if (!has_class_of_onset()) {
clear_onset();
set_has_class_of_onset();
onset_.class_of_onset_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::OntologyClass >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.PhenotypicFeature.class_of_onset)
return onset_.class_of_onset_;
}
// repeated .org.phenopackets.schema.v1.core.Evidence evidence = 10;
inline int PhenotypicFeature::evidence_size() const {
return evidence_.size();
}
inline void PhenotypicFeature::clear_evidence() {
evidence_.Clear();
}
inline ::org::phenopackets::schema::v1::core::Evidence* PhenotypicFeature::mutable_evidence(int index) {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.PhenotypicFeature.evidence)
return evidence_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Evidence >*
PhenotypicFeature::mutable_evidence() {
// @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.core.PhenotypicFeature.evidence)
return &evidence_;
}
inline const ::org::phenopackets::schema::v1::core::Evidence& PhenotypicFeature::evidence(int index) const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.PhenotypicFeature.evidence)
return evidence_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::Evidence* PhenotypicFeature::add_evidence() {
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.PhenotypicFeature.evidence)
return evidence_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Evidence >&
PhenotypicFeature::evidence() const {
// @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.core.PhenotypicFeature.evidence)
return evidence_;
}
inline bool PhenotypicFeature::has_onset() const {
return onset_case() != ONSET_NOT_SET;
}
inline void PhenotypicFeature::clear_has_onset() {
_oneof_case_[0] = ONSET_NOT_SET;
}
inline PhenotypicFeature::OnsetCase PhenotypicFeature::onset_case() const {
return PhenotypicFeature::OnsetCase(_oneof_case_[0]);
}
// -------------------------------------------------------------------
// Evidence
// .org.phenopackets.schema.v1.core.OntologyClass evidence_code = 1;
inline bool Evidence::has_evidence_code() const {
return this != internal_default_instance() && evidence_code_ != nullptr;
}
inline void Evidence::clear_evidence_code() {
if (GetArenaNoVirtual() == nullptr && evidence_code_ != nullptr) {
delete evidence_code_;
}
evidence_code_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Evidence::evidence_code() const {
const ::org::phenopackets::schema::v1::core::OntologyClass* p = evidence_code_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Evidence.evidence_code)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Evidence::release_evidence_code() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Evidence.evidence_code)
::org::phenopackets::schema::v1::core::OntologyClass* temp = evidence_code_;
evidence_code_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Evidence::mutable_evidence_code() {
if (evidence_code_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(GetArenaNoVirtual());
evidence_code_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Evidence.evidence_code)
return evidence_code_;
}
inline void Evidence::set_allocated_evidence_code(::org::phenopackets::schema::v1::core::OntologyClass* evidence_code) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete evidence_code_;
}
if (evidence_code) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
evidence_code = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, evidence_code, submessage_arena);
}
} else {
}
evidence_code_ = evidence_code;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Evidence.evidence_code)
}
// .org.phenopackets.schema.v1.core.ExternalReference reference = 2;
inline bool Evidence::has_reference() const {
return this != internal_default_instance() && reference_ != nullptr;
}
inline void Evidence::clear_reference() {
if (GetArenaNoVirtual() == nullptr && reference_ != nullptr) {
delete reference_;
}
reference_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::ExternalReference& Evidence::reference() const {
const ::org::phenopackets::schema::v1::core::ExternalReference* p = reference_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Evidence.reference)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_ExternalReference_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::ExternalReference* Evidence::release_reference() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Evidence.reference)
::org::phenopackets::schema::v1::core::ExternalReference* temp = reference_;
reference_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::ExternalReference* Evidence::mutable_reference() {
if (reference_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::ExternalReference>(GetArenaNoVirtual());
reference_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Evidence.reference)
return reference_;
}
inline void Evidence::set_allocated_reference(::org::phenopackets::schema::v1::core::ExternalReference* reference) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete reference_;
}
if (reference) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
reference = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, reference, submessage_arena);
}
} else {
}
reference_ = reference;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Evidence.reference)
}
// -------------------------------------------------------------------
// ExternalReference
// string id = 1;
inline void ExternalReference::clear_id() {
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& ExternalReference::id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.ExternalReference.id)
return id_.GetNoArena();
}
inline void ExternalReference::set_id(const std::string& value) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.ExternalReference.id)
}
inline void ExternalReference::set_id(std::string&& value) {
id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.ExternalReference.id)
}
inline void ExternalReference::set_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.ExternalReference.id)
}
inline void ExternalReference::set_id(const char* value, size_t size) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.ExternalReference.id)
}
inline std::string* ExternalReference::mutable_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.ExternalReference.id)
return id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* ExternalReference::release_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.ExternalReference.id)
return id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void ExternalReference::set_allocated_id(std::string* id) {
if (id != nullptr) {
} else {
}
id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.ExternalReference.id)
}
// string description = 2;
inline void ExternalReference::clear_description() {
description_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& ExternalReference::description() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.ExternalReference.description)
return description_.GetNoArena();
}
inline void ExternalReference::set_description(const std::string& value) {
description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.ExternalReference.description)
}
inline void ExternalReference::set_description(std::string&& value) {
description_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.ExternalReference.description)
}
inline void ExternalReference::set_description(const char* value) {
GOOGLE_DCHECK(value != nullptr);
description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.ExternalReference.description)
}
inline void ExternalReference::set_description(const char* value, size_t size) {
description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.ExternalReference.description)
}
inline std::string* ExternalReference::mutable_description() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.ExternalReference.description)
return description_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* ExternalReference::release_description() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.ExternalReference.description)
return description_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void ExternalReference::set_allocated_description(std::string* description) {
if (description != nullptr) {
} else {
}
description_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), description);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.ExternalReference.description)
}
// -------------------------------------------------------------------
// Individual
// string id = 1;
inline void Individual::clear_id() {
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Individual::id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Individual.id)
return id_.GetNoArena();
}
inline void Individual::set_id(const std::string& value) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Individual.id)
}
inline void Individual::set_id(std::string&& value) {
id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Individual.id)
}
inline void Individual::set_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Individual.id)
}
inline void Individual::set_id(const char* value, size_t size) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Individual.id)
}
inline std::string* Individual::mutable_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Individual.id)
return id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Individual::release_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Individual.id)
return id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Individual::set_allocated_id(std::string* id) {
if (id != nullptr) {
} else {
}
id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Individual.id)
}
// repeated string alternate_ids = 2;
inline int Individual::alternate_ids_size() const {
return alternate_ids_.size();
}
inline void Individual::clear_alternate_ids() {
alternate_ids_.Clear();
}
inline const std::string& Individual::alternate_ids(int index) const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Individual.alternate_ids)
return alternate_ids_.Get(index);
}
inline std::string* Individual::mutable_alternate_ids(int index) {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Individual.alternate_ids)
return alternate_ids_.Mutable(index);
}
inline void Individual::set_alternate_ids(int index, const std::string& value) {
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Individual.alternate_ids)
alternate_ids_.Mutable(index)->assign(value);
}
inline void Individual::set_alternate_ids(int index, std::string&& value) {
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Individual.alternate_ids)
alternate_ids_.Mutable(index)->assign(std::move(value));
}
inline void Individual::set_alternate_ids(int index, const char* value) {
GOOGLE_DCHECK(value != nullptr);
alternate_ids_.Mutable(index)->assign(value);
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Individual.alternate_ids)
}
inline void Individual::set_alternate_ids(int index, const char* value, size_t size) {
alternate_ids_.Mutable(index)->assign(
reinterpret_cast(value), size);
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Individual.alternate_ids)
}
inline std::string* Individual::add_alternate_ids() {
// @@protoc_insertion_point(field_add_mutable:org.phenopackets.schema.v1.core.Individual.alternate_ids)
return alternate_ids_.Add();
}
inline void Individual::add_alternate_ids(const std::string& value) {
alternate_ids_.Add()->assign(value);
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.Individual.alternate_ids)
}
inline void Individual::add_alternate_ids(std::string&& value) {
alternate_ids_.Add(std::move(value));
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.Individual.alternate_ids)
}
inline void Individual::add_alternate_ids(const char* value) {
GOOGLE_DCHECK(value != nullptr);
alternate_ids_.Add()->assign(value);
// @@protoc_insertion_point(field_add_char:org.phenopackets.schema.v1.core.Individual.alternate_ids)
}
inline void Individual::add_alternate_ids(const char* value, size_t size) {
alternate_ids_.Add()->assign(reinterpret_cast(value), size);
// @@protoc_insertion_point(field_add_pointer:org.phenopackets.schema.v1.core.Individual.alternate_ids)
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField&
Individual::alternate_ids() const {
// @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.core.Individual.alternate_ids)
return alternate_ids_;
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField*
Individual::mutable_alternate_ids() {
// @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.core.Individual.alternate_ids)
return &alternate_ids_;
}
// .google.protobuf.Timestamp date_of_birth = 3;
inline bool Individual::has_date_of_birth() const {
return this != internal_default_instance() && date_of_birth_ != nullptr;
}
inline const PROTOBUF_NAMESPACE_ID::Timestamp& Individual::date_of_birth() const {
const PROTOBUF_NAMESPACE_ID::Timestamp* p = date_of_birth_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Individual.date_of_birth)
return p != nullptr ? *p : *reinterpret_cast(
&PROTOBUF_NAMESPACE_ID::_Timestamp_default_instance_);
}
inline PROTOBUF_NAMESPACE_ID::Timestamp* Individual::release_date_of_birth() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Individual.date_of_birth)
PROTOBUF_NAMESPACE_ID::Timestamp* temp = date_of_birth_;
date_of_birth_ = nullptr;
return temp;
}
inline PROTOBUF_NAMESPACE_ID::Timestamp* Individual::mutable_date_of_birth() {
if (date_of_birth_ == nullptr) {
auto* p = CreateMaybeMessage(GetArenaNoVirtual());
date_of_birth_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Individual.date_of_birth)
return date_of_birth_;
}
inline void Individual::set_allocated_date_of_birth(PROTOBUF_NAMESPACE_ID::Timestamp* date_of_birth) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete reinterpret_cast< ::PROTOBUF_NAMESPACE_ID::MessageLite*>(date_of_birth_);
}
if (date_of_birth) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena =
