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This Content Negotiation Filter provides a content negotiation filter for Java EE servlet containers. The content negotiation algorithm is based on the Apache negotiation algorithm but lacks support for the encoding and character set. The variants can be configured through an XML file, negotiation.xml, in the WEB-INF/classes directory. This file can be overriden with the 'xmlInputFile' filter parameter. This XML file is parsed with the class 'com.mattunderscore.filter.contentnegotiation.variantsource.FilterVariantXMLSource'. This class can be overridden with the 'variantSource' filter parameter. The XML parser is implemented as a SAX parser. The SAX handler class can be overridden by the saxHandlerClass filter parameter. The 'variantSource' parameter can take any class that implements the 'com.mattunderscore.filter.contentnegotiation.variantsource.VariantSource'.

Extension for Jackson (http://jackson.codehaus.org) to offer alternative support for serializing POJOs as XML and deserializing XML as pojos. Support implemented on top of Stax API (javax.xml.stream), by implementing core Jackson Streaming API types like JsonGenerator, JsonParser and JsonFactory. Some data-binding types overridden as well (ObjectMapper sub-classed as XmlMapper).

Interfaces to be implemented by Domains, Connectors and Events which handle intatiation of Services and Proxies, classes for registration of bundles and services, classes for localization, classes that save connector properties (Persistence) and finally classes that enable the web application to have access to OSGI bundles. This bundle contains only the model and interface descriptions of all those services. In theory someone can take only a minor number of openengsb bundles, the api and create the rest of the system on his own.

PatternTesting Check.CT (patterntesting-check-ct) is a quality framework that allows to automatically verify that Architecture/Design recommendations are implemented correctly in the code. It provides different checks of known anti patterns (like using System.out for logging) but provides also a test framework for better testing. The checks are done during compile time (this is the "CT" in Check.CT").

Dryuf BigIo is stateless, unlimited IO framework, solving few design problems of original JDK. It mainly provides three things - FlatBuffer with 64-bit address space and being stateless. Additionally, it provides FlatChannel interface and few implementations - providing the arbitrary reads and writes from chosen position. This is implemented only in FileChannel in NIO so this interface makes it easier to provide those stateless reads and writes on virtual channels too. BigIo also provides committable objects, allowing marking the object as completed or incomplete, so it correctly results into success or exception on receiving side.

ZooKeeper is a centralized service for maintaining configuration information, naming, providing distributed synchronization, and providing group services. All of these kinds of services are used in some form or another by distributed applications. Each time they are implemented there is a lot of work that goes into fixing the bugs and race conditions that are inevitable. Because of the difficulty of implementing these kinds of services, applications initially usually skimp on them ,which make them brittle in the presence of change and difficult to manage. Even when done correctly, different implementations of these services lead to management complexity when the applications are deployed.

Maltcms, short for "Modular Application Toolkit for Chromatography Mass-Spectrometry" is an application framework mainly suited for developers working in the domain of bioinformatics for metabolomics and proteomics. Its aim is to provide reusable, efficient datastructures, abstracting from the various low-level data-formats like netcdf (ANDIMS), mzXML, mzData and mzML and providing consistent access to data features like mass spectra, chromatograms and metadata. Furthermore, Maltcms provides a platform for the implementation and execution of processing pipelines. New and existing algorithms can be easily implemented or included and executed together with existing processing elements.

The bit array data structure is implemented in Java as the BitSet class. Unfortunately, this fails to scale without compression. JavaEWAH is a word-aligned compressed variant of the Java bitset class. It uses a 64-bit run-length encoding (RLE) compression scheme. The goal of word-aligned compression is not to achieve the best compression, but rather to improve query processing time. Hence, we try to save CPU cycles, maybe at the expense of storage. However, the EWAH scheme we implemented is always more efficient storage-wise than an uncompressed bitmap (implemented in Java as the BitSet class). Unlike some alternatives, javaewah does not rely on a patented scheme.