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A Protobuf schema for capturing clinical phenotypes
// Generated by the protocol buffer compiler. DO NOT EDIT!
// source: interpretation.proto
#include "interpretation.pb.h"
#include
#include
#include
#include
#include
#include
#include
#include
#include
// @@protoc_insertion_point(includes)
#include
extern PROTOBUF_INTERNAL_EXPORT_interpretation_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<2> scc_info_Diagnosis_interpretation_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_phenopackets_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<4> scc_info_Family_phenopackets_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_interpretation_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<2> scc_info_GenomicInterpretation_interpretation_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_phenopackets_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<8> scc_info_Phenopacket_phenopackets_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<3> scc_info_Disease_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<0> scc_info_Gene_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<4> scc_info_MetaData_base_2eproto;
extern PROTOBUF_INTERNAL_EXPORT_base_2eproto ::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<5> scc_info_Variant_base_2eproto;
namespace org {
namespace phenopackets {
namespace schema {
namespace v1 {
class InterpretationDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
const ::org::phenopackets::schema::v1::Phenopacket* phenopacket_;
const ::org::phenopackets::schema::v1::Family* family_;
} _Interpretation_default_instance_;
class DiagnosisDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
} _Diagnosis_default_instance_;
class GenomicInterpretationDefaultTypeInternal {
public:
::PROTOBUF_NAMESPACE_ID::internal::ExplicitlyConstructed _instance;
const ::org::phenopackets::schema::v1::core::Gene* gene_;
const ::org::phenopackets::schema::v1::core::Variant* variant_;
} _GenomicInterpretation_default_instance_;
} // namespace v1
} // namespace schema
} // namespace phenopackets
} // namespace org
static void InitDefaultsscc_info_Diagnosis_interpretation_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::_Diagnosis_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::Diagnosis();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::Diagnosis::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<2> scc_info_Diagnosis_interpretation_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 2, InitDefaultsscc_info_Diagnosis_interpretation_2eproto}, {
&scc_info_Disease_base_2eproto.base,
&scc_info_GenomicInterpretation_interpretation_2eproto.base,}};
static void InitDefaultsscc_info_GenomicInterpretation_interpretation_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::_GenomicInterpretation_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::GenomicInterpretation();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::GenomicInterpretation::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<2> scc_info_GenomicInterpretation_interpretation_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 2, InitDefaultsscc_info_GenomicInterpretation_interpretation_2eproto}, {
&scc_info_Gene_base_2eproto.base,
&scc_info_Variant_base_2eproto.base,}};
static void InitDefaultsscc_info_Interpretation_interpretation_2eproto() {
GOOGLE_PROTOBUF_VERIFY_VERSION;
{
void* ptr = &::org::phenopackets::schema::v1::_Interpretation_default_instance_;
new (ptr) ::org::phenopackets::schema::v1::Interpretation();
::PROTOBUF_NAMESPACE_ID::internal::OnShutdownDestroyMessage(ptr);
}
::org::phenopackets::schema::v1::Interpretation::InitAsDefaultInstance();
}
::PROTOBUF_NAMESPACE_ID::internal::SCCInfo<4> scc_info_Interpretation_interpretation_2eproto =
{{ATOMIC_VAR_INIT(::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase::kUninitialized), 4, InitDefaultsscc_info_Interpretation_interpretation_2eproto}, {
&scc_info_Phenopacket_phenopackets_2eproto.base,
&scc_info_Family_phenopackets_2eproto.base,
&scc_info_Diagnosis_interpretation_2eproto.base,
&scc_info_MetaData_base_2eproto.base,}};
static ::PROTOBUF_NAMESPACE_ID::Metadata file_level_metadata_interpretation_2eproto[3];
static const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor* file_level_enum_descriptors_interpretation_2eproto[2];
static constexpr ::PROTOBUF_NAMESPACE_ID::ServiceDescriptor const** file_level_service_descriptors_interpretation_2eproto = nullptr;
const ::PROTOBUF_NAMESPACE_ID::uint32 TableStruct_interpretation_2eproto::offsets[] PROTOBUF_SECTION_VARIABLE(protodesc_cold) = {
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::Interpretation, _internal_metadata_),
~0u, // no _extensions_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::Interpretation, _oneof_case_[0]),
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::Interpretation, id_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::Interpretation, resolution_status_),
offsetof(::org::phenopackets::schema::v1::InterpretationDefaultTypeInternal, phenopacket_),
offsetof(::org::phenopackets::schema::v1::InterpretationDefaultTypeInternal, family_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::Interpretation, diagnosis_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::Interpretation, meta_data_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::Interpretation, phenopacket_or_family_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::Diagnosis, _internal_metadata_),
~0u, // no _extensions_
~0u, // no _oneof_case_
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::Diagnosis, disease_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::Diagnosis, genomic_interpretations_),
~0u, // no _has_bits_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::GenomicInterpretation, _internal_metadata_),
~0u, // no _extensions_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::GenomicInterpretation, _oneof_case_[0]),
~0u, // no _weak_field_map_
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::GenomicInterpretation, status_),
offsetof(::org::phenopackets::schema::v1::GenomicInterpretationDefaultTypeInternal, gene_),
offsetof(::org::phenopackets::schema::v1::GenomicInterpretationDefaultTypeInternal, variant_),
PROTOBUF_FIELD_OFFSET(::org::phenopackets::schema::v1::GenomicInterpretation, call_),
};
static const ::PROTOBUF_NAMESPACE_ID::internal::MigrationSchema schemas[] PROTOBUF_SECTION_VARIABLE(protodesc_cold) = {
{ 0, -1, sizeof(::org::phenopackets::schema::v1::Interpretation)},
{ 12, -1, sizeof(::org::phenopackets::schema::v1::Diagnosis)},
{ 19, -1, sizeof(::org::phenopackets::schema::v1::GenomicInterpretation)},
};
static ::PROTOBUF_NAMESPACE_ID::Message const * const file_default_instances[] = {
reinterpret_cast(&::org::phenopackets::schema::v1::_Interpretation_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::_Diagnosis_default_instance_),
reinterpret_cast(&::org::phenopackets::schema::v1::_GenomicInterpretation_default_instance_),
};
const char descriptor_table_protodef_interpretation_2eproto[] =
"\n\024interpretation.proto\022\032org.phenopackets"
".schema.v1\032\nbase.proto\032\022phenopackets.pro"
"to\"\307\003\n\016Interpretation\022\n\n\002id\030\001 \001(\t\022V\n\021res"
"olution_status\030\002 \001(\0162;.org.phenopackets."