reinterpret_cast<::PROTOBUF_NAMESPACE_ID::MessageLite*>(date_of_birth)->GetArena();
if (message_arena != submessage_arena) {
date_of_birth = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, date_of_birth, submessage_arena);
}
} else {
}
date_of_birth_ = date_of_birth;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Individual.date_of_birth)
}
// .org.phenopackets.schema.v1.core.Age age_at_collection = 4;
inline bool Individual::has_age_at_collection() const {
return age_case() == kAgeAtCollection;
}
inline void Individual::set_has_age_at_collection() {
_oneof_case_[0] = kAgeAtCollection;
}
inline void Individual::clear_age_at_collection() {
if (has_age_at_collection()) {
delete age_.age_at_collection_;
clear_has_age();
}
}
inline ::org::phenopackets::schema::v1::core::Age* Individual::release_age_at_collection() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Individual.age_at_collection)
if (has_age_at_collection()) {
clear_has_age();
::org::phenopackets::schema::v1::core::Age* temp = age_.age_at_collection_;
age_.age_at_collection_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::Age& Individual::age_at_collection() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Individual.age_at_collection)
return has_age_at_collection()
? *age_.age_at_collection_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::Age*>(&::org::phenopackets::schema::v1::core::_Age_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::Age* Individual::mutable_age_at_collection() {
if (!has_age_at_collection()) {
clear_age();
set_has_age_at_collection();
age_.age_at_collection_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::Age >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Individual.age_at_collection)
return age_.age_at_collection_;
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_at_collection = 5;
inline bool Individual::has_age_range_at_collection() const {
return age_case() == kAgeRangeAtCollection;
}
inline void Individual::set_has_age_range_at_collection() {
_oneof_case_[0] = kAgeRangeAtCollection;
}
inline void Individual::clear_age_range_at_collection() {
if (has_age_range_at_collection()) {
delete age_.age_range_at_collection_;
clear_has_age();
}
}
inline ::org::phenopackets::schema::v1::core::AgeRange* Individual::release_age_range_at_collection() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Individual.age_range_at_collection)
if (has_age_range_at_collection()) {
clear_has_age();
::org::phenopackets::schema::v1::core::AgeRange* temp = age_.age_range_at_collection_;
age_.age_range_at_collection_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::AgeRange& Individual::age_range_at_collection() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Individual.age_range_at_collection)
return has_age_range_at_collection()
? *age_.age_range_at_collection_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::AgeRange*>(&::org::phenopackets::schema::v1::core::_AgeRange_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::AgeRange* Individual::mutable_age_range_at_collection() {
if (!has_age_range_at_collection()) {
clear_age();
set_has_age_range_at_collection();
age_.age_range_at_collection_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::AgeRange >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Individual.age_range_at_collection)
return age_.age_range_at_collection_;
}
// .org.phenopackets.schema.v1.core.Sex sex = 6;
inline void Individual::clear_sex() {
sex_ = 0;
}
inline ::org::phenopackets::schema::v1::core::Sex Individual::sex() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Individual.sex)
return static_cast< ::org::phenopackets::schema::v1::core::Sex >(sex_);
}
inline void Individual::set_sex(::org::phenopackets::schema::v1::core::Sex value) {
sex_ = value;
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Individual.sex)
}
// .org.phenopackets.schema.v1.core.KaryotypicSex karyotypic_sex = 7;
inline void Individual::clear_karyotypic_sex() {
karyotypic_sex_ = 0;
}
inline ::org::phenopackets::schema::v1::core::KaryotypicSex Individual::karyotypic_sex() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Individual.karyotypic_sex)
return static_cast< ::org::phenopackets::schema::v1::core::KaryotypicSex >(karyotypic_sex_);
}
inline void Individual::set_karyotypic_sex(::org::phenopackets::schema::v1::core::KaryotypicSex value) {
karyotypic_sex_ = value;
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Individual.karyotypic_sex)
}
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 8;
inline bool Individual::has_taxonomy() const {
return this != internal_default_instance() && taxonomy_ != nullptr;
}
inline void Individual::clear_taxonomy() {
if (GetArenaNoVirtual() == nullptr && taxonomy_ != nullptr) {
delete taxonomy_;
}
taxonomy_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Individual::taxonomy() const {
const ::org::phenopackets::schema::v1::core::OntologyClass* p = taxonomy_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Individual.taxonomy)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Individual::release_taxonomy() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Individual.taxonomy)
::org::phenopackets::schema::v1::core::OntologyClass* temp = taxonomy_;
taxonomy_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Individual::mutable_taxonomy() {
if (taxonomy_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(GetArenaNoVirtual());
taxonomy_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Individual.taxonomy)
return taxonomy_;
}
inline void Individual::set_allocated_taxonomy(::org::phenopackets::schema::v1::core::OntologyClass* taxonomy) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete taxonomy_;
}
if (taxonomy) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
taxonomy = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, taxonomy, submessage_arena);
}
} else {
}
taxonomy_ = taxonomy;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Individual.taxonomy)
}
inline bool Individual::has_age() const {
return age_case() != AGE_NOT_SET;
}
inline void Individual::clear_has_age() {
_oneof_case_[0] = AGE_NOT_SET;
}
inline Individual::AgeCase Individual::age_case() const {
return Individual::AgeCase(_oneof_case_[0]);
}
// -------------------------------------------------------------------
// Biosample
// string id = 1;
inline void Biosample::clear_id() {
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Biosample::id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.id)
return id_.GetNoArena();
}
inline void Biosample::set_id(const std::string& value) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Biosample.id)
}
inline void Biosample::set_id(std::string&& value) {
id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Biosample.id)
}
inline void Biosample::set_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Biosample.id)
}
inline void Biosample::set_id(const char* value, size_t size) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Biosample.id)
}
inline std::string* Biosample::mutable_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.id)
return id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Biosample::release_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Biosample.id)
return id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Biosample::set_allocated_id(std::string* id) {
if (id != nullptr) {
} else {
}
id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Biosample.id)
}
// string individual_id = 2;
inline void Biosample::clear_individual_id() {
individual_id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Biosample::individual_id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.individual_id)
return individual_id_.GetNoArena();
}
inline void Biosample::set_individual_id(const std::string& value) {
individual_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Biosample.individual_id)
}
inline void Biosample::set_individual_id(std::string&& value) {
individual_id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Biosample.individual_id)
}
inline void Biosample::set_individual_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
individual_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Biosample.individual_id)
}
inline void Biosample::set_individual_id(const char* value, size_t size) {
individual_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Biosample.individual_id)
}
inline std::string* Biosample::mutable_individual_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.individual_id)
return individual_id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Biosample::release_individual_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Biosample.individual_id)
return individual_id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Biosample::set_allocated_individual_id(std::string* individual_id) {
if (individual_id != nullptr) {
} else {
}
individual_id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), individual_id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Biosample.individual_id)
}
// string description = 3;
inline void Biosample::clear_description() {
description_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Biosample::description() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.description)
return description_.GetNoArena();
}
inline void Biosample::set_description(const std::string& value) {
description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Biosample.description)
}
inline void Biosample::set_description(std::string&& value) {
description_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Biosample.description)
}
inline void Biosample::set_description(const char* value) {
GOOGLE_DCHECK(value != nullptr);
description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Biosample.description)
}
inline void Biosample::set_description(const char* value, size_t size) {
description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Biosample.description)
}
inline std::string* Biosample::mutable_description() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.description)
return description_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Biosample::release_description() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Biosample.description)
return description_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Biosample::set_allocated_description(std::string* description) {
if (description != nullptr) {
} else {
}
description_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), description);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Biosample.description)
}
// .org.phenopackets.schema.v1.core.OntologyClass sampled_tissue = 4;
inline bool Biosample::has_sampled_tissue() const {
return this != internal_default_instance() && sampled_tissue_ != nullptr;
}
inline void Biosample::clear_sampled_tissue() {
if (GetArenaNoVirtual() == nullptr && sampled_tissue_ != nullptr) {
delete sampled_tissue_;
}
sampled_tissue_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Biosample::sampled_tissue() const {
const ::org::phenopackets::schema::v1::core::OntologyClass* p = sampled_tissue_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.sampled_tissue)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Biosample::release_sampled_tissue() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Biosample.sampled_tissue)
::org::phenopackets::schema::v1::core::OntologyClass* temp = sampled_tissue_;
sampled_tissue_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Biosample::mutable_sampled_tissue() {
if (sampled_tissue_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(GetArenaNoVirtual());
sampled_tissue_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.sampled_tissue)
return sampled_tissue_;
}
inline void Biosample::set_allocated_sampled_tissue(::org::phenopackets::schema::v1::core::OntologyClass* sampled_tissue) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete sampled_tissue_;
}
if (sampled_tissue) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
sampled_tissue = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, sampled_tissue, submessage_arena);
}
} else {
}
sampled_tissue_ = sampled_tissue;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Biosample.sampled_tissue)
}
// repeated .org.phenopackets.schema.v1.core.PhenotypicFeature phenotypic_features = 5;
inline int Biosample::phenotypic_features_size() const {
return phenotypic_features_.size();
}
inline void Biosample::clear_phenotypic_features() {
phenotypic_features_.Clear();
}
inline ::org::phenopackets::schema::v1::core::PhenotypicFeature* Biosample::mutable_phenotypic_features(int index) {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.phenotypic_features)
return phenotypic_features_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::PhenotypicFeature >*
Biosample::mutable_phenotypic_features() {
// @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.core.Biosample.phenotypic_features)
return &phenotypic_features_;
}
inline const ::org::phenopackets::schema::v1::core::PhenotypicFeature& Biosample::phenotypic_features(int index) const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.phenotypic_features)
return phenotypic_features_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::PhenotypicFeature* Biosample::add_phenotypic_features() {
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.Biosample.phenotypic_features)
return phenotypic_features_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::PhenotypicFeature >&
Biosample::phenotypic_features() const {
// @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.core.Biosample.phenotypic_features)
return phenotypic_features_;
}
// .org.phenopackets.schema.v1.core.OntologyClass taxonomy = 6;
inline bool Biosample::has_taxonomy() const {
return this != internal_default_instance() && taxonomy_ != nullptr;
}
inline void Biosample::clear_taxonomy() {
