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This bundle wraps Pi4j (http://pi4j.com) that wraps the native code Wiring Pi (http://wiringpi.com). It wraps these libraries to make them OSGi friendly and allow them to work together with the OSGi enRoute IoT circuit library (osgi.enroute.iot.circuit). The bundle will first use Pi4J to detect on what hardware it runs. If it runs on an appropriate type, it will register a component that can be configured with Metatype. The Metatype defines a full blown configuration template for all the Pi's functions. The GPIO's are registered as components for the circuit. Regardless of the success of the configuration, this bundle will also register a GpioController service, which is the main Pi4J class.

This module contains the sequence datastructure of the TCS Alignment Toolbox. It defines the possible value sets in the ValueType enum as well as the different KeywordSpecification classes, namely: 1.) StringKeywordSpecification for string type values. 2.) SymbolicKeywordSpecification for values from a discrete alphabet (also refer to the Alphabet class) 3.) VectorialKeywordSpecification for vectors of some length (or for scalars) A NodeSpecification is a vector of such KeywordSpecifications and defines the order of value sets. A node, then, is defined as a vector of values from these value sets (also refer to the Value interface as well as the StringValue, SymbolicValue and VectorialValue classes). Finally a sequence is defined as a list of such nodes.

This bundle wraps Pi4j (http://pi4j.com) that wraps the native code Wiring Pi (http://wiringpi.com). It wraps these libraries to make them OSGi friendly and allow them to work together with the OSGi enRoute IoT circuit library (osgi.enroute.iot.circuit). The bundle will first use Pi4J to detect on what hardware it runs. If it runs on an appropriate type, it will register a component that can be configured with Metatype. The Metatype defines a full blown configuration template for all the Pi's functions. The GPIO's are registered as components for the circuit. Regardless of the success of the configuration, this bundle will also register a GpioController service, which is the main Pi4J class.

Tinder is a Java based XMPP library, providing an implementation for XMPP stanzas and components. Tinders origins lie in code that's shared between Jive Software's Openfire and Whack implementations. The implementation that's provided in Tinder hasn't been written again from scratch. Instead, code has been moved from the original projects into Tinder, preserving al of the existing features and functionality. Most of the code that's now in Tinder is based on the org.xmpp package implementation that previously existed in Openfire and Whack. This is the code that defines classes such as Packet, JID, IQ, Component and their extensions. Additionally, some multi-purpose code (such as the DataForm and Result Set Management implementations have been moved to Tinder as well.

SEPIA provides implementations for various types of Petri nets. Along Place/Transition-nets, it supports Petri nets with distinguishable token colors and defines coloured workflow nets, where coloured tokens are interpreted as data elements used during process execution. To support information flow analysis of processes, SEPIA defines so-called IF-Nets, tailored for security-oriented workflow modeling which enable users to assign security-levels (HIGH, LOW) to transitions, data elements and persons/agents participating in the process execution.

Geronimo integration testsuite. This contains 2 profiles, default and child. The default profile is used by the top level suites directly under this. The child profile is used by the test poms under the suites. This pom defines the basic dependencies needed by most suites. The start-selenium, start-server, invoke, and stop-server goals are globally configured here in the pluginManagement sections. They just need to be bound in the suites where needed and appropriate. The test poms under the suites should have this pom as their parent and set their relativePath appropriately The test poms under the suites inherit an empty 'child' profile from here. But any other build executions within the test poms should all be inside a 'child' profile.

This module defines the interface for AlignmentAlgorithms as well as some helper classes. An AlignmentAlgorithm computes an Alignment of two given input sequences, given a Comparator that works in these sequences. More details on the AlignmentAlgorithm can be found in the respective interface. More information on Comparators can be found in the comparators module. The resulting 'Alignment' may be just a real-valued dissimilarity between the input sequence or may incorporate additional information, such as a full Alignment, a PathList, a PathMap or a CooptimalModel. If those results support the calculation of a Gradient, they implement the DerivableAlignmentDistance interface. In more detail, the Alignment class represents the result of a backtracing scheme, listing all Operations that have been applied in one co-optimal Alignment. A classic AlignmentAlgorithm does not result in a differentiable dissimilarity, because the minimum function is not differentiable. Therefore, this package also contains utility functions for a soft approximation of the minimum function, namely Softmin. For faster (parallel) computation of many different alignments or gradients we also provide the ParallelProcessingEngine, the SquareParallelProcessingEngine and the ParallelGradientEngine.

This module defines the interfaces for Comparators in the TCS Alignment Toolbox. A Comparator has the purpose of defining the dissimilarity between elements in the input sequences of an Alignment. More specific information on Comparators can be found in the 'Comparator' interface. You can find a lot of helpful standard implementations of Comparators in the comparators-lib module. In the TCS Alignment Toolbox we require the output values of Comparators to lie in the range [0,1]. Many natural dissimilarities on value sets do not meet this criterion, such that additional normalization has to be applied. To that end this package also contains a Normalizer interface for functions that map real values from the range [0, infinity) to the range [0,1]. This package also provides a few convenience implementations of the Comparator interface to make the implementation of custom Comparators simpler, namely: SkipExtendedComparator, ParameterLessSkipExtendedComparator, ComparisonBasedSkipExtendedComparator, and ParameterLessComparisonBasedSkipExtendedComparator. Finally the TCS Alignment Toolbox also provides the means to learn parameters of Comparators. To enable that Comparators must implement the DerivableComparator interface to properly define the parameters that can be learned and the gradient of the dissimilarity with respect to these parameters. Gradients are stored using the Gradient interface as well as some convenience implementations of said interface, namely EmptyGradient, SingletonGradient, ArrayGradient and ListGradient.

Module that defines the HttpChannel API. HttpChannels abstract complex download and upload steps into a simple and easy to use NIO Channel. NIO Channels can be wrapped into an InputStream or OutputStream and used in any way you may find possible to. Aside from that, Channels can be used natively in most next-gen libraries, meaning that you don't even need to wrap anything, just start writing or reading data to or from the channel wth a ByteBuffer. Anyone using the library should try to rely on code from this module only and, only if necessary, on configuration classes that are implementation specific. Relying on any other resource or class is considered an error and should NOT be done. One of the most interesting usages of channels for uploads and download is that you can easily copy data straight from one channel to the other, with less than 10 lines of code! Also, channels allows the implementation of a "tee" mechanism, in which data redden from a single channel can be copied to several other channels on the fly!

Rouplex-Niossl is a java SPI (service provider interface) for secure (SSL/TLS), selectable, socket channels. Some of the classes in the java.nio.channels package have been extended by secure counterparts that can be used side by side, or replace existing instances of the plain implementations. This package contains just the entry point calls for instantiating such instances, as well as a non-functional, default implementation. For a concrete implementation of these classes you can take a look at Rouplex-Niossl-Spi, which would be included as a separate dependency to your applications. More specifically this library defines SSLSocketChannel class to inherit from SocketChannel, SSLServerSocketChannel to inherit from ServerSocketChannel and SSLSelector to inherit from SSLSelector. One or more instances of SSLSocketChannel can be registered with an (or more) instance of SSLSelector to be selected upon, with the same exact semantics a SocketChannel would expect from registering with a Selector. Further, a mixture of SocketChannels and SSLSocketChannels can be registered simultaneously with an SSLSelector. The secure counterparts abide to the same API and semantics defined for plain channels at https://docs.oracle.com/javase/8/docs/api/java/nio/channels/package-summary.html. This way, the existing products can be easily updated to provide secure communication and new products can achieve security of data in transit by using the already proven and excellent patterns for communication such as nio.