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ets.phenopacket-schema.1.0.0-RC3.source-code.phenopackets.pb.h Maven / Gradle / Ivy

// Generated by the protocol buffer compiler.  DO NOT EDIT!
// source: phenopackets.proto

#ifndef GOOGLE_PROTOBUF_INCLUDED_phenopackets_2eproto
#define GOOGLE_PROTOBUF_INCLUDED_phenopackets_2eproto

#include 
#include 

#include 
#if PROTOBUF_VERSION < 3008000
#error This file was generated by a newer version of protoc which is
#error incompatible with your Protocol Buffer headers. Please update
#error your headers.
#endif
#if 3008000 < PROTOBUF_MIN_PROTOC_VERSION
#error This file was generated by an older version of protoc which is
#error incompatible with your Protocol Buffer headers. Please
#error regenerate this file with a newer version of protoc.
#endif

#include 
#include 
#include 
#include 
#include 
#include 
#include 
#include 
#include 
#include 
#include   // IWYU pragma: export
#include   // IWYU pragma: export
#include 
#include "base.pb.h"
// @@protoc_insertion_point(includes)
#include 
#define PROTOBUF_INTERNAL_EXPORT_phenopackets_2eproto
PROTOBUF_NAMESPACE_OPEN
namespace internal {
class AnyMetadata;
}  // namespace internal
PROTOBUF_NAMESPACE_CLOSE

// Internal implementation detail -- do not use these members.
struct TableStruct_phenopackets_2eproto {
  static const ::PROTOBUF_NAMESPACE_ID::internal::ParseTableField entries[]
    PROTOBUF_SECTION_VARIABLE(protodesc_cold);
  static const ::PROTOBUF_NAMESPACE_ID::internal::AuxillaryParseTableField aux[]
    PROTOBUF_SECTION_VARIABLE(protodesc_cold);
  static const ::PROTOBUF_NAMESPACE_ID::internal::ParseTable schema[3]
    PROTOBUF_SECTION_VARIABLE(protodesc_cold);
  static const ::PROTOBUF_NAMESPACE_ID::internal::FieldMetadata field_metadata[];
  static const ::PROTOBUF_NAMESPACE_ID::internal::SerializationTable serialization_table[];
  static const ::PROTOBUF_NAMESPACE_ID::uint32 offsets[];
};
extern const ::PROTOBUF_NAMESPACE_ID::internal::DescriptorTable descriptor_table_phenopackets_2eproto;
namespace org {
namespace phenopackets {
namespace schema {
namespace v1 {
class Cohort;
class CohortDefaultTypeInternal;
extern CohortDefaultTypeInternal _Cohort_default_instance_;
class Family;
class FamilyDefaultTypeInternal;
extern FamilyDefaultTypeInternal _Family_default_instance_;
class Phenopacket;
class PhenopacketDefaultTypeInternal;
extern PhenopacketDefaultTypeInternal _Phenopacket_default_instance_;
}  // namespace v1
}  // namespace schema
}  // namespace phenopackets
}  // namespace org
PROTOBUF_NAMESPACE_OPEN
template<> ::org::phenopackets::schema::v1::Cohort* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::Cohort>(Arena*);
template<> ::org::phenopackets::schema::v1::Family* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::Family>(Arena*);
template<> ::org::phenopackets::schema::v1::Phenopacket* Arena::CreateMaybeMessage<::org::phenopackets::schema::v1::Phenopacket>(Arena*);
PROTOBUF_NAMESPACE_CLOSE
namespace org {
namespace phenopackets {
namespace schema {
namespace v1 {

// ===================================================================

class Phenopacket :
    public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.Phenopacket) */ {
 public:
  Phenopacket();
  virtual ~Phenopacket();

  Phenopacket(const Phenopacket& from);
  Phenopacket(Phenopacket&& from) noexcept
    : Phenopacket() {
    *this = ::std::move(from);
  }

  inline Phenopacket& operator=(const Phenopacket& from) {
    CopyFrom(from);
    return *this;
  }
  inline Phenopacket& operator=(Phenopacket&& from) noexcept {
    if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
      if (this != &from) InternalSwap(&from);
    } else {
      CopyFrom(from);
    }
    return *this;
  }

  static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
    return GetDescriptor();
  }
  static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
    return GetMetadataStatic().descriptor;
  }
  static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
    return GetMetadataStatic().reflection;
  }
  static const Phenopacket& default_instance();

  static void InitAsDefaultInstance();  // FOR INTERNAL USE ONLY
  static inline const Phenopacket* internal_default_instance() {
    return reinterpret_cast(
               &_Phenopacket_default_instance_);
  }
  static constexpr int kIndexInFileMessages =
    0;

  void Swap(Phenopacket* other);
  friend void swap(Phenopacket& a, Phenopacket& b) {
    a.Swap(&b);
  }

  // implements Message ----------------------------------------------

  inline Phenopacket* New() const final {
    return CreateMaybeMessage(nullptr);
  }

  Phenopacket* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
    return CreateMaybeMessage(arena);
  }
  void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
  void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
  void CopyFrom(const Phenopacket& from);
  void MergeFrom(const Phenopacket& from);
  PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
  bool IsInitialized() const final;

  size_t ByteSizeLong() const final;
  #if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
  const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
  #else
  bool MergePartialFromCodedStream(
      ::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
  #endif  // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
  void SerializeWithCachedSizes(
      ::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
  ::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
      ::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
  int GetCachedSize() const final { return _cached_size_.Get(); }

  private:
  inline void SharedCtor();
  inline void SharedDtor();
  void SetCachedSize(int size) const final;
  void InternalSwap(Phenopacket* other);
  friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
  static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
    return "org.phenopackets.schema.v1.Phenopacket";
  }
  private:
  inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
    return nullptr;
  }
  inline void* MaybeArenaPtr() const {
    return nullptr;
  }
  public:

  ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
  private:
  static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
    ::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_phenopackets_2eproto);
    return ::descriptor_table_phenopackets_2eproto.file_level_metadata[kIndexInFileMessages];
  }

  public:

  // nested types ----------------------------------------------------

  // accessors -------------------------------------------------------

  // repeated .org.phenopackets.schema.v1.core.PhenotypicFeature phenotypic_features = 3;
  int phenotypic_features_size() const;
  void clear_phenotypic_features();
  static const int kPhenotypicFeaturesFieldNumber = 3;
  ::org::phenopackets::schema::v1::core::PhenotypicFeature* mutable_phenotypic_features(int index);
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::PhenotypicFeature >*
      mutable_phenotypic_features();
  const ::org::phenopackets::schema::v1::core::PhenotypicFeature& phenotypic_features(int index) const;
  ::org::phenopackets::schema::v1::core::PhenotypicFeature* add_phenotypic_features();
  const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::PhenotypicFeature >&
      phenotypic_features() const;

  // repeated .org.phenopackets.schema.v1.core.Biosample biosamples = 4;
  int biosamples_size() const;
  void clear_biosamples();
  static const int kBiosamplesFieldNumber = 4;
  ::org::phenopackets::schema::v1::core::Biosample* mutable_biosamples(int index);
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Biosample >*
      mutable_biosamples();
  const ::org::phenopackets::schema::v1::core::Biosample& biosamples(int index) const;
  ::org::phenopackets::schema::v1::core::Biosample* add_biosamples();
  const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Biosample >&
      biosamples() const;

  // repeated .org.phenopackets.schema.v1.core.Gene genes = 5;
  int genes_size() const;
  void clear_genes();
  static const int kGenesFieldNumber = 5;
  ::org::phenopackets::schema::v1::core::Gene* mutable_genes(int index);
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Gene >*
      mutable_genes();
  const ::org::phenopackets::schema::v1::core::Gene& genes(int index) const;
  ::org::phenopackets::schema::v1::core::Gene* add_genes();
  const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Gene >&
      genes() const;

  // repeated .org.phenopackets.schema.v1.core.Variant variants = 6;
  int variants_size() const;
  void clear_variants();
  static const int kVariantsFieldNumber = 6;
  ::org::phenopackets::schema::v1::core::Variant* mutable_variants(int index);
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Variant >*
      mutable_variants();
  const ::org::phenopackets::schema::v1::core::Variant& variants(int index) const;
  ::org::phenopackets::schema::v1::core::Variant* add_variants();
  const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Variant >&
      variants() const;

  // repeated .org.phenopackets.schema.v1.core.Disease diseases = 7;
  int diseases_size() const;
  void clear_diseases();
  static const int kDiseasesFieldNumber = 7;
  ::org::phenopackets::schema::v1::core::Disease* mutable_diseases(int index);
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Disease >*
      mutable_diseases();
  const ::org::phenopackets::schema::v1::core::Disease& diseases(int index) const;
  ::org::phenopackets::schema::v1::core::Disease* add_diseases();
  const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Disease >&
      diseases() const;

  // repeated .org.phenopackets.schema.v1.core.HtsFile hts_files = 8;
  int hts_files_size() const;
  void clear_hts_files();
  static const int kHtsFilesFieldNumber = 8;
  ::org::phenopackets::schema::v1::core::HtsFile* mutable_hts_files(int index);
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >*
      mutable_hts_files();
  const ::org::phenopackets::schema::v1::core::HtsFile& hts_files(int index) const;
  ::org::phenopackets::schema::v1::core::HtsFile* add_hts_files();
  const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >&
      hts_files() const;

  // string id = 1;
  void clear_id();
  static const int kIdFieldNumber = 1;
  const std::string& id() const;
  void set_id(const std::string& value);
  void set_id(std::string&& value);
  void set_id(const char* value);
  void set_id(const char* value, size_t size);
  std::string* mutable_id();
  std::string* release_id();
  void set_allocated_id(std::string* id);

  // .org.phenopackets.schema.v1.core.Individual subject = 2;
  bool has_subject() const;
  void clear_subject();
  static const int kSubjectFieldNumber = 2;
  const ::org::phenopackets::schema::v1::core::Individual& subject() const;
  ::org::phenopackets::schema::v1::core::Individual* release_subject();
  ::org::phenopackets::schema::v1::core::Individual* mutable_subject();
  void set_allocated_subject(::org::phenopackets::schema::v1::core::Individual* subject);

  // .org.phenopackets.schema.v1.core.MetaData meta_data = 9;
  bool has_meta_data() const;
  void clear_meta_data();
  static const int kMetaDataFieldNumber = 9;
  const ::org::phenopackets::schema::v1::core::MetaData& meta_data() const;
  ::org::phenopackets::schema::v1::core::MetaData* release_meta_data();
  ::org::phenopackets::schema::v1::core::MetaData* mutable_meta_data();
  void set_allocated_meta_data(::org::phenopackets::schema::v1::core::MetaData* meta_data);

  // @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.Phenopacket)
 private:
  class HasBitSetters;

  ::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::PhenotypicFeature > phenotypic_features_;
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Biosample > biosamples_;
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Gene > genes_;
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Variant > variants_;
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Disease > diseases_;
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile > hts_files_;
  ::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr id_;
  ::org::phenopackets::schema::v1::core::Individual* subject_;
  ::org::phenopackets::schema::v1::core::MetaData* meta_data_;
  mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
  friend struct ::TableStruct_phenopackets_2eproto;
};
// -------------------------------------------------------------------

class Family :
    public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.Family) */ {
 public:
  Family();
  virtual ~Family();

  Family(const Family& from);
  Family(Family&& from) noexcept
    : Family() {
    *this = ::std::move(from);
  }

  inline Family& operator=(const Family& from) {
    CopyFrom(from);
    return *this;
  }
  inline Family& operator=(Family&& from) noexcept {
    if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
      if (this != &from) InternalSwap(&from);
    } else {
      CopyFrom(from);
    }
    return *this;
  }

  static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
    return GetDescriptor();
  }
  static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
    return GetMetadataStatic().descriptor;
  }
  static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
    return GetMetadataStatic().reflection;
  }
  static const Family& default_instance();

  static void InitAsDefaultInstance();  // FOR INTERNAL USE ONLY
  static inline const Family* internal_default_instance() {
    return reinterpret_cast(
               &_Family_default_instance_);
  }
  static constexpr int kIndexInFileMessages =
    1;

  void Swap(Family* other);
  friend void swap(Family& a, Family& b) {
    a.Swap(&b);
  }