if (GetArenaNoVirtual() == nullptr && taxonomy_ != nullptr) {
delete taxonomy_;
}
taxonomy_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Biosample::taxonomy() const {
const ::org::phenopackets::schema::v1::core::OntologyClass* p = taxonomy_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.taxonomy)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Biosample::release_taxonomy() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Biosample.taxonomy)
::org::phenopackets::schema::v1::core::OntologyClass* temp = taxonomy_;
taxonomy_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Biosample::mutable_taxonomy() {
if (taxonomy_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(GetArenaNoVirtual());
taxonomy_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.taxonomy)
return taxonomy_;
}
inline void Biosample::set_allocated_taxonomy(::org::phenopackets::schema::v1::core::OntologyClass* taxonomy) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete taxonomy_;
}
if (taxonomy) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
taxonomy = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, taxonomy, submessage_arena);
}
} else {
}
taxonomy_ = taxonomy;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Biosample.taxonomy)
}
// .org.phenopackets.schema.v1.core.Age age_of_individual_at_collection = 7;
inline bool Biosample::has_age_of_individual_at_collection() const {
return individual_age_at_collection_case() == kAgeOfIndividualAtCollection;
}
inline void Biosample::set_has_age_of_individual_at_collection() {
_oneof_case_[0] = kAgeOfIndividualAtCollection;
}
inline void Biosample::clear_age_of_individual_at_collection() {
if (has_age_of_individual_at_collection()) {
delete individual_age_at_collection_.age_of_individual_at_collection_;
clear_has_individual_age_at_collection();
}
}
inline ::org::phenopackets::schema::v1::core::Age* Biosample::release_age_of_individual_at_collection() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Biosample.age_of_individual_at_collection)
if (has_age_of_individual_at_collection()) {
clear_has_individual_age_at_collection();
::org::phenopackets::schema::v1::core::Age* temp = individual_age_at_collection_.age_of_individual_at_collection_;
individual_age_at_collection_.age_of_individual_at_collection_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::Age& Biosample::age_of_individual_at_collection() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.age_of_individual_at_collection)
return has_age_of_individual_at_collection()
? *individual_age_at_collection_.age_of_individual_at_collection_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::Age*>(&::org::phenopackets::schema::v1::core::_Age_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::Age* Biosample::mutable_age_of_individual_at_collection() {
if (!has_age_of_individual_at_collection()) {
clear_individual_age_at_collection();
set_has_age_of_individual_at_collection();
individual_age_at_collection_.age_of_individual_at_collection_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::Age >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.age_of_individual_at_collection)
return individual_age_at_collection_.age_of_individual_at_collection_;
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_individual_at_collection = 8;
inline bool Biosample::has_age_range_of_individual_at_collection() const {
return individual_age_at_collection_case() == kAgeRangeOfIndividualAtCollection;
}
inline void Biosample::set_has_age_range_of_individual_at_collection() {
_oneof_case_[0] = kAgeRangeOfIndividualAtCollection;
}
inline void Biosample::clear_age_range_of_individual_at_collection() {
if (has_age_range_of_individual_at_collection()) {
delete individual_age_at_collection_.age_range_of_individual_at_collection_;
clear_has_individual_age_at_collection();
}
}
inline ::org::phenopackets::schema::v1::core::AgeRange* Biosample::release_age_range_of_individual_at_collection() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Biosample.age_range_of_individual_at_collection)
if (has_age_range_of_individual_at_collection()) {
clear_has_individual_age_at_collection();
::org::phenopackets::schema::v1::core::AgeRange* temp = individual_age_at_collection_.age_range_of_individual_at_collection_;
individual_age_at_collection_.age_range_of_individual_at_collection_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::AgeRange& Biosample::age_range_of_individual_at_collection() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.age_range_of_individual_at_collection)
return has_age_range_of_individual_at_collection()
? *individual_age_at_collection_.age_range_of_individual_at_collection_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::AgeRange*>(&::org::phenopackets::schema::v1::core::_AgeRange_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::AgeRange* Biosample::mutable_age_range_of_individual_at_collection() {
if (!has_age_range_of_individual_at_collection()) {
clear_individual_age_at_collection();
set_has_age_range_of_individual_at_collection();
individual_age_at_collection_.age_range_of_individual_at_collection_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::AgeRange >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.age_range_of_individual_at_collection)
return individual_age_at_collection_.age_range_of_individual_at_collection_;
}
// .org.phenopackets.schema.v1.core.OntologyClass histological_diagnosis = 9;
inline bool Biosample::has_histological_diagnosis() const {
return this != internal_default_instance() && histological_diagnosis_ != nullptr;
}
inline void Biosample::clear_histological_diagnosis() {
if (GetArenaNoVirtual() == nullptr && histological_diagnosis_ != nullptr) {
delete histological_diagnosis_;
}
histological_diagnosis_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Biosample::histological_diagnosis() const {
const ::org::phenopackets::schema::v1::core::OntologyClass* p = histological_diagnosis_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.histological_diagnosis)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Biosample::release_histological_diagnosis() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Biosample.histological_diagnosis)
::org::phenopackets::schema::v1::core::OntologyClass* temp = histological_diagnosis_;
histological_diagnosis_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Biosample::mutable_histological_diagnosis() {
if (histological_diagnosis_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(GetArenaNoVirtual());
histological_diagnosis_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.histological_diagnosis)
return histological_diagnosis_;
}
inline void Biosample::set_allocated_histological_diagnosis(::org::phenopackets::schema::v1::core::OntologyClass* histological_diagnosis) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete histological_diagnosis_;
}
if (histological_diagnosis) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
histological_diagnosis = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, histological_diagnosis, submessage_arena);
}
} else {
}
histological_diagnosis_ = histological_diagnosis;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Biosample.histological_diagnosis)
}
// .org.phenopackets.schema.v1.core.OntologyClass tumor_progression = 10;
inline bool Biosample::has_tumor_progression() const {
return this != internal_default_instance() && tumor_progression_ != nullptr;
}
inline void Biosample::clear_tumor_progression() {
if (GetArenaNoVirtual() == nullptr && tumor_progression_ != nullptr) {
delete tumor_progression_;
}
tumor_progression_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Biosample::tumor_progression() const {
const ::org::phenopackets::schema::v1::core::OntologyClass* p = tumor_progression_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.tumor_progression)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Biosample::release_tumor_progression() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Biosample.tumor_progression)
::org::phenopackets::schema::v1::core::OntologyClass* temp = tumor_progression_;
tumor_progression_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Biosample::mutable_tumor_progression() {
if (tumor_progression_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(GetArenaNoVirtual());
tumor_progression_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.tumor_progression)
return tumor_progression_;
}
inline void Biosample::set_allocated_tumor_progression(::org::phenopackets::schema::v1::core::OntologyClass* tumor_progression) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete tumor_progression_;
}
if (tumor_progression) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
tumor_progression = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, tumor_progression, submessage_arena);
}
} else {
}
tumor_progression_ = tumor_progression;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Biosample.tumor_progression)
}
// .org.phenopackets.schema.v1.core.OntologyClass tumor_grade = 11;
inline bool Biosample::has_tumor_grade() const {
return this != internal_default_instance() && tumor_grade_ != nullptr;
}
inline void Biosample::clear_tumor_grade() {
if (GetArenaNoVirtual() == nullptr && tumor_grade_ != nullptr) {
delete tumor_grade_;
}
tumor_grade_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Biosample::tumor_grade() const {
const ::org::phenopackets::schema::v1::core::OntologyClass* p = tumor_grade_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.tumor_grade)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Biosample::release_tumor_grade() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Biosample.tumor_grade)
::org::phenopackets::schema::v1::core::OntologyClass* temp = tumor_grade_;
tumor_grade_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Biosample::mutable_tumor_grade() {
if (tumor_grade_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(GetArenaNoVirtual());
tumor_grade_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.tumor_grade)
return tumor_grade_;
}
inline void Biosample::set_allocated_tumor_grade(::org::phenopackets::schema::v1::core::OntologyClass* tumor_grade) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete tumor_grade_;
}
if (tumor_grade) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
tumor_grade = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, tumor_grade, submessage_arena);
}
} else {
}
tumor_grade_ = tumor_grade;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Biosample.tumor_grade)
}
// repeated .org.phenopackets.schema.v1.core.OntologyClass diagnostic_markers = 12;
inline int Biosample::diagnostic_markers_size() const {
return diagnostic_markers_.size();
}
inline void Biosample::clear_diagnostic_markers() {
diagnostic_markers_.Clear();
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Biosample::mutable_diagnostic_markers(int index) {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.diagnostic_markers)
return diagnostic_markers_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass >*
Biosample::mutable_diagnostic_markers() {
// @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.core.Biosample.diagnostic_markers)
return &diagnostic_markers_;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Biosample::diagnostic_markers(int index) const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.diagnostic_markers)
return diagnostic_markers_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Biosample::add_diagnostic_markers() {
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.Biosample.diagnostic_markers)
return diagnostic_markers_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass >&
Biosample::diagnostic_markers() const {
// @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.core.Biosample.diagnostic_markers)
return diagnostic_markers_;
}
// .org.phenopackets.schema.v1.core.Procedure procedure = 13;
inline bool Biosample::has_procedure() const {
return this != internal_default_instance() && procedure_ != nullptr;
}
inline void Biosample::clear_procedure() {
if (GetArenaNoVirtual() == nullptr && procedure_ != nullptr) {
delete procedure_;
}
procedure_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::Procedure& Biosample::procedure() const {
const ::org::phenopackets::schema::v1::core::Procedure* p = procedure_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.procedure)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_Procedure_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::Procedure* Biosample::release_procedure() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Biosample.procedure)
::org::phenopackets::schema::v1::core::Procedure* temp = procedure_;
procedure_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::Procedure* Biosample::mutable_procedure() {
if (procedure_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::Procedure>(GetArenaNoVirtual());
procedure_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.procedure)
return procedure_;
}
inline void Biosample::set_allocated_procedure(::org::phenopackets::schema::v1::core::Procedure* procedure) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete procedure_;
}
if (procedure) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
procedure = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, procedure, submessage_arena);
}
} else {
}
procedure_ = procedure;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Biosample.procedure)
}
// repeated .org.phenopackets.schema.v1.core.HtsFile hts_files = 14;
inline int Biosample::hts_files_size() const {
return hts_files_.size();
}
inline void Biosample::clear_hts_files() {
hts_files_.Clear();
}
inline ::org::phenopackets::schema::v1::core::HtsFile* Biosample::mutable_hts_files(int index) {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.hts_files)
return hts_files_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >*
Biosample::mutable_hts_files() {