"schema.v1.Interpretation.ResolutionStatu"
"s\022>\n\013phenopacket\030\003 \001(\0132\'.org.phenopacket"
"s.schema.v1.PhenopacketH\000\0224\n\006family\030\004 \001("
"\0132\".org.phenopackets.schema.v1.FamilyH\000\022"
"8\n\tdiagnosis\030\005 \003(\0132%.org.phenopackets.sc"
"hema.v1.Diagnosis\022<\n\tmeta_data\030\006 \001(\0132).o"
"rg.phenopackets.schema.v1.core.MetaData\""
"J\n\020ResolutionStatus\022\013\n\007UNKNOWN\020\000\022\n\n\006SOLV"
"ED\020\001\022\014\n\010UNSOLVED\020\002\022\017\n\013IN_PROGRESS\020\003B\027\n\025p"
"henopacket_or_family\"\232\001\n\tDiagnosis\0229\n\007di"
"sease\030\001 \001(\0132(.org.phenopackets.schema.v1"
".core.Disease\022R\n\027genomic_interpretations"
"\030\002 \003(\01321.org.phenopackets.schema.v1.Geno"
"micInterpretation\"\240\002\n\025GenomicInterpretat"
"ion\022H\n\006status\030\001 \001(\01628.org.phenopackets.s"
"chema.v1.GenomicInterpretation.Status\0225\n"
"\004gene\030\002 \001(\0132%.org.phenopackets.schema.v1"
".core.GeneH\000\022;\n\007variant\030\003 \001(\0132(.org.phen"
"opackets.schema.v1.core.VariantH\000\"A\n\006Sta"
"tus\022\013\n\007UNKNOWN\020\000\022\014\n\010REJECTED\020\001\022\r\n\tCANDID"
"ATE\020\002\022\r\n\tCAUSATIVE\020\003B\006\n\004callB\036\n\032org.phen"
"opackets.schema.v1P\001b\006proto3"
;
static const ::PROTOBUF_NAMESPACE_ID::internal::DescriptorTable*const descriptor_table_interpretation_2eproto_deps[2] = {
&::descriptor_table_base_2eproto,
&::descriptor_table_phenopackets_2eproto,
};
static ::PROTOBUF_NAMESPACE_ID::internal::SCCInfoBase*const descriptor_table_interpretation_2eproto_sccs[3] = {
&scc_info_Diagnosis_interpretation_2eproto.base,
&scc_info_GenomicInterpretation_interpretation_2eproto.base,
&scc_info_Interpretation_interpretation_2eproto.base,
};
static ::PROTOBUF_NAMESPACE_ID::internal::once_flag descriptor_table_interpretation_2eproto_once;
static bool descriptor_table_interpretation_2eproto_initialized = false;
const ::PROTOBUF_NAMESPACE_ID::internal::DescriptorTable descriptor_table_interpretation_2eproto = {
&descriptor_table_interpretation_2eproto_initialized, descriptor_table_protodef_interpretation_2eproto, "interpretation.proto", 1028,
&descriptor_table_interpretation_2eproto_once, descriptor_table_interpretation_2eproto_sccs, descriptor_table_interpretation_2eproto_deps, 3, 2,
schemas, file_default_instances, TableStruct_interpretation_2eproto::offsets,
file_level_metadata_interpretation_2eproto, 3, file_level_enum_descriptors_interpretation_2eproto, file_level_service_descriptors_interpretation_2eproto,
};
// Force running AddDescriptors() at dynamic initialization time.
static bool dynamic_init_dummy_interpretation_2eproto = ( ::PROTOBUF_NAMESPACE_ID::internal::AddDescriptors(&descriptor_table_interpretation_2eproto), true);
namespace org {
namespace phenopackets {
namespace schema {
namespace v1 {
const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor* Interpretation_ResolutionStatus_descriptor() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&descriptor_table_interpretation_2eproto);
return file_level_enum_descriptors_interpretation_2eproto[0];
}
bool Interpretation_ResolutionStatus_IsValid(int value) {
switch (value) {
case 0:
case 1:
case 2:
case 3:
return true;
default:
return false;
}
}
#if (__cplusplus < 201703) && (!defined(_MSC_VER) || _MSC_VER >= 1900)
constexpr Interpretation_ResolutionStatus Interpretation::UNKNOWN;
constexpr Interpretation_ResolutionStatus Interpretation::SOLVED;
constexpr Interpretation_ResolutionStatus Interpretation::UNSOLVED;
constexpr Interpretation_ResolutionStatus Interpretation::IN_PROGRESS;
constexpr Interpretation_ResolutionStatus Interpretation::ResolutionStatus_MIN;
constexpr Interpretation_ResolutionStatus Interpretation::ResolutionStatus_MAX;
constexpr int Interpretation::ResolutionStatus_ARRAYSIZE;
#endif // (__cplusplus < 201703) && (!defined(_MSC_VER) || _MSC_VER >= 1900)
const ::PROTOBUF_NAMESPACE_ID::EnumDescriptor* GenomicInterpretation_Status_descriptor() {
::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&descriptor_table_interpretation_2eproto);
return file_level_enum_descriptors_interpretation_2eproto[1];
}
bool GenomicInterpretation_Status_IsValid(int value) {
switch (value) {
case 0:
case 1:
case 2:
case 3:
return true;
default:
return false;
}
}
#if (__cplusplus < 201703) && (!defined(_MSC_VER) || _MSC_VER >= 1900)
constexpr GenomicInterpretation_Status GenomicInterpretation::UNKNOWN;
constexpr GenomicInterpretation_Status GenomicInterpretation::REJECTED;
constexpr GenomicInterpretation_Status GenomicInterpretation::CANDIDATE;
constexpr GenomicInterpretation_Status GenomicInterpretation::CAUSATIVE;
constexpr GenomicInterpretation_Status GenomicInterpretation::Status_MIN;
constexpr GenomicInterpretation_Status GenomicInterpretation::Status_MAX;
constexpr int GenomicInterpretation::Status_ARRAYSIZE;
#endif // (__cplusplus < 201703) && (!defined(_MSC_VER) || _MSC_VER >= 1900)
// ===================================================================
void Interpretation::InitAsDefaultInstance() {
::org::phenopackets::schema::v1::_Interpretation_default_instance_.phenopacket_ = const_cast< ::org::phenopackets::schema::v1::Phenopacket*>(
::org::phenopackets::schema::v1::Phenopacket::internal_default_instance());
::org::phenopackets::schema::v1::_Interpretation_default_instance_.family_ = const_cast< ::org::phenopackets::schema::v1::Family*>(
::org::phenopackets::schema::v1::Family::internal_default_instance());
::org::phenopackets::schema::v1::_Interpretation_default_instance_._instance.get_mutable()->meta_data_ = const_cast< ::org::phenopackets::schema::v1::core::MetaData*>(
::org::phenopackets::schema::v1::core::MetaData::internal_default_instance());
}
class Interpretation::HasBitSetters {
public:
static const ::org::phenopackets::schema::v1::Phenopacket& phenopacket(const Interpretation* msg);
static const ::org::phenopackets::schema::v1::Family& family(const Interpretation* msg);
static const ::org::phenopackets::schema::v1::core::MetaData& meta_data(const Interpretation* msg);
};
const ::org::phenopackets::schema::v1::Phenopacket&
Interpretation::HasBitSetters::phenopacket(const Interpretation* msg) {