  // implements Message ----------------------------------------------

  inline Family* New() const final {
    return CreateMaybeMessage(nullptr);
  }

  Family* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
    return CreateMaybeMessage(arena);
  }
  void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
  void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
  void CopyFrom(const Family& from);
  void MergeFrom(const Family& from);
  PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
  bool IsInitialized() const final;

  size_t ByteSizeLong() const final;
  #if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
  const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
  #else
  bool MergePartialFromCodedStream(
      ::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
  #endif  // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
  void SerializeWithCachedSizes(
      ::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
  ::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
      ::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
  int GetCachedSize() const final { return _cached_size_.Get(); }

  private:
  inline void SharedCtor();
  inline void SharedDtor();
  void SetCachedSize(int size) const final;
  void InternalSwap(Family* other);
  friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
  static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
    return "org.phenopackets.schema.v1.Family";
  }
  private:
  inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
    return nullptr;
  }
  inline void* MaybeArenaPtr() const {
    return nullptr;
  }
  public:

  ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
  private:
  static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
    ::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_phenopackets_2eproto);
    return ::descriptor_table_phenopackets_2eproto.file_level_metadata[kIndexInFileMessages];
  }

  public:

  // nested types ----------------------------------------------------

  // accessors -------------------------------------------------------

  // repeated .org.phenopackets.schema.v1.Phenopacket relatives = 3;
  int relatives_size() const;
  void clear_relatives();
  static const int kRelativesFieldNumber = 3;
  ::org::phenopackets::schema::v1::Phenopacket* mutable_relatives(int index);
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::Phenopacket >*
      mutable_relatives();
  const ::org::phenopackets::schema::v1::Phenopacket& relatives(int index) const;
  ::org::phenopackets::schema::v1::Phenopacket* add_relatives();
  const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::Phenopacket >&
      relatives() const;

  // repeated .org.phenopackets.schema.v1.core.HtsFile hts_files = 5;
  int hts_files_size() const;
  void clear_hts_files();
  static const int kHtsFilesFieldNumber = 5;
  ::org::phenopackets::schema::v1::core::HtsFile* mutable_hts_files(int index);
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >*
      mutable_hts_files();
  const ::org::phenopackets::schema::v1::core::HtsFile& hts_files(int index) const;
  ::org::phenopackets::schema::v1::core::HtsFile* add_hts_files();
  const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >&
      hts_files() const;

  // string id = 1;
  void clear_id();
  static const int kIdFieldNumber = 1;
  const std::string& id() const;
  void set_id(const std::string& value);
  void set_id(std::string&& value);
  void set_id(const char* value);
  void set_id(const char* value, size_t size);
  std::string* mutable_id();
  std::string* release_id();
  void set_allocated_id(std::string* id);

  // .org.phenopackets.schema.v1.Phenopacket proband = 2;
  bool has_proband() const;
  void clear_proband();
  static const int kProbandFieldNumber = 2;
  const ::org::phenopackets::schema::v1::Phenopacket& proband() const;
  ::org::phenopackets::schema::v1::Phenopacket* release_proband();
  ::org::phenopackets::schema::v1::Phenopacket* mutable_proband();
  void set_allocated_proband(::org::phenopackets::schema::v1::Phenopacket* proband);

  // .org.phenopackets.schema.v1.core.Pedigree pedigree = 4;
  bool has_pedigree() const;
  void clear_pedigree();
  static const int kPedigreeFieldNumber = 4;
  const ::org::phenopackets::schema::v1::core::Pedigree& pedigree() const;
  ::org::phenopackets::schema::v1::core::Pedigree* release_pedigree();
  ::org::phenopackets::schema::v1::core::Pedigree* mutable_pedigree();
  void set_allocated_pedigree(::org::phenopackets::schema::v1::core::Pedigree* pedigree);

  // .org.phenopackets.schema.v1.core.MetaData meta_data = 6;
  bool has_meta_data() const;
  void clear_meta_data();
  static const int kMetaDataFieldNumber = 6;
  const ::org::phenopackets::schema::v1::core::MetaData& meta_data() const;
  ::org::phenopackets::schema::v1::core::MetaData* release_meta_data();
  ::org::phenopackets::schema::v1::core::MetaData* mutable_meta_data();
  void set_allocated_meta_data(::org::phenopackets::schema::v1::core::MetaData* meta_data);

  // @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.Family)
 private:
  class HasBitSetters;

  ::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::Phenopacket > relatives_;
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile > hts_files_;
  ::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr id_;
  ::org::phenopackets::schema::v1::Phenopacket* proband_;
  ::org::phenopackets::schema::v1::core::Pedigree* pedigree_;
  ::org::phenopackets::schema::v1::core::MetaData* meta_data_;
  mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
  friend struct ::TableStruct_phenopackets_2eproto;
};
// -------------------------------------------------------------------

class Cohort :
    public ::PROTOBUF_NAMESPACE_ID::Message /* @@protoc_insertion_point(class_definition:org.phenopackets.schema.v1.Cohort) */ {
 public:
  Cohort();
  virtual ~Cohort();

  Cohort(const Cohort& from);
  Cohort(Cohort&& from) noexcept
    : Cohort() {
    *this = ::std::move(from);
  }

  inline Cohort& operator=(const Cohort& from) {
    CopyFrom(from);
    return *this;
  }
  inline Cohort& operator=(Cohort&& from) noexcept {
    if (GetArenaNoVirtual() == from.GetArenaNoVirtual()) {
      if (this != &from) InternalSwap(&from);
    } else {
      CopyFrom(from);
    }
    return *this;
  }

  static const ::PROTOBUF_NAMESPACE_ID::Descriptor* descriptor() {
    return GetDescriptor();
  }
  static const ::PROTOBUF_NAMESPACE_ID::Descriptor* GetDescriptor() {
    return GetMetadataStatic().descriptor;
  }
  static const ::PROTOBUF_NAMESPACE_ID::Reflection* GetReflection() {
    return GetMetadataStatic().reflection;
  }
  static const Cohort& default_instance();

  static void InitAsDefaultInstance();  // FOR INTERNAL USE ONLY
  static inline const Cohort* internal_default_instance() {
    return reinterpret_cast(
               &_Cohort_default_instance_);
  }
  static constexpr int kIndexInFileMessages =
    2;

  void Swap(Cohort* other);
  friend void swap(Cohort& a, Cohort& b) {
    a.Swap(&b);
  }