// @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.core.Biosample.hts_files)
return &hts_files_;
}
inline const ::org::phenopackets::schema::v1::core::HtsFile& Biosample::hts_files(int index) const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.hts_files)
return hts_files_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::HtsFile* Biosample::add_hts_files() {
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.Biosample.hts_files)
return hts_files_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >&
Biosample::hts_files() const {
// @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.core.Biosample.hts_files)
return hts_files_;
}
// repeated .org.phenopackets.schema.v1.core.Variant variants = 15;
inline int Biosample::variants_size() const {
return variants_.size();
}
inline void Biosample::clear_variants() {
variants_.Clear();
}
inline ::org::phenopackets::schema::v1::core::Variant* Biosample::mutable_variants(int index) {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Biosample.variants)
return variants_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Variant >*
Biosample::mutable_variants() {
// @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.core.Biosample.variants)
return &variants_;
}
inline const ::org::phenopackets::schema::v1::core::Variant& Biosample::variants(int index) const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.variants)
return variants_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::Variant* Biosample::add_variants() {
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.Biosample.variants)
return variants_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Variant >&
Biosample::variants() const {
// @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.core.Biosample.variants)
return variants_;
}
// bool is_control_sample = 16;
inline void Biosample::clear_is_control_sample() {
is_control_sample_ = false;
}
inline bool Biosample::is_control_sample() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Biosample.is_control_sample)
return is_control_sample_;
}
inline void Biosample::set_is_control_sample(bool value) {
is_control_sample_ = value;
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Biosample.is_control_sample)
}
inline bool Biosample::has_individual_age_at_collection() const {
return individual_age_at_collection_case() != INDIVIDUAL_AGE_AT_COLLECTION_NOT_SET;
}
inline void Biosample::clear_has_individual_age_at_collection() {
_oneof_case_[0] = INDIVIDUAL_AGE_AT_COLLECTION_NOT_SET;
}
inline Biosample::IndividualAgeAtCollectionCase Biosample::individual_age_at_collection_case() const {
return Biosample::IndividualAgeAtCollectionCase(_oneof_case_[0]);
}
// -------------------------------------------------------------------
// Procedure
// .org.phenopackets.schema.v1.core.OntologyClass code = 1;
inline bool Procedure::has_code() const {
return this != internal_default_instance() && code_ != nullptr;
}
inline void Procedure::clear_code() {
if (GetArenaNoVirtual() == nullptr && code_ != nullptr) {
delete code_;
}
code_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Procedure::code() const {
const ::org::phenopackets::schema::v1::core::OntologyClass* p = code_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Procedure.code)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Procedure::release_code() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Procedure.code)
::org::phenopackets::schema::v1::core::OntologyClass* temp = code_;
code_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Procedure::mutable_code() {
if (code_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(GetArenaNoVirtual());
code_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Procedure.code)
return code_;
}
inline void Procedure::set_allocated_code(::org::phenopackets::schema::v1::core::OntologyClass* code) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete code_;
}
if (code) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
code = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, code, submessage_arena);
}
} else {
}
code_ = code;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Procedure.code)
}
// .org.phenopackets.schema.v1.core.OntologyClass body_site = 2;
inline bool Procedure::has_body_site() const {
return this != internal_default_instance() && body_site_ != nullptr;
}
inline void Procedure::clear_body_site() {
if (GetArenaNoVirtual() == nullptr && body_site_ != nullptr) {
delete body_site_;
}
body_site_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Procedure::body_site() const {
const ::org::phenopackets::schema::v1::core::OntologyClass* p = body_site_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Procedure.body_site)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Procedure::release_body_site() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Procedure.body_site)
::org::phenopackets::schema::v1::core::OntologyClass* temp = body_site_;
body_site_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Procedure::mutable_body_site() {
if (body_site_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(GetArenaNoVirtual());
body_site_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Procedure.body_site)
return body_site_;
}
inline void Procedure::set_allocated_body_site(::org::phenopackets::schema::v1::core::OntologyClass* body_site) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete body_site_;
}
if (body_site) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
body_site = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, body_site, submessage_arena);
}
} else {
}
body_site_ = body_site;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Procedure.body_site)
}
// -------------------------------------------------------------------
// Age
// string age = 1;
inline void Age::clear_age() {
age_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Age::age() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Age.age)
return age_.GetNoArena();
}
inline void Age::set_age(const std::string& value) {
age_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Age.age)
}
inline void Age::set_age(std::string&& value) {
age_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Age.age)
}
inline void Age::set_age(const char* value) {
GOOGLE_DCHECK(value != nullptr);
age_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Age.age)
}
inline void Age::set_age(const char* value, size_t size) {
age_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Age.age)
}
inline std::string* Age::mutable_age() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Age.age)
return age_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Age::release_age() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Age.age)
return age_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Age::set_allocated_age(std::string* age) {
if (age != nullptr) {
} else {
}
age_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), age);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Age.age)
}
// -------------------------------------------------------------------
// AgeRange
// .org.phenopackets.schema.v1.core.Age start = 1;
inline bool AgeRange::has_start() const {
return this != internal_default_instance() && start_ != nullptr;
}
inline void AgeRange::clear_start() {
if (GetArenaNoVirtual() == nullptr && start_ != nullptr) {
delete start_;
}
start_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::Age& AgeRange::start() const {
const ::org::phenopackets::schema::v1::core::Age* p = start_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.AgeRange.start)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_Age_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::Age* AgeRange::release_start() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.AgeRange.start)
::org::phenopackets::schema::v1::core::Age* temp = start_;
start_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::Age* AgeRange::mutable_start() {
if (start_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::Age>(GetArenaNoVirtual());
start_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.AgeRange.start)
return start_;
}
inline void AgeRange::set_allocated_start(::org::phenopackets::schema::v1::core::Age* start) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete start_;
}
if (start) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
start = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, start, submessage_arena);
}
} else {
}
start_ = start;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.AgeRange.start)
}
// .org.phenopackets.schema.v1.core.Age end = 2;
inline bool AgeRange::has_end() const {
return this != internal_default_instance() && end_ != nullptr;
}
inline void AgeRange::clear_end() {
if (GetArenaNoVirtual() == nullptr && end_ != nullptr) {
delete end_;
}
end_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::Age& AgeRange::end() const {
const ::org::phenopackets::schema::v1::core::Age* p = end_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.AgeRange.end)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_Age_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::Age* AgeRange::release_end() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.AgeRange.end)
::org::phenopackets::schema::v1::core::Age* temp = end_;
end_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::Age* AgeRange::mutable_end() {
if (end_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::Age>(GetArenaNoVirtual());
end_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.AgeRange.end)
return end_;
}
inline void AgeRange::set_allocated_end(::org::phenopackets::schema::v1::core::Age* end) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete end_;
}
if (end) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
end = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, end, submessage_arena);
}
} else {
}
end_ = end;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.AgeRange.end)
}
// -------------------------------------------------------------------
// Disease
// .org.phenopackets.schema.v1.core.OntologyClass term = 1;
inline bool Disease::has_term() const {
return this != internal_default_instance() && term_ != nullptr;
}
inline void Disease::clear_term() {
if (GetArenaNoVirtual() == nullptr && term_ != nullptr) {
delete term_;
}
term_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Disease::term() const {
const ::org::phenopackets::schema::v1::core::OntologyClass* p = term_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Disease.term)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Disease::release_term() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Disease.term)
::org::phenopackets::schema::v1::core::OntologyClass* temp = term_;
term_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Disease::mutable_term() {
if (term_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(GetArenaNoVirtual());
term_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Disease.term)
return term_;
}
inline void Disease::set_allocated_term(::org::phenopackets::schema::v1::core::OntologyClass* term) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete term_;
}
if (term) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
term = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, term, submessage_arena);
}
} else {
}
term_ = term;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Disease.term)
}
// .org.phenopackets.schema.v1.core.Age age_of_onset = 2;
inline bool Disease::has_age_of_onset() const {
return onset_case() == kAgeOfOnset;
}
inline void Disease::set_has_age_of_onset() {
_oneof_case_[0] = kAgeOfOnset;
}
inline void Disease::clear_age_of_onset() {
if (has_age_of_onset()) {
delete onset_.age_of_onset_;
clear_has_onset();
}
}
inline ::org::phenopackets::schema::v1::core::Age* Disease::release_age_of_onset() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Disease.age_of_onset)
if (has_age_of_onset()) {
clear_has_onset();
::org::phenopackets::schema::v1::core::Age* temp = onset_.age_of_onset_;
onset_.age_of_onset_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::Age& Disease::age_of_onset() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Disease.age_of_onset)
return has_age_of_onset()
? *onset_.age_of_onset_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::Age*>(&::org::phenopackets::schema::v1::core::_Age_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::Age* Disease::mutable_age_of_onset() {
if (!has_age_of_onset()) {
clear_onset();
set_has_age_of_onset();
onset_.age_of_onset_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::Age >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Disease.age_of_onset)
return onset_.age_of_onset_;
}
// .org.phenopackets.schema.v1.core.AgeRange age_range_of_onset = 3;
inline bool Disease::has_age_range_of_onset() const {
return onset_case() == kAgeRangeOfOnset;
}
inline void Disease::set_has_age_range_of_onset() {
_oneof_case_[0] = kAgeRangeOfOnset;
}
inline void Disease::clear_age_range_of_onset() {
if (has_age_range_of_onset()) {
delete onset_.age_range_of_onset_;
clear_has_onset();
}
}
inline ::org::phenopackets::schema::v1::core::AgeRange* Disease::release_age_range_of_onset() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Disease.age_range_of_onset)
if (has_age_range_of_onset()) {
clear_has_onset();
::org::phenopackets::schema::v1::core::AgeRange* temp = onset_.age_range_of_onset_;
onset_.age_range_of_onset_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::AgeRange& Disease::age_range_of_onset() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Disease.age_range_of_onset)
return has_age_range_of_onset()
? *onset_.age_range_of_onset_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::AgeRange*>(&::org::phenopackets::schema::v1::core::_AgeRange_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::AgeRange* Disease::mutable_age_range_of_onset() {
