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In brewing, mashing passes raw ingredients through hot water to activate, hydrate, and convert them for fermentation. Mash, the open source project, takes raw data payloads and provides a generic mediation process to translate the payloads into a new output. This allows configuration-driven mediation to be plugged into your application, which is especially important when dealing with ad-hoc tweaks that need to occur to payloads to add, remove, or alter them to conform to changing service payloads to/from other systems.

This open source software is a reference implementation, consisting of software and related files, for the OMG specification called the Semantics of a Foundational Subset for Executable UML Models (fUML). The reference implementation is intended to implement the execution semantics of UML activity models, accepting an XMI file from a conformant UML model as its input and providing an execution trace of the selected activity model(s) as its output. The core execution engine, which is directly generated from the normative syntactic and semantic models for fUML, may also be used as a library implementation of fUML in other software.

This plugin provides a registered action, toolbar button and menu actions which can clear the REUSE flag <b>preventing a file from being replaced</b>. <br/><br/> The toolbar button, which looks like a "push pin", provides a visual indication that the currently active editor is REUSEable; the button is only enabled when the active editor is REUSEable. <br/><br/> In some situations the IDE/platform opens a file with the REUSE flag (see NetBeans API doc Line.ShowOpenType); files opened like this can be automatically replaced in an editor window by other files. <br/><br/> IDE REUSE examples: single stepping into a file, clicking on a stacktrace for goto source, jVi tag-stack operations.

In C++, writing a loop that iterates over a sequence is tedious. We can either use iterators, which requires a considerable amount of boiler-plate, or we can use the std::for_each() algorithm and move our loop body into a predicate, which requires no less boiler-plate and forces us to move our logic far from where it will be used. In contrast, some other languages, like Perl, provide a dedicated "foreach" construct that automates this process. BOOST_FOREACH is just such a construct for C++. It iterates over sequences for us, freeing us from having to deal directly with iterators or write predicates.

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This project has a lot of business classes to work with genes and related named entities. Genes are part of a GeneDocument and may have gold IDs as well as mapped/predicted IDs. Another large part are species because most (all?) gene ID databases are species specific. So there are also classes or members to represent species mentions and the assignment of species IDs (taxonomy IDs) to genes. There is little to no business logic herein. This project is only useful as building block in other projects dealing with species assignment, gene ID mapping or similar efforts.

In brewing, mashing passes raw ingredients through hot water to activate, hydrate, and convert them for fermentation. Mash, the open source project, takes raw data payloads and provides a generic mediation process to translate the payloads into a new output. This allows configuration-driven mediation to be plugged into your application, which is especially important when dealing with ad-hoc tweaks that need to occur to payloads to add, remove, or alter them to conform to changing service payloads to/from other systems.