  // implements Message ----------------------------------------------

  inline Cohort* New() const final {
    return CreateMaybeMessage(nullptr);
  }

  Cohort* New(::PROTOBUF_NAMESPACE_ID::Arena* arena) const final {
    return CreateMaybeMessage(arena);
  }
  void CopyFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
  void MergeFrom(const ::PROTOBUF_NAMESPACE_ID::Message& from) final;
  void CopyFrom(const Cohort& from);
  void MergeFrom(const Cohort& from);
  PROTOBUF_ATTRIBUTE_REINITIALIZES void Clear() final;
  bool IsInitialized() const final;

  size_t ByteSizeLong() const final;
  #if GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
  const char* _InternalParse(const char* ptr, ::PROTOBUF_NAMESPACE_ID::internal::ParseContext* ctx) final;
  #else
  bool MergePartialFromCodedStream(
      ::PROTOBUF_NAMESPACE_ID::io::CodedInputStream* input) final;
  #endif  // GOOGLE_PROTOBUF_ENABLE_EXPERIMENTAL_PARSER
  void SerializeWithCachedSizes(
      ::PROTOBUF_NAMESPACE_ID::io::CodedOutputStream* output) const final;
  ::PROTOBUF_NAMESPACE_ID::uint8* InternalSerializeWithCachedSizesToArray(
      ::PROTOBUF_NAMESPACE_ID::uint8* target) const final;
  int GetCachedSize() const final { return _cached_size_.Get(); }

  private:
  inline void SharedCtor();
  inline void SharedDtor();
  void SetCachedSize(int size) const final;
  void InternalSwap(Cohort* other);
  friend class ::PROTOBUF_NAMESPACE_ID::internal::AnyMetadata;
  static ::PROTOBUF_NAMESPACE_ID::StringPiece FullMessageName() {
    return "org.phenopackets.schema.v1.Cohort";
  }
  private:
  inline ::PROTOBUF_NAMESPACE_ID::Arena* GetArenaNoVirtual() const {
    return nullptr;
  }
  inline void* MaybeArenaPtr() const {
    return nullptr;
  }
  public:

  ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadata() const final;
  private:
  static ::PROTOBUF_NAMESPACE_ID::Metadata GetMetadataStatic() {
    ::PROTOBUF_NAMESPACE_ID::internal::AssignDescriptors(&::descriptor_table_phenopackets_2eproto);
    return ::descriptor_table_phenopackets_2eproto.file_level_metadata[kIndexInFileMessages];
  }

  public:

  // nested types ----------------------------------------------------

  // accessors -------------------------------------------------------

  // repeated .org.phenopackets.schema.v1.Phenopacket members = 3;
  int members_size() const;
  void clear_members();
  static const int kMembersFieldNumber = 3;
  ::org::phenopackets::schema::v1::Phenopacket* mutable_members(int index);
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::Phenopacket >*
      mutable_members();
  const ::org::phenopackets::schema::v1::Phenopacket& members(int index) const;
  ::org::phenopackets::schema::v1::Phenopacket* add_members();
  const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::Phenopacket >&
      members() const;

  // repeated .org.phenopackets.schema.v1.core.HtsFile hts_files = 4;
  int hts_files_size() const;
  void clear_hts_files();
  static const int kHtsFilesFieldNumber = 4;
  ::org::phenopackets::schema::v1::core::HtsFile* mutable_hts_files(int index);
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >*
      mutable_hts_files();
  const ::org::phenopackets::schema::v1::core::HtsFile& hts_files(int index) const;
  ::org::phenopackets::schema::v1::core::HtsFile* add_hts_files();
  const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >&
      hts_files() const;

  // string id = 1;
  void clear_id();
  static const int kIdFieldNumber = 1;
  const std::string& id() const;
  void set_id(const std::string& value);
  void set_id(std::string&& value);
  void set_id(const char* value);
  void set_id(const char* value, size_t size);
  std::string* mutable_id();
  std::string* release_id();
  void set_allocated_id(std::string* id);

  // string description = 2;
  void clear_description();
  static const int kDescriptionFieldNumber = 2;
  const std::string& description() const;
  void set_description(const std::string& value);
  void set_description(std::string&& value);
  void set_description(const char* value);
  void set_description(const char* value, size_t size);
  std::string* mutable_description();
  std::string* release_description();
  void set_allocated_description(std::string* description);

  // .org.phenopackets.schema.v1.core.MetaData meta_data = 5;
  bool has_meta_data() const;
  void clear_meta_data();
  static const int kMetaDataFieldNumber = 5;
  const ::org::phenopackets::schema::v1::core::MetaData& meta_data() const;
  ::org::phenopackets::schema::v1::core::MetaData* release_meta_data();
  ::org::phenopackets::schema::v1::core::MetaData* mutable_meta_data();
  void set_allocated_meta_data(::org::phenopackets::schema::v1::core::MetaData* meta_data);

  // @@protoc_insertion_point(class_scope:org.phenopackets.schema.v1.Cohort)
 private:
  class HasBitSetters;

  ::PROTOBUF_NAMESPACE_ID::internal::InternalMetadataWithArena _internal_metadata_;
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::Phenopacket > members_;
  ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile > hts_files_;
  ::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr id_;
  ::PROTOBUF_NAMESPACE_ID::internal::ArenaStringPtr description_;
  ::org::phenopackets::schema::v1::core::MetaData* meta_data_;
  mutable ::PROTOBUF_NAMESPACE_ID::internal::CachedSize _cached_size_;
  friend struct ::TableStruct_phenopackets_2eproto;
};
// ===================================================================


// ===================================================================

#ifdef __GNUC__
  #pragma GCC diagnostic push
  #pragma GCC diagnostic ignored "-Wstrict-aliasing"
#endif  // __GNUC__
// Phenopacket