if (!has_age_range_of_onset()) {
clear_onset();
set_has_age_range_of_onset();
onset_.age_range_of_onset_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::AgeRange >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Disease.age_range_of_onset)
return onset_.age_range_of_onset_;
}
// .org.phenopackets.schema.v1.core.OntologyClass class_of_onset = 4;
inline bool Disease::has_class_of_onset() const {
return onset_case() == kClassOfOnset;
}
inline void Disease::set_has_class_of_onset() {
_oneof_case_[0] = kClassOfOnset;
}
inline void Disease::clear_class_of_onset() {
if (has_class_of_onset()) {
delete onset_.class_of_onset_;
clear_has_onset();
}
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Disease::release_class_of_onset() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Disease.class_of_onset)
if (has_class_of_onset()) {
clear_has_onset();
::org::phenopackets::schema::v1::core::OntologyClass* temp = onset_.class_of_onset_;
onset_.class_of_onset_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Disease::class_of_onset() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Disease.class_of_onset)
return has_class_of_onset()
? *onset_.class_of_onset_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::OntologyClass*>(&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Disease::mutable_class_of_onset() {
if (!has_class_of_onset()) {
clear_onset();
set_has_class_of_onset();
onset_.class_of_onset_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::OntologyClass >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Disease.class_of_onset)
return onset_.class_of_onset_;
}
// repeated .org.phenopackets.schema.v1.core.OntologyClass tumor_stage = 5;
inline int Disease::tumor_stage_size() const {
return tumor_stage_.size();
}
inline void Disease::clear_tumor_stage() {
tumor_stage_.Clear();
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Disease::mutable_tumor_stage(int index) {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Disease.tumor_stage)
return tumor_stage_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass >*
Disease::mutable_tumor_stage() {
// @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.core.Disease.tumor_stage)
return &tumor_stage_;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Disease::tumor_stage(int index) const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Disease.tumor_stage)
return tumor_stage_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Disease::add_tumor_stage() {
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.Disease.tumor_stage)
return tumor_stage_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::OntologyClass >&
Disease::tumor_stage() const {
// @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.core.Disease.tumor_stage)
return tumor_stage_;
}
inline bool Disease::has_onset() const {
return onset_case() != ONSET_NOT_SET;
}
inline void Disease::clear_has_onset() {
_oneof_case_[0] = ONSET_NOT_SET;
}
inline Disease::OnsetCase Disease::onset_case() const {
return Disease::OnsetCase(_oneof_case_[0]);
}
// -------------------------------------------------------------------
// Pedigree_Person
// string family_id = 1;
inline void Pedigree_Person::clear_family_id() {
family_id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Pedigree_Person::family_id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Pedigree.Person.family_id)
return family_id_.GetNoArena();
}
inline void Pedigree_Person::set_family_id(const std::string& value) {
family_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Pedigree.Person.family_id)
}
inline void Pedigree_Person::set_family_id(std::string&& value) {
family_id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Pedigree.Person.family_id)
}
inline void Pedigree_Person::set_family_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
family_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Pedigree.Person.family_id)
}
inline void Pedigree_Person::set_family_id(const char* value, size_t size) {
family_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Pedigree.Person.family_id)
}
inline std::string* Pedigree_Person::mutable_family_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Pedigree.Person.family_id)
return family_id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Pedigree_Person::release_family_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Pedigree.Person.family_id)
return family_id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Pedigree_Person::set_allocated_family_id(std::string* family_id) {
if (family_id != nullptr) {
} else {
}
family_id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), family_id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Pedigree.Person.family_id)
}
// string individual_id = 2;
inline void Pedigree_Person::clear_individual_id() {
individual_id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Pedigree_Person::individual_id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Pedigree.Person.individual_id)
return individual_id_.GetNoArena();
}
inline void Pedigree_Person::set_individual_id(const std::string& value) {
individual_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Pedigree.Person.individual_id)
}
inline void Pedigree_Person::set_individual_id(std::string&& value) {
individual_id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Pedigree.Person.individual_id)
}
inline void Pedigree_Person::set_individual_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
individual_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Pedigree.Person.individual_id)
}
inline void Pedigree_Person::set_individual_id(const char* value, size_t size) {
individual_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Pedigree.Person.individual_id)
}
inline std::string* Pedigree_Person::mutable_individual_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Pedigree.Person.individual_id)
return individual_id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Pedigree_Person::release_individual_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Pedigree.Person.individual_id)
return individual_id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Pedigree_Person::set_allocated_individual_id(std::string* individual_id) {
if (individual_id != nullptr) {
} else {
}
individual_id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), individual_id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Pedigree.Person.individual_id)
}
// string paternal_id = 3;
inline void Pedigree_Person::clear_paternal_id() {
paternal_id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Pedigree_Person::paternal_id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Pedigree.Person.paternal_id)
return paternal_id_.GetNoArena();
}
inline void Pedigree_Person::set_paternal_id(const std::string& value) {
paternal_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Pedigree.Person.paternal_id)
}
inline void Pedigree_Person::set_paternal_id(std::string&& value) {
paternal_id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Pedigree.Person.paternal_id)
}
inline void Pedigree_Person::set_paternal_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
paternal_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Pedigree.Person.paternal_id)
}
inline void Pedigree_Person::set_paternal_id(const char* value, size_t size) {
paternal_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Pedigree.Person.paternal_id)
}
inline std::string* Pedigree_Person::mutable_paternal_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Pedigree.Person.paternal_id)
return paternal_id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Pedigree_Person::release_paternal_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Pedigree.Person.paternal_id)
return paternal_id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Pedigree_Person::set_allocated_paternal_id(std::string* paternal_id) {
if (paternal_id != nullptr) {
} else {
}
paternal_id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), paternal_id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Pedigree.Person.paternal_id)
}
// string maternal_id = 4;
inline void Pedigree_Person::clear_maternal_id() {
maternal_id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Pedigree_Person::maternal_id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Pedigree.Person.maternal_id)
return maternal_id_.GetNoArena();
}
inline void Pedigree_Person::set_maternal_id(const std::string& value) {
maternal_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Pedigree.Person.maternal_id)
}
inline void Pedigree_Person::set_maternal_id(std::string&& value) {
maternal_id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Pedigree.Person.maternal_id)
}
inline void Pedigree_Person::set_maternal_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
maternal_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Pedigree.Person.maternal_id)
}
inline void Pedigree_Person::set_maternal_id(const char* value, size_t size) {
maternal_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Pedigree.Person.maternal_id)
}
inline std::string* Pedigree_Person::mutable_maternal_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Pedigree.Person.maternal_id)
return maternal_id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Pedigree_Person::release_maternal_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Pedigree.Person.maternal_id)
return maternal_id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Pedigree_Person::set_allocated_maternal_id(std::string* maternal_id) {
if (maternal_id != nullptr) {
} else {
}
maternal_id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), maternal_id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Pedigree.Person.maternal_id)
}
// .org.phenopackets.schema.v1.core.Sex sex = 5;
inline void Pedigree_Person::clear_sex() {
sex_ = 0;
}
inline ::org::phenopackets::schema::v1::core::Sex Pedigree_Person::sex() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Pedigree.Person.sex)
return static_cast< ::org::phenopackets::schema::v1::core::Sex >(sex_);
}
inline void Pedigree_Person::set_sex(::org::phenopackets::schema::v1::core::Sex value) {
sex_ = value;
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Pedigree.Person.sex)
}
// .org.phenopackets.schema.v1.core.Pedigree.Person.AffectedStatus affected_status = 6;
inline void Pedigree_Person::clear_affected_status() {
affected_status_ = 0;
}
inline ::org::phenopackets::schema::v1::core::Pedigree_Person_AffectedStatus Pedigree_Person::affected_status() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Pedigree.Person.affected_status)
return static_cast< ::org::phenopackets::schema::v1::core::Pedigree_Person_AffectedStatus >(affected_status_);
}
inline void Pedigree_Person::set_affected_status(::org::phenopackets::schema::v1::core::Pedigree_Person_AffectedStatus value) {
affected_status_ = value;
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Pedigree.Person.affected_status)
}
// -------------------------------------------------------------------
// Pedigree
// repeated .org.phenopackets.schema.v1.core.Pedigree.Person persons = 1;
inline int Pedigree::persons_size() const {
return persons_.size();
}
inline void Pedigree::clear_persons() {
persons_.Clear();
}
inline ::org::phenopackets::schema::v1::core::Pedigree_Person* Pedigree::mutable_persons(int index) {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Pedigree.persons)
return persons_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Pedigree_Person >*
Pedigree::mutable_persons() {
// @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.core.Pedigree.persons)
return &persons_;
}
inline const ::org::phenopackets::schema::v1::core::Pedigree_Person& Pedigree::persons(int index) const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Pedigree.persons)
return persons_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::Pedigree_Person* Pedigree::add_persons() {
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.Pedigree.persons)
return persons_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Pedigree_Person >&
Pedigree::persons() const {
// @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.core.Pedigree.persons)
return persons_;
}
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// HtsFile
// string uri = 1;
inline void HtsFile::clear_uri() {
uri_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& HtsFile::uri() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.HtsFile.uri)
return uri_.GetNoArena();
}
inline void HtsFile::set_uri(const std::string& value) {
uri_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.HtsFile.uri)
}
inline void HtsFile::set_uri(std::string&& value) {
uri_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.HtsFile.uri)
}
inline void HtsFile::set_uri(const char* value) {
GOOGLE_DCHECK(value != nullptr);
uri_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.HtsFile.uri)
}
inline void HtsFile::set_uri(const char* value, size_t size) {
uri_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.HtsFile.uri)
}
inline std::string* HtsFile::mutable_uri() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.HtsFile.uri)
return uri_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* HtsFile::release_uri() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.HtsFile.uri)
return uri_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void HtsFile::set_allocated_uri(std::string* uri) {
if (uri != nullptr) {
} else {
}
uri_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), uri);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.HtsFile.uri)
}
// string description = 2;
inline void HtsFile::clear_description() {
description_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& HtsFile::description() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.HtsFile.description)
return description_.GetNoArena();
}
inline void HtsFile::set_description(const std::string& value) {