return *msg->phenopacket_or_family_.phenopacket_;
}
const ::org::phenopackets::schema::v1::Family&
Interpretation::HasBitSetters::family(const Interpretation* msg) {
return *msg->phenopacket_or_family_.family_;
}
const ::org::phenopackets::schema::v1::core::MetaData&
Interpretation::HasBitSetters::meta_data(const Interpretation* msg) {
return *msg->meta_data_;
}
void Interpretation::set_allocated_phenopacket(::org::phenopackets::schema::v1::Phenopacket* phenopacket) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_phenopacket_or_family();
if (phenopacket) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
phenopacket = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, phenopacket, submessage_arena);
}
set_has_phenopacket();
phenopacket_or_family_.phenopacket_ = phenopacket;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.Interpretation.phenopacket)
}
void Interpretation::clear_phenopacket() {
if (has_phenopacket()) {
delete phenopacket_or_family_.phenopacket_;
clear_has_phenopacket_or_family();
}
}
void Interpretation::set_allocated_family(::org::phenopackets::schema::v1::Family* family) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_phenopacket_or_family();
if (family) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
family = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, family, submessage_arena);
}
set_has_family();
phenopacket_or_family_.family_ = family;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.Interpretation.family)
}
void Interpretation::clear_family() {
if (has_family()) {
delete phenopacket_or_family_.family_;
clear_has_phenopacket_or_family();
}
}
void Interpretation::clear_meta_data() {
if (GetArenaNoVirtual() == nullptr && meta_data_ != nullptr) {
delete meta_data_;
}
meta_data_ = nullptr;
}
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int Interpretation::kIdFieldNumber;
const int Interpretation::kResolutionStatusFieldNumber;
const int Interpretation::kPhenopacketFieldNumber;
const int Interpretation::kFamilyFieldNumber;
const int Interpretation::kDiagnosisFieldNumber;
const int Interpretation::kMetaDataFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
Interpretation::Interpretation()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.Interpretation)
}
Interpretation::Interpretation(const Interpretation& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr),
diagnosis_(from.diagnosis_) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (from.id().size() > 0) {
id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.id_);
}
if (from.has_meta_data()) {
meta_data_ = new ::org::phenopackets::schema::v1::core::MetaData(*from.meta_data_);
} else {
meta_data_ = nullptr;
}
resolution_status_ = from.resolution_status_;
clear_has_phenopacket_or_family();
switch (from.phenopacket_or_family_case()) {
case kPhenopacket: {
mutable_phenopacket()->::org::phenopackets::schema::v1::Phenopacket::MergeFrom(from.phenopacket());
break;
}
case kFamily: {
mutable_family()->::org::phenopackets::schema::v1::Family::MergeFrom(from.family());
break;
}
case PHENOPACKET_OR_FAMILY_NOT_SET: {
break;
}
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.Interpretation)
}
void Interpretation::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_Interpretation_interpretation_2eproto.base);
id_.UnsafeSetDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
::memset(&meta_data_, 0, static_cast(
reinterpret_cast(&resolution_status_) -
reinterpret_cast(&meta_data_)) + sizeof(resolution_status_));
clear_has_phenopacket_or_family();
}
Interpretation::~Interpretation() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.Interpretation)
SharedDtor();
}
void Interpretation::SharedDtor() {
id_.DestroyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (this != internal_default_instance()) delete meta_data_;
if (has_phenopacket_or_family()) {
clear_phenopacket_or_family();
}
}
void Interpretation::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const Interpretation& Interpretation::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_Interpretation_interpretation_2eproto.base);
return *internal_default_instance();
}
void Interpretation::clear_phenopacket_or_family() {
// @@protoc_insertion_point(one_of_clear_start:org.phenopackets.schema.v1.Interpretation)
switch (phenopacket_or_family_case()) {
case kPhenopacket: {
delete phenopacket_or_family_.phenopacket_;
break;
}
case kFamily: {
delete phenopacket_or_family_.family_;
break;
}
case PHENOPACKET_OR_FAMILY_NOT_SET: {
break;
}
}
_oneof_case_[0] = PHENOPACKET_OR_FAMILY_NOT_SET;
}
void Interpretation::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.Interpretation)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
diagnosis_.Clear();
id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
if (GetArenaNoVirtual() == nullptr && meta_data_ != nullptr) {
delete meta_data_;
}
meta_data_ = nullptr;
resolution_status_ = 0;
clear_phenopacket_or_family();
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* Interpretation::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// string id = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ::PROTOBUF_NAMESPACE_ID::internal::InlineGreedyStringParserUTF8(mutable_id(), ptr, ctx, "org.phenopackets.schema.v1.Interpretation.id");
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.Interpretation.ResolutionStatus resolution_status = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 16)) {
::PROTOBUF_NAMESPACE_ID::uint64 val = ::PROTOBUF_NAMESPACE_ID::internal::ReadVarint(&ptr);
CHK_(ptr);
set_resolution_status(static_cast<::org::phenopackets::schema::v1::Interpretation_ResolutionStatus>(val));
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.Phenopacket phenopacket = 3;
case 3:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 26)) {
ptr = ctx->ParseMessage(mutable_phenopacket(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.Family family = 4;
case 4:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 34)) {
ptr = ctx->ParseMessage(mutable_family(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// repeated .org.phenopackets.schema.v1.Diagnosis diagnosis = 5;