// string id = 1;
inline void Phenopacket::clear_id() {
  id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Phenopacket::id() const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Phenopacket.id)
  return id_.GetNoArena();
}
inline void Phenopacket::set_id(const std::string& value) {
  
  id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
  // @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.Phenopacket.id)
}
inline void Phenopacket::set_id(std::string&& value) {
  
  id_.SetNoArena(
    &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
  // @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.Phenopacket.id)
}
inline void Phenopacket::set_id(const char* value) {
  GOOGLE_DCHECK(value != nullptr);
  
  id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
  // @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.Phenopacket.id)
}
inline void Phenopacket::set_id(const char* value, size_t size) {
  
  id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
      ::std::string(reinterpret_cast(value), size));
  // @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.Phenopacket.id)
}
inline std::string* Phenopacket::mutable_id() {
  
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Phenopacket.id)
  return id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Phenopacket::release_id() {
  // @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.Phenopacket.id)
  
  return id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Phenopacket::set_allocated_id(std::string* id) {
  if (id != nullptr) {
    
  } else {
    
  }
  id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), id);
  // @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.Phenopacket.id)
}

// .org.phenopackets.schema.v1.core.Individual subject = 2;
inline bool Phenopacket::has_subject() const {
  return this != internal_default_instance() && subject_ != nullptr;
}
inline const ::org::phenopackets::schema::v1::core::Individual& Phenopacket::subject() const {
  const ::org::phenopackets::schema::v1::core::Individual* p = subject_;
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Phenopacket.subject)
  return p != nullptr ? *p : *reinterpret_cast(
      &::org::phenopackets::schema::v1::core::_Individual_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::Individual* Phenopacket::release_subject() {
  // @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.Phenopacket.subject)
  
  ::org::phenopackets::schema::v1::core::Individual* temp = subject_;
  subject_ = nullptr;
  return temp;
}
inline ::org::phenopackets::schema::v1::core::Individual* Phenopacket::mutable_subject() {
  
  if (subject_ == nullptr) {
    auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::Individual>(GetArenaNoVirtual());
    subject_ = p;
  }
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Phenopacket.subject)
  return subject_;
}
inline void Phenopacket::set_allocated_subject(::org::phenopackets::schema::v1::core::Individual* subject) {
  ::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
  if (message_arena == nullptr) {
    delete reinterpret_cast< ::PROTOBUF_NAMESPACE_ID::MessageLite*>(subject_);
  }
  if (subject) {
    ::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
    if (message_arena != submessage_arena) {
      subject = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
          message_arena, subject, submessage_arena);
    }
    
  } else {
    
  }
  subject_ = subject;
  // @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.Phenopacket.subject)
}

// repeated .org.phenopackets.schema.v1.core.PhenotypicFeature phenotypic_features = 3;
inline int Phenopacket::phenotypic_features_size() const {
  return phenotypic_features_.size();
}
inline ::org::phenopackets::schema::v1::core::PhenotypicFeature* Phenopacket::mutable_phenotypic_features(int index) {
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Phenopacket.phenotypic_features)
  return phenotypic_features_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::PhenotypicFeature >*
Phenopacket::mutable_phenotypic_features() {
  // @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.Phenopacket.phenotypic_features)
  return &phenotypic_features_;
}
inline const ::org::phenopackets::schema::v1::core::PhenotypicFeature& Phenopacket::phenotypic_features(int index) const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Phenopacket.phenotypic_features)
  return phenotypic_features_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::PhenotypicFeature* Phenopacket::add_phenotypic_features() {
  // @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.Phenopacket.phenotypic_features)
  return phenotypic_features_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::PhenotypicFeature >&
Phenopacket::phenotypic_features() const {
  // @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.Phenopacket.phenotypic_features)
  return phenotypic_features_;
}

// repeated .org.phenopackets.schema.v1.core.Biosample biosamples = 4;
inline int Phenopacket::biosamples_size() const {
  return biosamples_.size();
}
inline ::org::phenopackets::schema::v1::core::Biosample* Phenopacket::mutable_biosamples(int index) {
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Phenopacket.biosamples)
  return biosamples_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Biosample >*
Phenopacket::mutable_biosamples() {
  // @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.Phenopacket.biosamples)
  return &biosamples_;
}
inline const ::org::phenopackets::schema::v1::core::Biosample& Phenopacket::biosamples(int index) const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Phenopacket.biosamples)
  return biosamples_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::Biosample* Phenopacket::add_biosamples() {
  // @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.Phenopacket.biosamples)
  return biosamples_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Biosample >&
Phenopacket::biosamples() const {
  // @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.Phenopacket.biosamples)
  return biosamples_;
}

// repeated .org.phenopackets.schema.v1.core.Gene genes = 5;
inline int Phenopacket::genes_size() const {
  return genes_.size();
}
inline ::org::phenopackets::schema::v1::core::Gene* Phenopacket::mutable_genes(int index) {
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Phenopacket.genes)
  return genes_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Gene >*
Phenopacket::mutable_genes() {
  // @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.Phenopacket.genes)
  return &genes_;
}
inline const ::org::phenopackets::schema::v1::core::Gene& Phenopacket::genes(int index) const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Phenopacket.genes)
  return genes_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::Gene* Phenopacket::add_genes() {
  // @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.Phenopacket.genes)
  return genes_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Gene >&
Phenopacket::genes() const {
  // @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.Phenopacket.genes)
  return genes_;
}

// repeated .org.phenopackets.schema.v1.core.Variant variants = 6;
inline int Phenopacket::variants_size() const {
  return variants_.size();
}
inline ::org::phenopackets::schema::v1::core::Variant* Phenopacket::mutable_variants(int index) {
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Phenopacket.variants)
  return variants_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Variant >*
Phenopacket::mutable_variants() {
  // @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.Phenopacket.variants)
  return &variants_;
}
inline const ::org::phenopackets::schema::v1::core::Variant& Phenopacket::variants(int index) const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Phenopacket.variants)
  return variants_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::Variant* Phenopacket::add_variants() {
  // @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.Phenopacket.variants)
  return variants_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Variant >&
Phenopacket::variants() const {
  // @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.Phenopacket.variants)
  return variants_;
}