description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.HtsFile.description)
}
inline void HtsFile::set_description(std::string&& value) {
description_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.HtsFile.description)
}
inline void HtsFile::set_description(const char* value) {
GOOGLE_DCHECK(value != nullptr);
description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.HtsFile.description)
}
inline void HtsFile::set_description(const char* value, size_t size) {
description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.HtsFile.description)
}
inline std::string* HtsFile::mutable_description() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.HtsFile.description)
return description_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* HtsFile::release_description() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.HtsFile.description)
return description_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void HtsFile::set_allocated_description(std::string* description) {
if (description != nullptr) {
} else {
}
description_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), description);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.HtsFile.description)
}
// .org.phenopackets.schema.v1.core.HtsFile.HtsFormat hts_format = 3;
inline void HtsFile::clear_hts_format() {
hts_format_ = 0;
}
inline ::org::phenopackets::schema::v1::core::HtsFile_HtsFormat HtsFile::hts_format() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.HtsFile.hts_format)
return static_cast< ::org::phenopackets::schema::v1::core::HtsFile_HtsFormat >(hts_format_);
}
inline void HtsFile::set_hts_format(::org::phenopackets::schema::v1::core::HtsFile_HtsFormat value) {
hts_format_ = value;
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.HtsFile.hts_format)
}
// string genome_assembly = 4;
inline void HtsFile::clear_genome_assembly() {
genome_assembly_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& HtsFile::genome_assembly() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.HtsFile.genome_assembly)
return genome_assembly_.GetNoArena();
}
inline void HtsFile::set_genome_assembly(const std::string& value) {
genome_assembly_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.HtsFile.genome_assembly)
}
inline void HtsFile::set_genome_assembly(std::string&& value) {
genome_assembly_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.HtsFile.genome_assembly)
}
inline void HtsFile::set_genome_assembly(const char* value) {
GOOGLE_DCHECK(value != nullptr);
genome_assembly_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.HtsFile.genome_assembly)
}
inline void HtsFile::set_genome_assembly(const char* value, size_t size) {
genome_assembly_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.HtsFile.genome_assembly)
}
inline std::string* HtsFile::mutable_genome_assembly() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.HtsFile.genome_assembly)
return genome_assembly_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* HtsFile::release_genome_assembly() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.HtsFile.genome_assembly)
return genome_assembly_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void HtsFile::set_allocated_genome_assembly(std::string* genome_assembly) {
if (genome_assembly != nullptr) {
} else {
}
genome_assembly_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), genome_assembly);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.HtsFile.genome_assembly)
}
// map individual_to_sample_identifiers = 5;
inline int HtsFile::individual_to_sample_identifiers_size() const {
return individual_to_sample_identifiers_.size();
}
inline void HtsFile::clear_individual_to_sample_identifiers() {
individual_to_sample_identifiers_.Clear();
}
inline const ::PROTOBUF_NAMESPACE_ID::Map< std::string, std::string >&
HtsFile::individual_to_sample_identifiers() const {
// @@protoc_insertion_point(field_map:org.phenopackets.schema.v1.core.HtsFile.individual_to_sample_identifiers)
return individual_to_sample_identifiers_.GetMap();
}
inline ::PROTOBUF_NAMESPACE_ID::Map< std::string, std::string >*
HtsFile::mutable_individual_to_sample_identifiers() {
// @@protoc_insertion_point(field_mutable_map:org.phenopackets.schema.v1.core.HtsFile.individual_to_sample_identifiers)
return individual_to_sample_identifiers_.MutableMap();
}
// -------------------------------------------------------------------
// Gene
// string id = 1;
inline void Gene::clear_id() {
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Gene::id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Gene.id)
return id_.GetNoArena();
}
inline void Gene::set_id(const std::string& value) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Gene.id)
}
inline void Gene::set_id(std::string&& value) {
id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Gene.id)
}
inline void Gene::set_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Gene.id)
}
inline void Gene::set_id(const char* value, size_t size) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Gene.id)
}
inline std::string* Gene::mutable_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Gene.id)
return id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Gene::release_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Gene.id)
return id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Gene::set_allocated_id(std::string* id) {
if (id != nullptr) {
} else {
}
id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Gene.id)
}
// repeated string alternate_ids = 2;
inline int Gene::alternate_ids_size() const {
return alternate_ids_.size();
}
inline void Gene::clear_alternate_ids() {
alternate_ids_.Clear();
}
inline const std::string& Gene::alternate_ids(int index) const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Gene.alternate_ids)
return alternate_ids_.Get(index);
}
inline std::string* Gene::mutable_alternate_ids(int index) {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Gene.alternate_ids)
return alternate_ids_.Mutable(index);
}
inline void Gene::set_alternate_ids(int index, const std::string& value) {
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Gene.alternate_ids)
alternate_ids_.Mutable(index)->assign(value);
}
inline void Gene::set_alternate_ids(int index, std::string&& value) {
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Gene.alternate_ids)
alternate_ids_.Mutable(index)->assign(std::move(value));
}
inline void Gene::set_alternate_ids(int index, const char* value) {
GOOGLE_DCHECK(value != nullptr);
alternate_ids_.Mutable(index)->assign(value);
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Gene.alternate_ids)
}
inline void Gene::set_alternate_ids(int index, const char* value, size_t size) {
alternate_ids_.Mutable(index)->assign(
reinterpret_cast(value), size);
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Gene.alternate_ids)
}
inline std::string* Gene::add_alternate_ids() {
// @@protoc_insertion_point(field_add_mutable:org.phenopackets.schema.v1.core.Gene.alternate_ids)
return alternate_ids_.Add();
}
inline void Gene::add_alternate_ids(const std::string& value) {
alternate_ids_.Add()->assign(value);
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.Gene.alternate_ids)
}
inline void Gene::add_alternate_ids(std::string&& value) {
alternate_ids_.Add(std::move(value));
// @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.core.Gene.alternate_ids)
}
inline void Gene::add_alternate_ids(const char* value) {
GOOGLE_DCHECK(value != nullptr);
alternate_ids_.Add()->assign(value);
// @@protoc_insertion_point(field_add_char:org.phenopackets.schema.v1.core.Gene.alternate_ids)
}
inline void Gene::add_alternate_ids(const char* value, size_t size) {
alternate_ids_.Add()->assign(reinterpret_cast(value), size);
// @@protoc_insertion_point(field_add_pointer:org.phenopackets.schema.v1.core.Gene.alternate_ids)
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField&
Gene::alternate_ids() const {
// @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.core.Gene.alternate_ids)
return alternate_ids_;
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField*
Gene::mutable_alternate_ids() {
// @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.core.Gene.alternate_ids)
return &alternate_ids_;
}
// string symbol = 3;
inline void Gene::clear_symbol() {
symbol_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Gene::symbol() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Gene.symbol)
return symbol_.GetNoArena();
}
inline void Gene::set_symbol(const std::string& value) {
symbol_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.Gene.symbol)
}
inline void Gene::set_symbol(std::string&& value) {
symbol_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.Gene.symbol)
}
inline void Gene::set_symbol(const char* value) {
GOOGLE_DCHECK(value != nullptr);
symbol_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.Gene.symbol)
}
inline void Gene::set_symbol(const char* value, size_t size) {
symbol_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.Gene.symbol)
}
inline std::string* Gene::mutable_symbol() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Gene.symbol)
return symbol_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Gene::release_symbol() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Gene.symbol)
return symbol_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Gene::set_allocated_symbol(std::string* symbol) {
if (symbol != nullptr) {
} else {
}
symbol_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), symbol);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Gene.symbol)
}
// -------------------------------------------------------------------
// Variant
// .org.phenopackets.schema.v1.core.HgvsAllele hgvs_allele = 2;
inline bool Variant::has_hgvs_allele() const {
return allele_case() == kHgvsAllele;
}
inline void Variant::set_has_hgvs_allele() {
_oneof_case_[0] = kHgvsAllele;
}
inline void Variant::clear_hgvs_allele() {
if (has_hgvs_allele()) {
delete allele_.hgvs_allele_;
clear_has_allele();
}
}
inline ::org::phenopackets::schema::v1::core::HgvsAllele* Variant::release_hgvs_allele() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Variant.hgvs_allele)
if (has_hgvs_allele()) {
clear_has_allele();
::org::phenopackets::schema::v1::core::HgvsAllele* temp = allele_.hgvs_allele_;
allele_.hgvs_allele_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::HgvsAllele& Variant::hgvs_allele() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Variant.hgvs_allele)
return has_hgvs_allele()
? *allele_.hgvs_allele_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::HgvsAllele*>(&::org::phenopackets::schema::v1::core::_HgvsAllele_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::HgvsAllele* Variant::mutable_hgvs_allele() {
if (!has_hgvs_allele()) {
clear_allele();
set_has_hgvs_allele();
allele_.hgvs_allele_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::HgvsAllele >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Variant.hgvs_allele)
return allele_.hgvs_allele_;
}
// .org.phenopackets.schema.v1.core.VcfAllele vcf_allele = 3;
inline bool Variant::has_vcf_allele() const {
return allele_case() == kVcfAllele;
}
inline void Variant::set_has_vcf_allele() {
_oneof_case_[0] = kVcfAllele;
}
inline void Variant::clear_vcf_allele() {
if (has_vcf_allele()) {
delete allele_.vcf_allele_;
clear_has_allele();
}
}
inline ::org::phenopackets::schema::v1::core::VcfAllele* Variant::release_vcf_allele() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Variant.vcf_allele)
if (has_vcf_allele()) {
clear_has_allele();
::org::phenopackets::schema::v1::core::VcfAllele* temp = allele_.vcf_allele_;
allele_.vcf_allele_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::VcfAllele& Variant::vcf_allele() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Variant.vcf_allele)
return has_vcf_allele()
? *allele_.vcf_allele_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::VcfAllele*>(&::org::phenopackets::schema::v1::core::_VcfAllele_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::VcfAllele* Variant::mutable_vcf_allele() {
if (!has_vcf_allele()) {
clear_allele();
set_has_vcf_allele();
allele_.vcf_allele_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::VcfAllele >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Variant.vcf_allele)
return allele_.vcf_allele_;
}
// .org.phenopackets.schema.v1.core.SpdiAllele spdi_allele = 4;
inline bool Variant::has_spdi_allele() const {
return allele_case() == kSpdiAllele;
}
inline void Variant::set_has_spdi_allele() {
_oneof_case_[0] = kSpdiAllele;
}
inline void Variant::clear_spdi_allele() {
if (has_spdi_allele()) {
delete allele_.spdi_allele_;
clear_has_allele();
}
}
inline ::org::phenopackets::schema::v1::core::SpdiAllele* Variant::release_spdi_allele() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Variant.spdi_allele)
if (has_spdi_allele()) {
clear_has_allele();
::org::phenopackets::schema::v1::core::SpdiAllele* temp = allele_.spdi_allele_;
allele_.spdi_allele_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::SpdiAllele& Variant::spdi_allele() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Variant.spdi_allele)
return has_spdi_allele()
? *allele_.spdi_allele_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::SpdiAllele*>(&::org::phenopackets::schema::v1::core::_SpdiAllele_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::SpdiAllele* Variant::mutable_spdi_allele() {
if (!has_spdi_allele()) {
clear_allele();
set_has_spdi_allele();
allele_.spdi_allele_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::SpdiAllele >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Variant.spdi_allele)
return allele_.spdi_allele_;
}
// .org.phenopackets.schema.v1.core.IscnAllele iscn_allele = 5;
inline bool Variant::has_iscn_allele() const {
return allele_case() == kIscnAllele;
}
inline void Variant::set_has_iscn_allele() {
_oneof_case_[0] = kIscnAllele;
