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Skeletal implementation of interface javax.lang.model.util.Types, plus concrete realization backed by core Java Reflection API, akin to JEP 119. This module implements those methods in interface javax.lang.model.util.Types that pertain to the Java type system, plus it provides a method for resolving formal type parameters to actual type arguments. These methods have no equivalent in the Java Reflection API. The abstract skeletal implementation in this module is meant to be specialized for a particular javax.lang.model implementation. The abstraction makes this module well-suited to be used in projects that contain javax.lang.model as part of their domain model (for instance, implementations of alternative languages on top of the JVM).

Rserve is a TCP/IP server which allows other programs to use facilities of R (see www.r-project.org) from various languages without the need to initialize R or link against R library. Every connection has a separate workspace and working directory. Client-side implementations are available for popular languages such as C/C++, PHP and Java. Rserve supports remote connection, authentication and file transfer. Typical use is to integrate R backend for computation of statstical models, plots etc. in other applications.

Asynchronous publish-subscribe communication library. Features: 1. Listeners are stored using WeakReferences to prevent memory leaks when they are not unsubscribed. 2. Uses fork-join framework for concurrent event delivery. 3. Publish methods returns collection of Futures that represent event notifications. 4. Supports ordered publishing: guaranteed to notify of the events in order they were published. 5. Provides EventSource and EventService interfaces for better integration with IOC containers and alternative implementations.

Siena is a persistence abstraction layer made in Java with various implementations: * siena-jdbc: persists objects into a relational database using JDBC (status: deeply tested) * siena-gae: persists objects into the Google App Engine's datastore using its low-level API (status: beta) * siena-sdb: persists objects using Amazon's SimpleDB (very experimental) * siena-remote: persists objects remotely using a remote web application that uses siena. (planning) Siena is also: * Intrusive. You make a class persistent by extending a certain class. Relationships are defined also in an intrusive way. * Simple. Simplicity is the most important thing. * Limited. Due to the simplicity there are several unsupported things such as JOINs. * Extensible. There are two interfaces you can implement on your own way.

BRAP is a Java and Android remoting protocol that uses native Java object serialization, encapsulated in HTTP. It aims to be an alternative to Spring HttpInvoker and Spring Security especially when you don't need or want the dependencies of Spring in your client, for example when building a rich client app or an Android app where size is important. The authentication mechanism lets you use your own domain objects as credentials. Server configuration can be expressed solely in web.xml or by subclassing the ProxyServlet but there is also an optional SpringProxyServlet available for seamless Spring Integration. BRAP focuses on being easy to use, small in size (9 kb), yet powerful and extensible. The client uses a pluggable TransportProvider with default implementations for HttpURLConnection and Apache HttpClient.

relay-jdbc allows a JDBC connection to be relayed through an intermediate relay server: it is both a JDBC driver (client) and a JDBC relay server. It is a fork of https://github.com/AugeoSoftware/VJDBC project, where Aleksei Yu. Semenov has implemented a number of brilliant improvements of the orignal VJDBC project hosted on http://vjdbc.sourceforge.net Original Developers were: Hunter Payne ([email protected]) and Michael Link ([email protected]). For all pre-existing code, credits go to the original respective author. This product brings the original VJDBC concept further and (apart from code quality improvements and bug fixes) implements complete separation of the underlying transport mechanism, introducing support for connecting directly through a SSH pipe, where the relay server interacts with the client through standard I/O pipes. The re-designed transport architecture supports easy development of new transport implementations, allowing this JDBC relay to be quickly adapted to a variety of exotic environments.

This module defines the interfaces for Comparators in the TCS Alignment Toolbox. A Comparator has the purpose of defining the dissimilarity between elements in the input sequences of an Alignment. More specific information on Comparators can be found in the 'Comparator' interface. You can find a lot of helpful standard implementations of Comparators in the comparators-lib module. In the TCS Alignment Toolbox we require the output values of Comparators to lie in the range [0,1]. Many natural dissimilarities on value sets do not meet this criterion, such that additional normalization has to be applied. To that end this package also contains a Normalizer interface for functions that map real values from the range [0, infinity) to the range [0,1]. This package also provides a few convenience implementations of the Comparator interface to make the implementation of custom Comparators simpler, namely: SkipExtendedComparator, ParameterLessSkipExtendedComparator, ComparisonBasedSkipExtendedComparator, and ParameterLessComparisonBasedSkipExtendedComparator. Finally the TCS Alignment Toolbox also provides the means to learn parameters of Comparators. To enable that Comparators must implement the DerivableComparator interface to properly define the parameters that can be learned and the gradient of the dissimilarity with respect to these parameters. Gradients are stored using the Gradient interface as well as some convenience implementations of said interface, namely EmptyGradient, SingletonGradient, ArrayGradient and ListGradient.