// repeated .org.phenopackets.schema.v1.core.Disease diseases = 7;
inline int Phenopacket::diseases_size() const {
  return diseases_.size();
}
inline ::org::phenopackets::schema::v1::core::Disease* Phenopacket::mutable_diseases(int index) {
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Phenopacket.diseases)
  return diseases_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Disease >*
Phenopacket::mutable_diseases() {
  // @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.Phenopacket.diseases)
  return &diseases_;
}
inline const ::org::phenopackets::schema::v1::core::Disease& Phenopacket::diseases(int index) const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Phenopacket.diseases)
  return diseases_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::Disease* Phenopacket::add_diseases() {
  // @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.Phenopacket.diseases)
  return diseases_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::Disease >&
Phenopacket::diseases() const {
  // @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.Phenopacket.diseases)
  return diseases_;
}

// repeated .org.phenopackets.schema.v1.core.HtsFile hts_files = 8;
inline int Phenopacket::hts_files_size() const {
  return hts_files_.size();
}
inline ::org::phenopackets::schema::v1::core::HtsFile* Phenopacket::mutable_hts_files(int index) {
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Phenopacket.hts_files)
  return hts_files_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >*
Phenopacket::mutable_hts_files() {
  // @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.Phenopacket.hts_files)
  return &hts_files_;
}
inline const ::org::phenopackets::schema::v1::core::HtsFile& Phenopacket::hts_files(int index) const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Phenopacket.hts_files)
  return hts_files_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::HtsFile* Phenopacket::add_hts_files() {
  // @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.Phenopacket.hts_files)
  return hts_files_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >&
Phenopacket::hts_files() const {
  // @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.Phenopacket.hts_files)
  return hts_files_;
}

// .org.phenopackets.schema.v1.core.MetaData meta_data = 9;
inline bool Phenopacket::has_meta_data() const {
  return this != internal_default_instance() && meta_data_ != nullptr;
}
inline const ::org::phenopackets::schema::v1::core::MetaData& Phenopacket::meta_data() const {
  const ::org::phenopackets::schema::v1::core::MetaData* p = meta_data_;
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Phenopacket.meta_data)
  return p != nullptr ? *p : *reinterpret_cast(
      &::org::phenopackets::schema::v1::core::_MetaData_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::MetaData* Phenopacket::release_meta_data() {
  // @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.Phenopacket.meta_data)
  
  ::org::phenopackets::schema::v1::core::MetaData* temp = meta_data_;
  meta_data_ = nullptr;
  return temp;
}
inline ::org::phenopackets::schema::v1::core::MetaData* Phenopacket::mutable_meta_data() {
  
  if (meta_data_ == nullptr) {
    auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::MetaData>(GetArenaNoVirtual());
    meta_data_ = p;
  }
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Phenopacket.meta_data)
  return meta_data_;
}
inline void Phenopacket::set_allocated_meta_data(::org::phenopackets::schema::v1::core::MetaData* meta_data) {
  ::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
  if (message_arena == nullptr) {
    delete reinterpret_cast< ::PROTOBUF_NAMESPACE_ID::MessageLite*>(meta_data_);
  }
  if (meta_data) {
    ::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
    if (message_arena != submessage_arena) {
      meta_data = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
          message_arena, meta_data, submessage_arena);
    }
    
  } else {
    
  }
  meta_data_ = meta_data;
  // @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.Phenopacket.meta_data)
}

// -------------------------------------------------------------------

// Family

// string id = 1;
inline void Family::clear_id() {
  id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Family::id() const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Family.id)
  return id_.GetNoArena();
}
inline void Family::set_id(const std::string& value) {
  
  id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
  // @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.Family.id)
}
inline void Family::set_id(std::string&& value) {
  
  id_.SetNoArena(
    &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
  // @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.Family.id)
}
inline void Family::set_id(const char* value) {
  GOOGLE_DCHECK(value != nullptr);
  
  id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
  // @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.Family.id)
}
inline void Family::set_id(const char* value, size_t size) {
  
  id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
      ::std::string(reinterpret_cast(value), size));
  // @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.Family.id)
}
inline std::string* Family::mutable_id() {
  
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Family.id)
  return id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Family::release_id() {
  // @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.Family.id)
  
  return id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Family::set_allocated_id(std::string* id) {
  if (id != nullptr) {
    
  } else {
    
  }
  id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), id);
  // @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.Family.id)
}

// .org.phenopackets.schema.v1.Phenopacket proband = 2;
inline bool Family::has_proband() const {
  return this != internal_default_instance() && proband_ != nullptr;
}
inline void Family::clear_proband() {
  if (GetArenaNoVirtual() == nullptr && proband_ != nullptr) {
    delete proband_;
  }
  proband_ = nullptr;
}
inline const ::org::phenopackets::schema::v1::Phenopacket& Family::proband() const {
  const ::org::phenopackets::schema::v1::Phenopacket* p = proband_;
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Family.proband)
  return p != nullptr ? *p : *reinterpret_cast(
      &::org::phenopackets::schema::v1::_Phenopacket_default_instance_);
}
inline ::org::phenopackets::schema::v1::Phenopacket* Family::release_proband() {
  // @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.Family.proband)
  
  ::org::phenopackets::schema::v1::Phenopacket* temp = proband_;
  proband_ = nullptr;
  return temp;
}
inline ::org::phenopackets::schema::v1::Phenopacket* Family::mutable_proband() {
  
  if (proband_ == nullptr) {
    auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::Phenopacket>(GetArenaNoVirtual());
    proband_ = p;
  }
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Family.proband)
  return proband_;
}
inline void Family::set_allocated_proband(::org::phenopackets::schema::v1::Phenopacket* proband) {
  ::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
  if (message_arena == nullptr) {
    delete proband_;
  }
  if (proband) {
    ::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
    if (message_arena != submessage_arena) {
      proband = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
          message_arena, proband, submessage_arena);
    }
    
  } else {
    
  }
  proband_ = proband;
  // @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.Family.proband)
}