case 5:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 42)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(add_diagnosis(), ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 42);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.MetaData meta_data = 6;
case 6:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 50)) {
ptr = ctx->ParseMessage(mutable_meta_data(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool Interpretation::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.Interpretation)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// string id = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadString(
input, this->mutable_id()));
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::PARSE,
"org.phenopackets.schema.v1.Interpretation.id"));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.Interpretation.ResolutionStatus resolution_status = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (16 & 0xFF)) {
int value = 0;
DO_((::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadPrimitive<
int, ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::TYPE_ENUM>(
input, &value)));
set_resolution_status(static_cast< ::org::phenopackets::schema::v1::Interpretation_ResolutionStatus >(value));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.Phenopacket phenopacket = 3;
case 3: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (26 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_phenopacket()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.Family family = 4;
case 4: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (34 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_family()));
} else {
goto handle_unusual;
}
break;
}
// repeated .org.phenopackets.schema.v1.Diagnosis diagnosis = 5;
case 5: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (42 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, add_diagnosis()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.MetaData meta_data = 6;
case 6: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (50 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_meta_data()));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.Interpretation)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.Interpretation)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void Interpretation::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.Interpretation)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.Interpretation.id");
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringMaybeAliased(
1, this->id(), output);
}
// .org.phenopackets.schema.v1.Interpretation.ResolutionStatus resolution_status = 2;
if (this->resolution_status() != 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteEnum(
2, this->resolution_status(), output);
}
// .org.phenopackets.schema.v1.Phenopacket phenopacket = 3;
if (has_phenopacket()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
3, HasBitSetters::phenopacket(this), output);
}
// .org.phenopackets.schema.v1.Family family = 4;
if (has_family()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
4, HasBitSetters::family(this), output);
}
// repeated .org.phenopackets.schema.v1.Diagnosis diagnosis = 5;
for (unsigned int i = 0,
n = static_cast(this->diagnosis_size()); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
5,
this->diagnosis(static_cast(i)),
output);
}
// .org.phenopackets.schema.v1.core.MetaData meta_data = 6;
if (this->has_meta_data()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
6, HasBitSetters::meta_data(this), output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.Interpretation)
}
::PROTOBUF_NAMESPACE_ID::uint8* Interpretation::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.Interpretation)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// string id = 1;
if (this->id().size() > 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::VerifyUtf8String(
this->id().data(), static_cast(this->id().length()),
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::SERIALIZE,
"org.phenopackets.schema.v1.Interpretation.id");
target =
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteStringToArray(
1, this->id(), target);
}
// .org.phenopackets.schema.v1.Interpretation.ResolutionStatus resolution_status = 2;
if (this->resolution_status() != 0) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteEnumToArray(
2, this->resolution_status(), target);
}
// .org.phenopackets.schema.v1.Phenopacket phenopacket = 3;
if (has_phenopacket()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
3, HasBitSetters::phenopacket(this), target);
}
// .org.phenopackets.schema.v1.Family family = 4;
if (has_family()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
4, HasBitSetters::family(this), target);
}
// repeated .org.phenopackets.schema.v1.Diagnosis diagnosis = 5;
for (unsigned int i = 0,
n = static_cast(this->diagnosis_size()); i < n; i++) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
5, this->diagnosis(static_cast(i)), target);
}
// .org.phenopackets.schema.v1.core.MetaData meta_data = 6;
if (this->has_meta_data()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
6, HasBitSetters::meta_data(this), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.Interpretation)
return target;
}
size_t Interpretation::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.Interpretation)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// repeated .org.phenopackets.schema.v1.Diagnosis diagnosis = 5;
{
unsigned int count = static_cast(this->diagnosis_size());
total_size += 1UL * count;
for (unsigned int i = 0; i < count; i++) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
this->diagnosis(static_cast(i)));
}
}
// string id = 1;
if (this->id().size() > 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::StringSize(
this->id());
}
// .org.phenopackets.schema.v1.core.MetaData meta_data = 6;
if (this->has_meta_data()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*meta_data_);
}
// .org.phenopackets.schema.v1.Interpretation.ResolutionStatus resolution_status = 2;
if (this->resolution_status() != 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::EnumSize(this->resolution_status());
}
switch (phenopacket_or_family_case()) {
// .org.phenopackets.schema.v1.Phenopacket phenopacket = 3;