}
inline void Variant::clear_iscn_allele() {
if (has_iscn_allele()) {
delete allele_.iscn_allele_;
clear_has_allele();
}
}
inline ::org::phenopackets::schema::v1::core::IscnAllele* Variant::release_iscn_allele() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Variant.iscn_allele)
if (has_iscn_allele()) {
clear_has_allele();
::org::phenopackets::schema::v1::core::IscnAllele* temp = allele_.iscn_allele_;
allele_.iscn_allele_ = nullptr;
return temp;
} else {
return nullptr;
}
}
inline const ::org::phenopackets::schema::v1::core::IscnAllele& Variant::iscn_allele() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Variant.iscn_allele)
return has_iscn_allele()
? *allele_.iscn_allele_
: *reinterpret_cast< ::org::phenopackets::schema::v1::core::IscnAllele*>(&::org::phenopackets::schema::v1::core::_IscnAllele_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::IscnAllele* Variant::mutable_iscn_allele() {
if (!has_iscn_allele()) {
clear_allele();
set_has_iscn_allele();
allele_.iscn_allele_ = CreateMaybeMessage< ::org::phenopackets::schema::v1::core::IscnAllele >(
GetArenaNoVirtual());
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Variant.iscn_allele)
return allele_.iscn_allele_;
}
// .org.phenopackets.schema.v1.core.OntologyClass zygosity = 6;
inline bool Variant::has_zygosity() const {
return this != internal_default_instance() && zygosity_ != nullptr;
}
inline void Variant::clear_zygosity() {
if (GetArenaNoVirtual() == nullptr && zygosity_ != nullptr) {
delete zygosity_;
}
zygosity_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::core::OntologyClass& Variant::zygosity() const {
const ::org::phenopackets::schema::v1::core::OntologyClass* p = zygosity_;
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.Variant.zygosity)
return p != nullptr ? *p : *reinterpret_cast(
&::org::phenopackets::schema::v1::core::_OntologyClass_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Variant::release_zygosity() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.Variant.zygosity)
::org::phenopackets::schema::v1::core::OntologyClass* temp = zygosity_;
zygosity_ = nullptr;
return temp;
}
inline ::org::phenopackets::schema::v1::core::OntologyClass* Variant::mutable_zygosity() {
if (zygosity_ == nullptr) {
auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::OntologyClass>(GetArenaNoVirtual());
zygosity_ = p;
}
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.Variant.zygosity)
return zygosity_;
}
inline void Variant::set_allocated_zygosity(::org::phenopackets::schema::v1::core::OntologyClass* zygosity) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
if (message_arena == nullptr) {
delete zygosity_;
}
if (zygosity) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
zygosity = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, zygosity, submessage_arena);
}
} else {
}
zygosity_ = zygosity;
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.Variant.zygosity)
}
inline bool Variant::has_allele() const {
return allele_case() != ALLELE_NOT_SET;
}
inline void Variant::clear_has_allele() {
_oneof_case_[0] = ALLELE_NOT_SET;
}
inline Variant::AlleleCase Variant::allele_case() const {
return Variant::AlleleCase(_oneof_case_[0]);
}
// -------------------------------------------------------------------
// HgvsAllele
// string id = 1;
inline void HgvsAllele::clear_id() {
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& HgvsAllele::id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.HgvsAllele.id)
return id_.GetNoArena();
}
inline void HgvsAllele::set_id(const std::string& value) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.HgvsAllele.id)
}
inline void HgvsAllele::set_id(std::string&& value) {
id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.HgvsAllele.id)
}
inline void HgvsAllele::set_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.HgvsAllele.id)
}
inline void HgvsAllele::set_id(const char* value, size_t size) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.HgvsAllele.id)
}
inline std::string* HgvsAllele::mutable_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.HgvsAllele.id)
return id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* HgvsAllele::release_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.HgvsAllele.id)
return id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void HgvsAllele::set_allocated_id(std::string* id) {
if (id != nullptr) {
} else {
}
id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.HgvsAllele.id)
}
// string hgvs = 2;
inline void HgvsAllele::clear_hgvs() {
hgvs_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& HgvsAllele::hgvs() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.HgvsAllele.hgvs)
return hgvs_.GetNoArena();
}
inline void HgvsAllele::set_hgvs(const std::string& value) {
hgvs_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.HgvsAllele.hgvs)
}
inline void HgvsAllele::set_hgvs(std::string&& value) {
hgvs_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.HgvsAllele.hgvs)
}
inline void HgvsAllele::set_hgvs(const char* value) {
GOOGLE_DCHECK(value != nullptr);
hgvs_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.HgvsAllele.hgvs)
}
inline void HgvsAllele::set_hgvs(const char* value, size_t size) {
hgvs_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.HgvsAllele.hgvs)
}
inline std::string* HgvsAllele::mutable_hgvs() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.HgvsAllele.hgvs)
return hgvs_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* HgvsAllele::release_hgvs() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.HgvsAllele.hgvs)
return hgvs_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void HgvsAllele::set_allocated_hgvs(std::string* hgvs) {
if (hgvs != nullptr) {
} else {
}
hgvs_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), hgvs);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.HgvsAllele.hgvs)
}
// -------------------------------------------------------------------
// VcfAllele
// string vcf_version = 1;
inline void VcfAllele::clear_vcf_version() {
vcf_version_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& VcfAllele::vcf_version() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.VcfAllele.vcf_version)
return vcf_version_.GetNoArena();
}
inline void VcfAllele::set_vcf_version(const std::string& value) {
vcf_version_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.VcfAllele.vcf_version)
}
inline void VcfAllele::set_vcf_version(std::string&& value) {
vcf_version_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.VcfAllele.vcf_version)
}
inline void VcfAllele::set_vcf_version(const char* value) {
GOOGLE_DCHECK(value != nullptr);
vcf_version_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.VcfAllele.vcf_version)
}
inline void VcfAllele::set_vcf_version(const char* value, size_t size) {
vcf_version_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.VcfAllele.vcf_version)
}
inline std::string* VcfAllele::mutable_vcf_version() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.VcfAllele.vcf_version)
return vcf_version_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* VcfAllele::release_vcf_version() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.VcfAllele.vcf_version)
return vcf_version_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void VcfAllele::set_allocated_vcf_version(std::string* vcf_version) {
if (vcf_version != nullptr) {
} else {
}
vcf_version_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), vcf_version);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.VcfAllele.vcf_version)
}
// string genome_assembly = 2;
inline void VcfAllele::clear_genome_assembly() {
genome_assembly_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& VcfAllele::genome_assembly() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.VcfAllele.genome_assembly)
return genome_assembly_.GetNoArena();
}
inline void VcfAllele::set_genome_assembly(const std::string& value) {
genome_assembly_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.VcfAllele.genome_assembly)
}
inline void VcfAllele::set_genome_assembly(std::string&& value) {
genome_assembly_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.VcfAllele.genome_assembly)
}
inline void VcfAllele::set_genome_assembly(const char* value) {
GOOGLE_DCHECK(value != nullptr);
genome_assembly_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.VcfAllele.genome_assembly)
}
inline void VcfAllele::set_genome_assembly(const char* value, size_t size) {
genome_assembly_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.VcfAllele.genome_assembly)
}
inline std::string* VcfAllele::mutable_genome_assembly() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.VcfAllele.genome_assembly)
return genome_assembly_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* VcfAllele::release_genome_assembly() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.VcfAllele.genome_assembly)
return genome_assembly_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void VcfAllele::set_allocated_genome_assembly(std::string* genome_assembly) {
if (genome_assembly != nullptr) {
} else {
}
genome_assembly_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), genome_assembly);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.VcfAllele.genome_assembly)
}
// string id = 3;
inline void VcfAllele::clear_id() {
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& VcfAllele::id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.VcfAllele.id)
return id_.GetNoArena();
}
inline void VcfAllele::set_id(const std::string& value) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.VcfAllele.id)
}
inline void VcfAllele::set_id(std::string&& value) {
id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.VcfAllele.id)
}
inline void VcfAllele::set_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.VcfAllele.id)
}
inline void VcfAllele::set_id(const char* value, size_t size) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.VcfAllele.id)
}
inline std::string* VcfAllele::mutable_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.VcfAllele.id)
return id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* VcfAllele::release_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.VcfAllele.id)
return id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void VcfAllele::set_allocated_id(std::string* id) {
if (id != nullptr) {
} else {
}
id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.VcfAllele.id)
}
// string chr = 4;
inline void VcfAllele::clear_chr() {
chr_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& VcfAllele::chr() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.VcfAllele.chr)
return chr_.GetNoArena();
}
inline void VcfAllele::set_chr(const std::string& value) {
chr_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.VcfAllele.chr)
}
inline void VcfAllele::set_chr(std::string&& value) {
chr_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.VcfAllele.chr)
}
inline void VcfAllele::set_chr(const char* value) {
GOOGLE_DCHECK(value != nullptr);
chr_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.VcfAllele.chr)
}
inline void VcfAllele::set_chr(const char* value, size_t size) {
chr_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.VcfAllele.chr)
}
inline std::string* VcfAllele::mutable_chr() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.VcfAllele.chr)
return chr_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* VcfAllele::release_chr() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.VcfAllele.chr)
return chr_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void VcfAllele::set_allocated_chr(std::string* chr) {
if (chr != nullptr) {
} else {
}
chr_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), chr);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.VcfAllele.chr)
}
// int32 pos = 5;
inline void VcfAllele::clear_pos() {
pos_ = 0;
}
inline ::PROTOBUF_NAMESPACE_ID::int32 VcfAllele::pos() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.VcfAllele.pos)
return pos_;
}
inline void VcfAllele::set_pos(::PROTOBUF_NAMESPACE_ID::int32 value) {
pos_ = value;
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.VcfAllele.pos)
}
// string ref = 6;
inline void VcfAllele::clear_ref() {
ref_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& VcfAllele::ref() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.VcfAllele.ref)
return ref_.GetNoArena();
}
inline void VcfAllele::set_ref(const std::string& value) {
ref_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.VcfAllele.ref)
}
inline void VcfAllele::set_ref(std::string&& value) {
ref_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.VcfAllele.ref)
}
inline void VcfAllele::set_ref(const char* value) {
GOOGLE_DCHECK(value != nullptr);
ref_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.VcfAllele.ref)
}
inline void VcfAllele::set_ref(const char* value, size_t size) {
ref_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.VcfAllele.ref)
}
inline std::string* VcfAllele::mutable_ref() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.VcfAllele.ref)
return ref_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* VcfAllele::release_ref() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.VcfAllele.ref)
return ref_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void VcfAllele::set_allocated_ref(std::string* ref) {
if (ref != nullptr) {
} else {
}
ref_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ref);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.VcfAllele.ref)
}
// string alt = 7;
inline void VcfAllele::clear_alt() {
alt_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& VcfAllele::alt() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.VcfAllele.alt)
return alt_.GetNoArena();
}
inline void VcfAllele::set_alt(const std::string& value) {
alt_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.VcfAllele.alt)
}
inline void VcfAllele::set_alt(std::string&& value) {