// repeated .org.phenopackets.schema.v1.Phenopacket relatives = 3;
inline int Family::relatives_size() const {
  return relatives_.size();
}
inline void Family::clear_relatives() {
  relatives_.Clear();
}
inline ::org::phenopackets::schema::v1::Phenopacket* Family::mutable_relatives(int index) {
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Family.relatives)
  return relatives_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::Phenopacket >*
Family::mutable_relatives() {
  // @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.Family.relatives)
  return &relatives_;
}
inline const ::org::phenopackets::schema::v1::Phenopacket& Family::relatives(int index) const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Family.relatives)
  return relatives_.Get(index);
}
inline ::org::phenopackets::schema::v1::Phenopacket* Family::add_relatives() {
  // @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.Family.relatives)
  return relatives_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::Phenopacket >&
Family::relatives() const {
  // @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.Family.relatives)
  return relatives_;
}

// .org.phenopackets.schema.v1.core.Pedigree pedigree = 4;
inline bool Family::has_pedigree() const {
  return this != internal_default_instance() && pedigree_ != nullptr;
}
inline const ::org::phenopackets::schema::v1::core::Pedigree& Family::pedigree() const {
  const ::org::phenopackets::schema::v1::core::Pedigree* p = pedigree_;
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Family.pedigree)
  return p != nullptr ? *p : *reinterpret_cast(
      &::org::phenopackets::schema::v1::core::_Pedigree_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::Pedigree* Family::release_pedigree() {
  // @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.Family.pedigree)
  
  ::org::phenopackets::schema::v1::core::Pedigree* temp = pedigree_;
  pedigree_ = nullptr;
  return temp;
}
inline ::org::phenopackets::schema::v1::core::Pedigree* Family::mutable_pedigree() {
  
  if (pedigree_ == nullptr) {
    auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::Pedigree>(GetArenaNoVirtual());
    pedigree_ = p;
  }
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Family.pedigree)
  return pedigree_;
}
inline void Family::set_allocated_pedigree(::org::phenopackets::schema::v1::core::Pedigree* pedigree) {
  ::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
  if (message_arena == nullptr) {
    delete reinterpret_cast< ::PROTOBUF_NAMESPACE_ID::MessageLite*>(pedigree_);
  }
  if (pedigree) {
    ::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
    if (message_arena != submessage_arena) {
      pedigree = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
          message_arena, pedigree, submessage_arena);
    }
    
  } else {
    
  }
  pedigree_ = pedigree;
  // @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.Family.pedigree)
}

// repeated .org.phenopackets.schema.v1.core.HtsFile hts_files = 5;
inline int Family::hts_files_size() const {
  return hts_files_.size();
}
inline ::org::phenopackets::schema::v1::core::HtsFile* Family::mutable_hts_files(int index) {
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Family.hts_files)
  return hts_files_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >*
Family::mutable_hts_files() {
  // @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.Family.hts_files)
  return &hts_files_;
}
inline const ::org::phenopackets::schema::v1::core::HtsFile& Family::hts_files(int index) const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Family.hts_files)
  return hts_files_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::HtsFile* Family::add_hts_files() {
  // @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.Family.hts_files)
  return hts_files_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >&
Family::hts_files() const {
  // @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.Family.hts_files)
  return hts_files_;
}

// .org.phenopackets.schema.v1.core.MetaData meta_data = 6;
inline bool Family::has_meta_data() const {
  return this != internal_default_instance() && meta_data_ != nullptr;
}
inline const ::org::phenopackets::schema::v1::core::MetaData& Family::meta_data() const {
  const ::org::phenopackets::schema::v1::core::MetaData* p = meta_data_;
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Family.meta_data)
  return p != nullptr ? *p : *reinterpret_cast(
      &::org::phenopackets::schema::v1::core::_MetaData_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::MetaData* Family::release_meta_data() {
  // @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.Family.meta_data)
  
  ::org::phenopackets::schema::v1::core::MetaData* temp = meta_data_;
  meta_data_ = nullptr;
  return temp;
}
inline ::org::phenopackets::schema::v1::core::MetaData* Family::mutable_meta_data() {
  
  if (meta_data_ == nullptr) {
    auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::MetaData>(GetArenaNoVirtual());
    meta_data_ = p;
  }
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Family.meta_data)
  return meta_data_;
}
inline void Family::set_allocated_meta_data(::org::phenopackets::schema::v1::core::MetaData* meta_data) {
  ::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
  if (message_arena == nullptr) {
    delete reinterpret_cast< ::PROTOBUF_NAMESPACE_ID::MessageLite*>(meta_data_);
  }
  if (meta_data) {
    ::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
    if (message_arena != submessage_arena) {
      meta_data = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
          message_arena, meta_data, submessage_arena);
    }
    
  } else {
    
  }
  meta_data_ = meta_data;
  // @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.Family.meta_data)
}

// -------------------------------------------------------------------

// Cohort

// string id = 1;
inline void Cohort::clear_id() {
  id_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Cohort::id() const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Cohort.id)
  return id_.GetNoArena();
}
inline void Cohort::set_id(const std::string& value) {
  
  id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
  // @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.Cohort.id)
}
inline void Cohort::set_id(std::string&& value) {
  
  id_.SetNoArena(
    &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
  // @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.Cohort.id)
}
inline void Cohort::set_id(const char* value) {
  GOOGLE_DCHECK(value != nullptr);
  
  id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
  // @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.Cohort.id)
}
inline void Cohort::set_id(const char* value, size_t size) {
  
  id_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
      ::std::string(reinterpret_cast(value), size));
  // @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.Cohort.id)
}
inline std::string* Cohort::mutable_id() {
  
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Cohort.id)
  return id_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Cohort::release_id() {
  // @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.Cohort.id)
  
  return id_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Cohort::set_allocated_id(std::string* id) {
  if (id != nullptr) {
    
  } else {
    
  }
  id_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), id);
  // @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.Cohort.id)
}