case kPhenopacket: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*phenopacket_or_family_.phenopacket_);
break;
}
// .org.phenopackets.schema.v1.Family family = 4;
case kFamily: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*phenopacket_or_family_.family_);
break;
}
case PHENOPACKET_OR_FAMILY_NOT_SET: {
break;
}
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void Interpretation::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.Interpretation)
GOOGLE_DCHECK_NE(&from, this);
const Interpretation* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.Interpretation)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.Interpretation)
MergeFrom(*source);
}
}
void Interpretation::MergeFrom(const Interpretation& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.Interpretation)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
diagnosis_.MergeFrom(from.diagnosis_);
if (from.id().size() > 0) {
id_.AssignWithDefault(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), from.id_);
}
if (from.has_meta_data()) {
mutable_meta_data()->::org::phenopackets::schema::v1::core::MetaData::MergeFrom(from.meta_data());
}
if (from.resolution_status() != 0) {
set_resolution_status(from.resolution_status());
}
switch (from.phenopacket_or_family_case()) {
case kPhenopacket: {
mutable_phenopacket()->::org::phenopackets::schema::v1::Phenopacket::MergeFrom(from.phenopacket());
break;
}
case kFamily: {
mutable_family()->::org::phenopackets::schema::v1::Family::MergeFrom(from.family());
break;
}
case PHENOPACKET_OR_FAMILY_NOT_SET: {
break;
}
}
}
void Interpretation::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.Interpretation)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void Interpretation::CopyFrom(const Interpretation& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.Interpretation)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool Interpretation::IsInitialized() const {
return true;
}
void Interpretation::Swap(Interpretation* other) {
if (other == this) return;
InternalSwap(other);
}
void Interpretation::InternalSwap(Interpretation* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
CastToBase(&diagnosis_)->InternalSwap(CastToBase(&other->diagnosis_));
id_.Swap(&other->id_, &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
GetArenaNoVirtual());
swap(meta_data_, other->meta_data_);
swap(resolution_status_, other->resolution_status_);
swap(phenopacket_or_family_, other->phenopacket_or_family_);
swap(_oneof_case_[0], other->_oneof_case_[0]);
}
::PROTOBUF_NAMESPACE_ID::Metadata Interpretation::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void Diagnosis::InitAsDefaultInstance() {
::org::phenopackets::schema::v1::_Diagnosis_default_instance_._instance.get_mutable()->disease_ = const_cast< ::org::phenopackets::schema::v1::core::Disease*>(
::org::phenopackets::schema::v1::core::Disease::internal_default_instance());
}
class Diagnosis::HasBitSetters {
public:
static const ::org::phenopackets::schema::v1::core::Disease& disease(const Diagnosis* msg);
};
const ::org::phenopackets::schema::v1::core::Disease&
Diagnosis::HasBitSetters::disease(const Diagnosis* msg) {
return *msg->disease_;
}
void Diagnosis::clear_disease() {
if (GetArenaNoVirtual() == nullptr && disease_ != nullptr) {
delete disease_;
}
disease_ = nullptr;
}
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int Diagnosis::kDiseaseFieldNumber;
const int Diagnosis::kGenomicInterpretationsFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
Diagnosis::Diagnosis()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.Diagnosis)
}
Diagnosis::Diagnosis(const Diagnosis& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr),
genomic_interpretations_(from.genomic_interpretations_) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
if (from.has_disease()) {
disease_ = new ::org::phenopackets::schema::v1::core::Disease(*from.disease_);
} else {
disease_ = nullptr;
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.Diagnosis)
}
void Diagnosis::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_Diagnosis_interpretation_2eproto.base);
disease_ = nullptr;
}
Diagnosis::~Diagnosis() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.Diagnosis)
SharedDtor();
}
void Diagnosis::SharedDtor() {
if (this != internal_default_instance()) delete disease_;
}
void Diagnosis::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const Diagnosis& Diagnosis::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_Diagnosis_interpretation_2eproto.base);
return *internal_default_instance();
}
void Diagnosis::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.Diagnosis)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
genomic_interpretations_.Clear();
if (GetArenaNoVirtual() == nullptr && disease_ != nullptr) {
delete disease_;
}
disease_ = nullptr;
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* Diagnosis::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// .org.phenopackets.schema.v1.core.Disease disease = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 10)) {
ptr = ctx->ParseMessage(mutable_disease(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// repeated .org.phenopackets.schema.v1.GenomicInterpretation genomic_interpretations = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr -= 1;
do {
ptr += 1;
ptr = ctx->ParseMessage(add_genomic_interpretations(), ptr);
CHK_(ptr);
if (!ctx->DataAvailable(ptr)) break;
} while (::PROTOBUF_NAMESPACE_ID::internal::UnalignedLoad<::PROTOBUF_NAMESPACE_ID::uint8>(ptr) == 18);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool Diagnosis::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.Diagnosis)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// .org.phenopackets.schema.v1.core.Disease disease = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (10 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_disease()));
} else {
goto handle_unusual;
}
break;
}