alt_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.VcfAllele.alt)
}
inline void VcfAllele::set_alt(const char* value) {
GOOGLE_DCHECK(value != nullptr);
alt_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.VcfAllele.alt)
}
inline void VcfAllele::set_alt(const char* value, size_t size) {
alt_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.VcfAllele.alt)
}
inline std::string* VcfAllele::mutable_alt() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.VcfAllele.alt)
return alt_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* VcfAllele::release_alt() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.VcfAllele.alt)
return alt_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void VcfAllele::set_allocated_alt(std::string* alt) {
if (alt != nullptr) {
} else {
}
alt_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), alt);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.VcfAllele.alt)
}
// string info = 8;
inline void VcfAllele::clear_info() {
info_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& VcfAllele::info() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.VcfAllele.info)
return info_.GetNoArena();
}
inline void VcfAllele::set_info(const std::string& value) {
info_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.VcfAllele.info)
}
inline void VcfAllele::set_info(std::string&& value) {
info_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.VcfAllele.info)
}
inline void VcfAllele::set_info(const char* value) {
GOOGLE_DCHECK(value != nullptr);
info_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.VcfAllele.info)
}
inline void VcfAllele::set_info(const char* value, size_t size) {
info_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.VcfAllele.info)
}
inline std::string* VcfAllele::mutable_info() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.VcfAllele.info)
return info_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* VcfAllele::release_info() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.VcfAllele.info)
return info_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void VcfAllele::set_allocated_info(std::string* info) {
if (info != nullptr) {
} else {
}
info_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), info);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.VcfAllele.info)
}
// -------------------------------------------------------------------
// SpdiAllele
// string id = 1;
inline void SpdiAllele::clear_id() {
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& SpdiAllele::id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.SpdiAllele.id)
return id_.GetNoArena();
}
inline void SpdiAllele::set_id(const std::string& value) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.SpdiAllele.id)
}
inline void SpdiAllele::set_id(std::string&& value) {
id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.SpdiAllele.id)
}
inline void SpdiAllele::set_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.SpdiAllele.id)
}
inline void SpdiAllele::set_id(const char* value, size_t size) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.SpdiAllele.id)
}
inline std::string* SpdiAllele::mutable_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.SpdiAllele.id)
return id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* SpdiAllele::release_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.SpdiAllele.id)
return id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void SpdiAllele::set_allocated_id(std::string* id) {
if (id != nullptr) {
} else {
}
id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.SpdiAllele.id)
}
// string seq_id = 2;
inline void SpdiAllele::clear_seq_id() {
seq_id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& SpdiAllele::seq_id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.SpdiAllele.seq_id)
return seq_id_.GetNoArena();
}
inline void SpdiAllele::set_seq_id(const std::string& value) {
seq_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.SpdiAllele.seq_id)
}
inline void SpdiAllele::set_seq_id(std::string&& value) {
seq_id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.SpdiAllele.seq_id)
}
inline void SpdiAllele::set_seq_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
seq_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.SpdiAllele.seq_id)
}
inline void SpdiAllele::set_seq_id(const char* value, size_t size) {
seq_id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.SpdiAllele.seq_id)
}
inline std::string* SpdiAllele::mutable_seq_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.SpdiAllele.seq_id)
return seq_id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* SpdiAllele::release_seq_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.SpdiAllele.seq_id)
return seq_id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void SpdiAllele::set_allocated_seq_id(std::string* seq_id) {
if (seq_id != nullptr) {
} else {
}
seq_id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), seq_id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.SpdiAllele.seq_id)
}
// int32 position = 3;
inline void SpdiAllele::clear_position() {
position_ = 0;
}
inline ::PROTOBUF_NAMESPACE_ID::int32 SpdiAllele::position() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.SpdiAllele.position)
return position_;
}
inline void SpdiAllele::set_position(::PROTOBUF_NAMESPACE_ID::int32 value) {
position_ = value;
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.SpdiAllele.position)
}
// string deleted_sequence = 4;
inline void SpdiAllele::clear_deleted_sequence() {
deleted_sequence_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& SpdiAllele::deleted_sequence() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.SpdiAllele.deleted_sequence)
return deleted_sequence_.GetNoArena();
}
inline void SpdiAllele::set_deleted_sequence(const std::string& value) {
deleted_sequence_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.SpdiAllele.deleted_sequence)
}
inline void SpdiAllele::set_deleted_sequence(std::string&& value) {
deleted_sequence_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.SpdiAllele.deleted_sequence)
}
inline void SpdiAllele::set_deleted_sequence(const char* value) {
GOOGLE_DCHECK(value != nullptr);
deleted_sequence_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.SpdiAllele.deleted_sequence)
}
inline void SpdiAllele::set_deleted_sequence(const char* value, size_t size) {
deleted_sequence_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.SpdiAllele.deleted_sequence)
}
inline std::string* SpdiAllele::mutable_deleted_sequence() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.SpdiAllele.deleted_sequence)
return deleted_sequence_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* SpdiAllele::release_deleted_sequence() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.SpdiAllele.deleted_sequence)
return deleted_sequence_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void SpdiAllele::set_allocated_deleted_sequence(std::string* deleted_sequence) {
if (deleted_sequence != nullptr) {
} else {
}
deleted_sequence_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), deleted_sequence);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.SpdiAllele.deleted_sequence)
}
// string inserted_sequence = 5;
inline void SpdiAllele::clear_inserted_sequence() {
inserted_sequence_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& SpdiAllele::inserted_sequence() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.SpdiAllele.inserted_sequence)
return inserted_sequence_.GetNoArena();
}
inline void SpdiAllele::set_inserted_sequence(const std::string& value) {
inserted_sequence_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.SpdiAllele.inserted_sequence)
}
inline void SpdiAllele::set_inserted_sequence(std::string&& value) {
inserted_sequence_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.SpdiAllele.inserted_sequence)
}
inline void SpdiAllele::set_inserted_sequence(const char* value) {
GOOGLE_DCHECK(value != nullptr);
inserted_sequence_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.SpdiAllele.inserted_sequence)
}
inline void SpdiAllele::set_inserted_sequence(const char* value, size_t size) {
inserted_sequence_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.SpdiAllele.inserted_sequence)
}
inline std::string* SpdiAllele::mutable_inserted_sequence() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.SpdiAllele.inserted_sequence)
return inserted_sequence_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* SpdiAllele::release_inserted_sequence() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.SpdiAllele.inserted_sequence)
return inserted_sequence_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void SpdiAllele::set_allocated_inserted_sequence(std::string* inserted_sequence) {
if (inserted_sequence != nullptr) {
} else {
}
inserted_sequence_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), inserted_sequence);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.SpdiAllele.inserted_sequence)
}
// -------------------------------------------------------------------
// IscnAllele
// string id = 1;
inline void IscnAllele::clear_id() {
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& IscnAllele::id() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.IscnAllele.id)
return id_.GetNoArena();
}
inline void IscnAllele::set_id(const std::string& value) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.IscnAllele.id)
}
inline void IscnAllele::set_id(std::string&& value) {
id_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.IscnAllele.id)
}
inline void IscnAllele::set_id(const char* value) {
GOOGLE_DCHECK(value != nullptr);
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.IscnAllele.id)
}
inline void IscnAllele::set_id(const char* value, size_t size) {
id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.IscnAllele.id)
}
inline std::string* IscnAllele::mutable_id() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.IscnAllele.id)
return id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* IscnAllele::release_id() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.IscnAllele.id)
return id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void IscnAllele::set_allocated_id(std::string* id) {
if (id != nullptr) {
} else {
}
id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), id);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.IscnAllele.id)
}
// string iscn = 2;
inline void IscnAllele::clear_iscn() {
iscn_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& IscnAllele::iscn() const {
// @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.core.IscnAllele.iscn)
return iscn_.GetNoArena();
}
inline void IscnAllele::set_iscn(const std::string& value) {
iscn_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
// @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.core.IscnAllele.iscn)
}
inline void IscnAllele::set_iscn(std::string&& value) {
iscn_.SetNoArena(
&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
// @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.core.IscnAllele.iscn)
}
inline void IscnAllele::set_iscn(const char* value) {
GOOGLE_DCHECK(value != nullptr);
iscn_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
// @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.core.IscnAllele.iscn)
}
inline void IscnAllele::set_iscn(const char* value, size_t size) {
iscn_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
::std::string(reinterpret_cast(value), size));
// @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.core.IscnAllele.iscn)
}
inline std::string* IscnAllele::mutable_iscn() {
// @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.core.IscnAllele.iscn)
return iscn_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* IscnAllele::release_iscn() {
// @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.core.IscnAllele.iscn)
return iscn_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void IscnAllele::set_allocated_iscn(std::string* iscn) {
if (iscn != nullptr) {
} else {
}
iscn_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), iscn);
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.core.IscnAllele.iscn)
}
#ifdef __GNUC__
#pragma GCC diagnostic pop
#endif // __GNUC__
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// -------------------------------------------------------------------
// @@protoc_insertion_point(namespace_scope)
} // namespace core
} // namespace v1
} // namespace schema
} // namespace phenopackets
} // namespace org
PROTOBUF_NAMESPACE_OPEN
template <> struct is_proto_enum< ::org::phenopackets::schema::v1::core::Pedigree_Person_AffectedStatus> : ::std::true_type {};
template <>
inline const EnumDescriptor* GetEnumDescriptor< ::org::phenopackets::schema::v1::core::Pedigree_Person_AffectedStatus>() {
return ::org::phenopackets::schema::v1::core::Pedigree_Person_AffectedStatus_descriptor();
}
template <> struct is_proto_enum< ::org::phenopackets::schema::v1::core::HtsFile_HtsFormat> : ::std::true_type {};
template <>
inline const EnumDescriptor* GetEnumDescriptor< ::org::phenopackets::schema::v1::core::HtsFile_HtsFormat>() {
return ::org::phenopackets::schema::v1::core::HtsFile_HtsFormat_descriptor();
}
template <> struct is_proto_enum< ::org::phenopackets::schema::v1::core::Sex> : ::std::true_type {};
template <>
inline const EnumDescriptor* GetEnumDescriptor< ::org::phenopackets::schema::v1::core::Sex>() {
return ::org::phenopackets::schema::v1::core::Sex_descriptor();
}
template <> struct is_proto_enum< ::org::phenopackets::schema::v1::core::KaryotypicSex> : ::std::true_type {};
template <>
inline const EnumDescriptor* GetEnumDescriptor< ::org::phenopackets::schema::v1::core::KaryotypicSex>() {
return ::org::phenopackets::schema::v1::core::KaryotypicSex_descriptor();
}
PROTOBUF_NAMESPACE_CLOSE
// @@protoc_insertion_point(global_scope)
#include
#endif // GOOGLE_PROTOBUF_INCLUDED_GOOGLE_PROTOBUF_INCLUDED_base_2eproto