// string description = 2;
inline void Cohort::clear_description() {
  description_.ClearToEmptyNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline const std::string& Cohort::description() const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Cohort.description)
  return description_.GetNoArena();
}
inline void Cohort::set_description(const std::string& value) {
  
  description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), value);
  // @@protoc_insertion_point(field_set:org.phenopackets.schema.v1.Cohort.description)
}
inline void Cohort::set_description(std::string&& value) {
  
  description_.SetNoArena(
    &::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::move(value));
  // @@protoc_insertion_point(field_set_rvalue:org.phenopackets.schema.v1.Cohort.description)
}
inline void Cohort::set_description(const char* value) {
  GOOGLE_DCHECK(value != nullptr);
  
  description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), ::std::string(value));
  // @@protoc_insertion_point(field_set_char:org.phenopackets.schema.v1.Cohort.description)
}
inline void Cohort::set_description(const char* value, size_t size) {
  
  description_.SetNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(),
      ::std::string(reinterpret_cast(value), size));
  // @@protoc_insertion_point(field_set_pointer:org.phenopackets.schema.v1.Cohort.description)
}
inline std::string* Cohort::mutable_description() {
  
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Cohort.description)
  return description_.MutableNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline std::string* Cohort::release_description() {
  // @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.Cohort.description)
  
  return description_.ReleaseNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited());
}
inline void Cohort::set_allocated_description(std::string* description) {
  if (description != nullptr) {
    
  } else {
    
  }
  description_.SetAllocatedNoArena(&::PROTOBUF_NAMESPACE_ID::internal::GetEmptyStringAlreadyInited(), description);
  // @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.Cohort.description)
}

// repeated .org.phenopackets.schema.v1.Phenopacket members = 3;
inline int Cohort::members_size() const {
  return members_.size();
}
inline void Cohort::clear_members() {
  members_.Clear();
}
inline ::org::phenopackets::schema::v1::Phenopacket* Cohort::mutable_members(int index) {
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Cohort.members)
  return members_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::Phenopacket >*
Cohort::mutable_members() {
  // @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.Cohort.members)
  return &members_;
}
inline const ::org::phenopackets::schema::v1::Phenopacket& Cohort::members(int index) const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Cohort.members)
  return members_.Get(index);
}
inline ::org::phenopackets::schema::v1::Phenopacket* Cohort::add_members() {
  // @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.Cohort.members)
  return members_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::Phenopacket >&
Cohort::members() const {
  // @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.Cohort.members)
  return members_;
}

// repeated .org.phenopackets.schema.v1.core.HtsFile hts_files = 4;
inline int Cohort::hts_files_size() const {
  return hts_files_.size();
}
inline ::org::phenopackets::schema::v1::core::HtsFile* Cohort::mutable_hts_files(int index) {
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Cohort.hts_files)
  return hts_files_.Mutable(index);
}
inline ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >*
Cohort::mutable_hts_files() {
  // @@protoc_insertion_point(field_mutable_list:org.phenopackets.schema.v1.Cohort.hts_files)
  return &hts_files_;
}
inline const ::org::phenopackets::schema::v1::core::HtsFile& Cohort::hts_files(int index) const {
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Cohort.hts_files)
  return hts_files_.Get(index);
}
inline ::org::phenopackets::schema::v1::core::HtsFile* Cohort::add_hts_files() {
  // @@protoc_insertion_point(field_add:org.phenopackets.schema.v1.Cohort.hts_files)
  return hts_files_.Add();
}
inline const ::PROTOBUF_NAMESPACE_ID::RepeatedPtrField< ::org::phenopackets::schema::v1::core::HtsFile >&
Cohort::hts_files() const {
  // @@protoc_insertion_point(field_list:org.phenopackets.schema.v1.Cohort.hts_files)
  return hts_files_;
}

// .org.phenopackets.schema.v1.core.MetaData meta_data = 5;
inline bool Cohort::has_meta_data() const {
  return this != internal_default_instance() && meta_data_ != nullptr;
}
inline const ::org::phenopackets::schema::v1::core::MetaData& Cohort::meta_data() const {
  const ::org::phenopackets::schema::v1::core::MetaData* p = meta_data_;
  // @@protoc_insertion_point(field_get:org.phenopackets.schema.v1.Cohort.meta_data)
  return p != nullptr ? *p : *reinterpret_cast(
      &::org::phenopackets::schema::v1::core::_MetaData_default_instance_);
}
inline ::org::phenopackets::schema::v1::core::MetaData* Cohort::release_meta_data() {
  // @@protoc_insertion_point(field_release:org.phenopackets.schema.v1.Cohort.meta_data)
  
  ::org::phenopackets::schema::v1::core::MetaData* temp = meta_data_;
  meta_data_ = nullptr;
  return temp;
}
inline ::org::phenopackets::schema::v1::core::MetaData* Cohort::mutable_meta_data() {
  
  if (meta_data_ == nullptr) {
    auto* p = CreateMaybeMessage<::org::phenopackets::schema::v1::core::MetaData>(GetArenaNoVirtual());
    meta_data_ = p;
  }
  // @@protoc_insertion_point(field_mutable:org.phenopackets.schema.v1.Cohort.meta_data)
  return meta_data_;
}
inline void Cohort::set_allocated_meta_data(::org::phenopackets::schema::v1::core::MetaData* meta_data) {
  ::PROTOBUF_NAMESPACE_ID::Arena* message_arena = GetArenaNoVirtual();
  if (message_arena == nullptr) {
    delete reinterpret_cast< ::PROTOBUF_NAMESPACE_ID::MessageLite*>(meta_data_);
  }
  if (meta_data) {
    ::PROTOBUF_NAMESPACE_ID::Arena* submessage_arena = nullptr;
    if (message_arena != submessage_arena) {
      meta_data = ::PROTOBUF_NAMESPACE_ID::internal::GetOwnedMessage(
          message_arena, meta_data, submessage_arena);
    }
    
  } else {
    
  }
  meta_data_ = meta_data;
  // @@protoc_insertion_point(field_set_allocated:org.phenopackets.schema.v1.Cohort.meta_data)
}

#ifdef __GNUC__
  #pragma GCC diagnostic pop
#endif  // __GNUC__
// -------------------------------------------------------------------

// -------------------------------------------------------------------


// @@protoc_insertion_point(namespace_scope)

}  // namespace v1
}  // namespace schema
}  // namespace phenopackets
}  // namespace org

// @@protoc_insertion_point(global_scope)

#include 
#endif  // GOOGLE_PROTOBUF_INCLUDED_GOOGLE_PROTOBUF_INCLUDED_phenopackets_2eproto