// repeated .org.phenopackets.schema.v1.GenomicInterpretation genomic_interpretations = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, add_genomic_interpretations()));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.Diagnosis)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.Diagnosis)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void Diagnosis::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.Diagnosis)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .org.phenopackets.schema.v1.core.Disease disease = 1;
if (this->has_disease()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
1, HasBitSetters::disease(this), output);
}
// repeated .org.phenopackets.schema.v1.GenomicInterpretation genomic_interpretations = 2;
for (unsigned int i = 0,
n = static_cast(this->genomic_interpretations_size()); i < n; i++) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
2,
this->genomic_interpretations(static_cast(i)),
output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.Diagnosis)
}
::PROTOBUF_NAMESPACE_ID::uint8* Diagnosis::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.Diagnosis)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .org.phenopackets.schema.v1.core.Disease disease = 1;
if (this->has_disease()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
1, HasBitSetters::disease(this), target);
}
// repeated .org.phenopackets.schema.v1.GenomicInterpretation genomic_interpretations = 2;
for (unsigned int i = 0,
n = static_cast(this->genomic_interpretations_size()); i < n; i++) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
2, this->genomic_interpretations(static_cast(i)), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.Diagnosis)
return target;
}
size_t Diagnosis::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.Diagnosis)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// repeated .org.phenopackets.schema.v1.GenomicInterpretation genomic_interpretations = 2;
{
unsigned int count = static_cast(this->genomic_interpretations_size());
total_size += 1UL * count;
for (unsigned int i = 0; i < count; i++) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
this->genomic_interpretations(static_cast(i)));
}
}
// .org.phenopackets.schema.v1.core.Disease disease = 1;
if (this->has_disease()) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*disease_);
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void Diagnosis::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.Diagnosis)
GOOGLE_DCHECK_NE(&from, this);
const Diagnosis* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.Diagnosis)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.Diagnosis)
MergeFrom(*source);
}
}
void Diagnosis::MergeFrom(const Diagnosis& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.Diagnosis)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
genomic_interpretations_.MergeFrom(from.genomic_interpretations_);
if (from.has_disease()) {
mutable_disease()->::org::phenopackets::schema::v1::core::Disease::MergeFrom(from.disease());
}
}
void Diagnosis::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.Diagnosis)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void Diagnosis::CopyFrom(const Diagnosis& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.Diagnosis)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool Diagnosis::IsInitialized() const {
return true;
}
void Diagnosis::Swap(Diagnosis* other) {
if (other == this) return;
InternalSwap(other);
}
void Diagnosis::InternalSwap(Diagnosis* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
CastToBase(&genomic_interpretations_)->InternalSwap(CastToBase(&other->genomic_interpretations_));
swap(disease_, other->disease_);
}
::PROTOBUF_NAMESPACE_ID::Metadata Diagnosis::GetMetadata() const {
return GetMetadataStatic();
}
// ===================================================================
void GenomicInterpretation::InitAsDefaultInstance() {
::org::phenopackets::schema::v1::_GenomicInterpretation_default_instance_.gene_ = const_cast< ::org::phenopackets::schema::v1::core::Gene*>(
::org::phenopackets::schema::v1::core::Gene::internal_default_instance());
::org::phenopackets::schema::v1::_GenomicInterpretation_default_instance_.variant_ = const_cast< ::org::phenopackets::schema::v1::core::Variant*>(
::org::phenopackets::schema::v1::core::Variant::internal_default_instance());
}
class GenomicInterpretation::HasBitSetters {
public:
static const ::org::phenopackets::schema::v1::core::Gene& gene(const GenomicInterpretation* msg);
static const ::org::phenopackets::schema::v1::core::Variant& variant(const GenomicInterpretation* msg);
};
const ::org::phenopackets::schema::v1::core::Gene&
GenomicInterpretation::HasBitSetters::gene(const GenomicInterpretation* msg) {
return *msg->call_.gene_;
}
const ::org::phenopackets::schema::v1::core::Variant&
GenomicInterpretation::HasBitSetters::variant(const GenomicInterpretation* msg) {
return *msg->call_.variant_;
}
void GenomicInterpretation::set_allocated_gene(::org::phenopackets::schema::v1::core::Gene* gene) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_call();
if (gene) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
gene = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, gene, submessage_arena);
}
set_has_gene();
call_.gene_ = gene;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.GenomicInterpretation.gene)
}
void GenomicInterpretation::clear_gene() {
if (has_gene()) {
delete call_.gene_;
clear_has_call();
}
}
void GenomicInterpretation::set_allocated_variant(::org::phenopackets::schema::v1::core::Variant* variant) {
::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
clear_call();
if (variant) {
::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
if (message_arena != submessage_arena) {
variant = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
message_arena, variant, submessage_arena);
}
set_has_variant();
call_.variant_ = variant;
}
// @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.GenomicInterpretation.variant)
}
void GenomicInterpretation::clear_variant() {
if (has_variant()) {
delete call_.variant_;
clear_has_call();
}
}
#if !defined(_MSC_VER) || _MSC_VER >= 1900
const int GenomicInterpretation::kStatusFieldNumber;
const int GenomicInterpretation::kGeneFieldNumber;
const int GenomicInterpretation::kVariantFieldNumber;
#endif // !defined(_MSC_VER) || _MSC_VER >= 1900
GenomicInterpretation::GenomicInterpretation()
: ::PROTOBUF_NAMESPACE_ID::Message(), _internal_metadata_(nullptr) {
SharedCtor();
// @@protoc_insertion_point(constructor:org.phenopackets.schema.v1.GenomicInterpretation)
}
GenomicInterpretation::GenomicInterpretation(const GenomicInterpretation& from)
: ::PROTOBUF_NAMESPACE_ID::Message(),
_internal_metadata_(nullptr) {
_internal_metadata_.MergeFrom(from._internal_metadata_);
status_ = from.status_;
clear_has_call();
switch (from.call_case()) {
case kGene: {
mutable_gene()->::org::phenopackets::schema::v1::core::Gene::MergeFrom(from.gene());
break;
}
case kVariant: {
mutable_variant()->::org::phenopackets::schema::v1::core::Variant::MergeFrom(from.variant());
break;
}
case CALL_NOT_SET: {
break;
}
}
// @@protoc_insertion_point(copy_constructor:org.phenopackets.schema.v1.GenomicInterpretation)
}
void GenomicInterpretation::SharedCtor() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&scc_info_GenomicInterpretation_interpretation_2eproto.base);
status_ = 0;
clear_has_call();
}
GenomicInterpretation::~GenomicInterpretation() {
// @@protoc_insertion_point(destructor:org.phenopackets.schema.v1.GenomicInterpretation)
SharedDtor();
}
void GenomicInterpretation::SharedDtor() {
if (has_call()) {
clear_call();
}
}
void GenomicInterpretation::SetCachedSize(int size) const {
_cached_size_.Set(size);
}
const GenomicInterpretation& GenomicInterpretation::default_instance() {
::PROTOBUF_NAMESPACE_ID::internal::InitSCC(&::scc_info_GenomicInterpretation_interpretation_2eproto.base);
return *internal_default_instance();
}
void GenomicInterpretation::clear_call() {
// @@protoc_insertion_point(one_of_clear_start:org.phenopackets.schema.v1.GenomicInterpretation)
switch (call_case()) {
case kGene: {
delete call_.gene_;
break;
}
case kVariant: {
delete call_.variant_;
break;
}
case CALL_NOT_SET: {
break;
}
}
_oneof_case_[0] = CALL_NOT_SET;
}
void GenomicInterpretation::Clear() {
// @@protoc_insertion_point(message_clear_start:org.phenopackets.schema.v1.GenomicInterpretation)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
status_ = 0;
clear_call();
_internal_metadata_.Clear();
}
#if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
const char* GenomicInterpretation::_InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) {
#define CHK_(x) if (PROTOBUF_PREDICT_FALSE(!(x))) goto failure
while (!ctx->Done(&ptr)) {
::PROTOBUF_NAMESPACE_ID::uint32 tag;
ptr = ::PROTOBUF_NAMESPACE_ID::internal::ReadTag(ptr, &tag);
CHK_(ptr);
switch (tag >> 3) {
// .org.phenopackets.schema.v1.GenomicInterpretation.Status status = 1;
case 1:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 8)) {
::PROTOBUF_NAMESPACE_ID::uint64 val = ::PROTOBUF_NAMESPACE_ID::internal::ReadVarint(&ptr);
CHK_(ptr);
set_status(static_cast<::org::phenopackets::schema::v1::GenomicInterpretation_Status>(val));
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.Gene gene = 2;
case 2:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 18)) {
ptr = ctx->ParseMessage(mutable_gene(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
// .org.phenopackets.schema.v1.core.Variant variant = 3;
case 3:
if (PROTOBUF_PREDICT_TRUE(static_cast<::PROTOBUF_NAMESPACE_ID::uint8>(tag) == 26)) {
ptr = ctx->ParseMessage(mutable_variant(), ptr);
CHK_(ptr);
} else goto handle_unusual;
continue;
default: {
handle_unusual:
if ((tag & 7) == 4 || tag == 0) {
ctx->SetLastTag(tag);
goto success;
}
ptr = UnknownFieldParse(tag, &_internal_metadata_, ptr, ctx);
CHK_(ptr != nullptr);
continue;
}
} // switch
} // while
success:
return ptr;
failure:
ptr = nullptr;
goto success;
#undef CHK_
}
#else // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
bool GenomicInterpretation::MergePartialFromCodedStream(
::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) {
#define DO_(EXPRESSION) if (!PROTOBUF_PREDICT_TRUE(EXPRESSION)) goto failure
::PROTOBUF_NAMESPACE_ID::uint32 tag;
// @@protoc_insertion_point(parse_start:org.phenopackets.schema.v1.GenomicInterpretation)
for (;;) {
::std::pair<::PROTOBUF_NAMESPACE_ID::uint32, bool> p = input->ReadTagWithCutoffNoLastTag(127u);
tag = p.first;
if (!p.second) goto handle_unusual;
switch (::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::GetTagFieldNumber(tag)) {
// .org.phenopackets.schema.v1.GenomicInterpretation.Status status = 1;
case 1: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (8 & 0xFF)) {
int value = 0;
DO_((::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadPrimitive<
int, ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::TYPE_ENUM>(
input, &value)));
set_status(static_cast< ::org::phenopackets::schema::v1::GenomicInterpretation_Status >(value));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.Gene gene = 2;
case 2: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (18 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_gene()));
} else {
goto handle_unusual;
}
break;
}
// .org.phenopackets.schema.v1.core.Variant variant = 3;
case 3: {
if (static_cast< ::PROTOBUF_NAMESPACE_ID::uint8>(tag) == (26 & 0xFF)) {
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::ReadMessage(
input, mutable_variant()));
} else {
goto handle_unusual;
}
break;
}
default: {
handle_unusual:
if (tag == 0) {
goto success;
}
DO_(::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SkipField(
input, tag, _internal_metadata_.mutable_unknown_fields()));
break;
}
}
}
success:
// @@protoc_insertion_point(parse_success:org.phenopackets.schema.v1.GenomicInterpretation)
return true;
failure:
// @@protoc_insertion_point(parse_failure:org.phenopackets.schema.v1.GenomicInterpretation)
return false;
#undef DO_
}
#endif // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
void GenomicInterpretation::SerializeWithCachedSizes(
::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const {
// @@protoc_insertion_point(serialize_start:org.phenopackets.schema.v1.GenomicInterpretation)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .org.phenopackets.schema.v1.GenomicInterpretation.Status status = 1;
if (this->status() != 0) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteEnum(
1, this->status(), output);
}
// .org.phenopackets.schema.v1.core.Gene gene = 2;
if (has_gene()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
2, HasBitSetters::gene(this), output);
}
// .org.phenopackets.schema.v1.core.Variant variant = 3;
if (has_variant()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteMessageMaybeToArray(
3, HasBitSetters::variant(this), output);
}
if (_internal_metadata_.have_unknown_fields()) {
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFields(
_internal_metadata_.unknown_fields(), output);
}
// @@protoc_insertion_point(serialize_end:org.phenopackets.schema.v1.GenomicInterpretation)
}
::PROTOBUF_NAMESPACE_ID::uint8* GenomicInterpretation::InternalSerializeWithCachedSizesToArray(
::PROTOBUF_NAMESPACE_ID::uint8* target) const {
// @@protoc_insertion_point(serialize_to_array_start:org.phenopackets.schema.v1.GenomicInterpretation)
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
// .org.phenopackets.schema.v1.GenomicInterpretation.Status status = 1;
if (this->status() != 0) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::WriteEnumToArray(
1, this->status(), target);
}
// .org.phenopackets.schema.v1.core.Gene gene = 2;
if (has_gene()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
2, HasBitSetters::gene(this), target);
}
// .org.phenopackets.schema.v1.core.Variant variant = 3;
if (has_variant()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::
InternalWriteMessageToArray(
3, HasBitSetters::variant(this), target);
}
if (_internal_metadata_.have_unknown_fields()) {
target = ::PROTOBUF_NAMESPACE_ID::internal::WireFormat::SerializeUnknownFieldsToArray(
_internal_metadata_.unknown_fields(), target);
}
// @@protoc_insertion_point(serialize_to_array_end:org.phenopackets.schema.v1.GenomicInterpretation)
return target;
}
size_t GenomicInterpretation::ByteSizeLong() const {
// @@protoc_insertion_point(message_byte_size_start:org.phenopackets.schema.v1.GenomicInterpretation)
size_t total_size = 0;
if (_internal_metadata_.have_unknown_fields()) {
total_size +=
::PROTOBUF_NAMESPACE_ID::internal::WireFormat::ComputeUnknownFieldsSize(
_internal_metadata_.unknown_fields());
}
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
// Prevent compiler warnings about cached_has_bits being unused
(void) cached_has_bits;
// .org.phenopackets.schema.v1.GenomicInterpretation.Status status = 1;
if (this->status() != 0) {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::EnumSize(this->status());
}
switch (call_case()) {
// .org.phenopackets.schema.v1.core.Gene gene = 2;
case kGene: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*call_.gene_);
break;
}
// .org.phenopackets.schema.v1.core.Variant variant = 3;
case kVariant: {
total_size += 1 +
::PROTOBUF_NAMESPACE_ID::internal::WireFormatLite::MessageSize(
*call_.variant_);
break;
}
case CALL_NOT_SET: {
break;
}
}
int cached_size = ::PROTOBUF_NAMESPACE_ID::internal::ToCachedSize(total_size);
SetCachedSize(cached_size);
return total_size;
}
void GenomicInterpretation::MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_merge_from_start:org.phenopackets.schema.v1.GenomicInterpretation)
GOOGLE_DCHECK_NE(&from, this);
const GenomicInterpretation* source =
::PROTOBUF_NAMESPACE_ID::DynamicCastToGenerated(
&from);
if (source == nullptr) {
// @@protoc_insertion_point(generalized_merge_from_cast_fail:org.phenopackets.schema.v1.GenomicInterpretation)
::PROTOBUF_NAMESPACE_ID::internal::ReflectionOps::Merge(from, this);
} else {
// @@protoc_insertion_point(generalized_merge_from_cast_success:org.phenopackets.schema.v1.GenomicInterpretation)
MergeFrom(*source);
}
}
void GenomicInterpretation::MergeFrom(const GenomicInterpretation& from) {
// @@protoc_insertion_point(class_specific_merge_from_start:org.phenopackets.schema.v1.GenomicInterpretation)
GOOGLE_DCHECK_NE(&from, this);
_internal_metadata_.MergeFrom(from._internal_metadata_);
::PROTOBUF_NAMESPACE_ID::uint32 cached_has_bits = 0;
(void) cached_has_bits;
if (from.status() != 0) {
set_status(from.status());
}
switch (from.call_case()) {
case kGene: {
mutable_gene()->::org::phenopackets::schema::v1::core::Gene::MergeFrom(from.gene());
break;
}
case kVariant: {
mutable_variant()->::org::phenopackets::schema::v1::core::Variant::MergeFrom(from.variant());
break;
}
case CALL_NOT_SET: {
break;
}
}
}
void GenomicInterpretation::CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) {
// @@protoc_insertion_point(generalized_copy_from_start:org.phenopackets.schema.v1.GenomicInterpretation)
if (&from == this) return;
Clear();
MergeFrom(from);
}
void GenomicInterpretation::CopyFrom(const GenomicInterpretation& from) {
// @@protoc_insertion_point(class_specific_copy_from_start:org.phenopackets.schema.v1.GenomicInterpretation)
if (&from == this) return;
Clear();
MergeFrom(from);
}
bool GenomicInterpretation::IsInitialized() const {
return true;
}
void GenomicInterpretation::Swap(GenomicInterpretation* other) {
if (other == this) return;
InternalSwap(other);
}
void GenomicInterpretation::InternalSwap(GenomicInterpretation* other) {
using std::swap;
_internal_metadata_.Swap(&other->_internal_metadata_);
swap(status_, other->status_);
swap(call_, other->call_);
swap(_oneof_case_[0], other->_oneof_case_[0]);
}
::PROTOBUF_NAMESPACE_ID::Metadata GenomicInterpretation::GetMetadata() const {
return GetMetadataStatic();
}
// @@protoc_insertion_point(namespace_scope)
} // namespace v1
} // namespace schema
} // namespace phenopackets
} // namespace org
PROTOBUF_NAMESPACE_OPEN
template<> PROTOBUF_NOINLINE ::org::phenopackets::schema::v1::Interpretation* Arena::CreateMaybeMessage< ::org::phenopackets::schema::v1::Interpretation >(Arena* arena) {
return Arena::CreateInternal< ::org::phenopackets::schema::v1::Interpretation >(arena);
}
template<> PROTOBUF_NOINLINE ::org::phenopackets::schema::v1::Diagnosis* Arena::CreateMaybeMessage< ::org::phenopackets::schema::v1::Diagnosis >(Arena* arena) {
return Arena::CreateInternal< ::org::phenopackets::schema::v1::Diagnosis >(arena);
}
template<> PROTOBUF_NOINLINE ::org::phenopackets::schema::v1::GenomicInterpretation* Arena::CreateMaybeMessage< ::org::phenopackets::schema::v1::GenomicInterpretation >(Arena* arena) {
return Arena::CreateInternal< ::org::phenopackets::schema::v1::GenomicInterpretation >(arena);
}
PROTOBUF_NAMESPACE_CLOSE
// @@protoc_insertion_point(global_scope)
#include